mRNA_E-siliculosus-1a_M_contig88.16844.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16844.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI) HSP 1 Score: 1235 bits (3196), Expect = 0.000e+0 Identity = 1028/1179 (87.19%), Postives = 1039/1179 (88.13%), Query Frame = 1
Query: 1042 EAESDVQVNFPPHFDDGRKSGSGSENGSSSS-TCKARGDSLGTKSGSTSLLSMMSGSPRSIGTAPDSAAGGSPRTPLSDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPAVSVGNAGAGGDGEYDDMDLPSAHPTPLSAFGGGDGEXXXXXXXXXXXXXSSTGRGRSLSRAGGDGDDKSADGRSKSIEAGSGSFMHRLKYWSGMNRQDSSTSMASAPSKHGRGHRGGSTDAGGSRVTVAAVQVSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA----SSASQGGVSPRKLPASFTRSSGRMADPRGSGGVQLSEAARPSTANSGSXXXXXXXXXXXXXXXXXXXRSRPVAATPLSESPPPYSETARSEASGISPSELRGVPVMPFDSVTSDATSAYNAGPPPAYRSHGGGRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KKGEGAPARSRKFSGFGASHRAELAAMRRARGTPSPGDEEVKDEEKELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VAPEXPKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYMAIVEAANVKSALDNSSTSEHTDTSPSEDDGGMMAEILTDRLMEVCSKMEQSAASPEADLSDGAAEAMALGXXXXXXXXXKRRPSRRRQLSNMSNRTLHSIAGGEGEEEDADSDEGSVMDAGAAARKLRRERLRKRAKQSRKMSSVLAVPKDDRGEVIHLHTAAYNGKQDVLKAYIAQGGDLEASMQGIRDQFQATALMLCAERGHTQMVDDLLSAGAEVSCVDENANSALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDLATDPAIRRILRTEQMVRFSGETFDLLGAVEVNDTMAVANFIAMGQEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSILXXXXXXXXXXXXXXXXXXXXXXCEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKDADLGRLXXXXXXXXXXIRHLADRMDSVHKLLKGVSALQ 4554
+AESDVQVNFP HFDDGRK+GSGSENGSSSS TCKARGDSLGTKSGSTSLLSMMSGSPRSIGTAPDSAAGGSPRTPLSDNS XXXXXXXXXXXXXXX LPPAVSVGNAGAGGDGEYDDMDLPSAHPTPLSAFGGGDGEXXXXXXXXXXXXXSSTGRGRSLSRAGGDGDDKSADGRSKSIEAGSGSFM RLKYWSGM QDSSTSMASAPSKHGRGHRGGST AGGSRVTV AVQ SAATAXXXXXXXXX X XXXXXXXXXXX SSA QGGVSPRKLPASFTRSSGR+ADPRGSGGV+ SEAA+PSTANSGS XXXXXXXXXXXXXXX RSRPVAA PLSESPPPYSETARSEASGISP ELRGVPVMPFDSVTSDATSAYNAGPPPAYRSHGGGRVS XXXXXXXXXXXXXXXXXXXXXXXXXXX +K EGAPA+SRKFS FGASHRAELAAMRRARGT SPGDEEVKD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V PE PKPL XXXXXXXXXXXXXXXXXXXXXXXXXX RYMAIVEAANVKSALDNSSTSEHTDTSPSEDDGGMMAEILTDRLMEVCSKMEQSAASPEADLSDGAAEAMALG KRRPSRRRQLSNMSNRTLHS+AGGEGEEEDADSDEGSVMDAGAAARKLRRERLRKRAKQSRKMSSVLAVPKDDRGEVIH+HTAAYNGKQDVLKAYI+QGGDLE IRDQFQATALMLCAERGHTQMVDDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLATDPAIRRILR EQMVRFSGE FDLLGAVEVNDTMAVANFIAMGQEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSILXXXXXXXXXXXXXXXXXXXXXXCEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKD DLG XXXXXXXXXX LADRM+SVHKLLKGVSALQ
Sbjct: 20 DAESDVQVNFPSHFDDGRKNGSGSENGSSSSSTCKARGDSLGTKSGSTSLLSMMSGSPRSIGTAPDSAAGGSPRTPLSDNSSAHXXXXXXXXXXXXXXX-----------------LPPAVSVGNAGAGGDGEYDDMDLPSAHPTPLSAFGGGDGEXXXXXXXXXXXXXSSTGRGRSLSRAGGDGDDKSADGRSKSIEAGSGSFMQRLKYWSGMTHQDSSTSMASAPSKHGRGHRGGSTGAGGSRVTVEAVQGSAATAXXXXXXXXXSGAGRAAGTAAAXKEXXXXXXXXXXXXXXXXXSSAPQGGVSPRKLPASFTRSSGRIADPRGSGGVRPSEAAQPSTANSGSSXXXXXXXXXXXXXXX---RSRPVAAAPLSESPPPYSETARSEASGISPCELRGVPVMPFDSVTSDATSAYNAGPPPAYRSHGGGRVSTVAAVSSTRQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPAGRPGDDASAEKEEGAPAKSRKFSDFGASHRAELAAMRRARGTSSPGDEEVKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDVPPEKPKPLRYGXXXXXXXXXXXXXXXXXXXXXXXXXX--RYMAIVEAANVKSALDNSSTSEHTDTSPSEDDGGMMAEILTDRLMEVCSKMEQSAASPEADLSDGAAEAMALGGGGVH----KRRPSRRRQLSNMSNRTLHSVAGGEGEEEDADSDEGSVMDAGAAARKLRRERLRKRAKQSRKMSSVLAVPKDDRGEVIHVHTAAYNGKQDVLKAYISQGGDLE-----IRDQFQATALMLCAERGHTQMVDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLATDPAIRRILRIEQMVRFSGENFDLLGAVEVNDTMAVANFIAMGQEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSILXXXXXXXXXXXXXXXXXXXXXXCEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKDVDLGXXXXXXXXXXXXXXXLADRMESVHKLLKGVSALQ 1167
BLAST of mRNA_E-siliculosus-1a_M_contig88.16844.1 vs. uniprot
Match: A0A7D3ZNW7_9ACTN (Ankyrin repeat domain protein n=1 Tax=Actinomadura verrucosospora TaxID=46165 RepID=A0A7D3ZNW7_9ACTN) HSP 1 Score: 63.5 bits (153), Expect = 8.790e-7 Identity = 60/226 (26.55%), Postives = 91/226 (40.27%), Query Frame = 1
Query: 3454 LAVPKDDRGEVIHLHTAAYNGKQDVLKAYIAQGGDLEASMQGIRDQFQATALMLCAERGHTQMVDDLLSAGAEVSCVDENANSALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDLATDPAIRRILRTEQMVRFSGETFDLLGAVEVNDTMAVANFIAMGQEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDG 4131
LA DD L TAAY G VLK IA G D+ A+ D+ TAL++ A V+ LL+AGA+ +AL ++ + E V + D G ++V + A + A + +A+K++ L+ + G+S +H AA HG+AD +RLLLEAG++PN + G
Sbjct: 16 LATGSDDVSRADALRTAAYLGDLAVLKEQIAAGADVNAA-----DERGWTALLVAAREAFRDGVEALLAAGADPGIALPGGFTALHQVIQHTKDRPVKYEVTVVRDGVETVLTGRD--EIRAETGSHPDDEYEDCVDVARMLID--GGIDVEMATSEAGQTPLSHAASRGTAEITELLIATKQVDLDSRDKDGVSPLHYAARHGHADPVRLLLEAGANPNITENYG 232 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16844.1 >prot_E-siliculosus-1a_M_contig88.16844.1 ID=prot_E-siliculosus-1a_M_contig88.16844.1|Name=mRNA_E-siliculosus-1a_M_contig88.16844.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1519bp MAPALGVGRGWNGGSSSLRGGAAAADTATAITEHTERLPGDDSNKHHTTAback to top mRNA from alignment at E-siliculosus-1a_M_contig88:580299..592563- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16844.1 ID=mRNA_E-siliculosus-1a_M_contig88.16844.1|Name=mRNA_E-siliculosus-1a_M_contig88.16844.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12265bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:580299..592563- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:580299..592563- >mRNA_E-siliculosus-1a_M_contig88.16844.1 ID=mRNA_E-siliculosus-1a_M_contig88.16844.1|Name=mRNA_E-siliculosus-1a_M_contig88.16844.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=9114bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:580299..592563- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |