mRNA_E-siliculosus-1a_M_contig88.16836.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16836.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16836.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig88.16836.1 vs. uniprot
Match: D8LKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE5_ECTSI)

HSP 1 Score: 719 bits (1856), Expect = 5.320e-254
Identity = 473/569 (83.13%), Postives = 482/569 (84.71%), Query Frame = 1 
Query:    1 MQRRPHFEKARQSTRCRERKAMPREYDPRRYGPIAISSRAPVSSRSVSAAPAGEVRREGQLVFSTSPLRGGRLSSPRQRQRRVGVGGECSWPSRSGIPKWQVASRGLRSFAEEAAVSHGCVYMYNSSDAIHRESRRTAALKGGTRGERAYRQLHTRRAPFKDINTTASTCLESTRDRAGAAAXXXXXXXXXXXXDTSHESRGRARRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFGSYNNANMLIDNSGRINDGGCSCCTTPRQQFFCCESMLRSTSCGSSVSSGNEAAGEREGRTRRXXXXXXXXXXXXXXXXXXXXXGGAGRGGSIDAEELFRRKNKMASFNVTYGRWAESYDRGMARRASLERRERLEIERENDLRRQRAEEEFQKWMRSHGRRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTQIRKEAWTDGERDKGVGGSGGTPRSPSSRHSPFACSEESAPFSSAGGRGDEGGVRVGGSGSGRCGGDXXXXXXXXXXXXXXXXXXXRDKADRAFREWLGRKKREAQADRE 1707
            MQRRPHFEK RQ  RCRERKAMPREYDPRRYGPIA SSRAPVSSRS SAAPAGEVRREGQLVFSTSP RGGRLSS RQRQ RVGVGGECSWPSRSG PKWQV SRGLRSF+EEAAVSHG           H ESR  AA +GGTRGERA+RQLH RRAPFKDINTTASTCLESTRD A AAA            DT HESRGR RRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAF SYNNANMLIDNS RINDG CSCCTTPRQQ+FCCESMLRST+CGSSVSSGNEAAGEREG TRR                     GGAG G SIDAEELFRRKNKMA FNVTYGRWAESYDR MARRASLERRERLEIERENDLRRQRAEEEFQKWMRSHGRRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LTQ+RKE+WTDGERDKGVGGSG TPRSPSSRHSPFA SEE APFSSAGGRGD+GGVRVG          XXXXXXXXXXXXXXXXXXXRDKADRAFREWLGRKKREAQADR+
Sbjct:    1 MQRRPHFEKVRQLARCRERKAMPREYDPRRYGPIASSSRAPVSSRSASAAPAGEVRREGQLVFSTSPRRGGRLSSQRQRQGRVGVGGECSWPSRSGSPKWQVPSRGLRSFSEEAAVSHG-----------HGESRMAAAPEGGTRGERAHRQLHARRAPFKDINTTASTCLESTRDTADAAAATSGSSDAAAAADTGHESRGRTRRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFSSYNNANMLIDNSSRINDGSCSCCTTPRQQYFCCESMLRSTNCGSSVSSGNEAAGEREGGTRREARGRRRGRSAGEPGKERGS-GGAGCGESIDAEELFRRKNKMACFNVTYGRWAESYDRAMARRASLERRERLEIERENDLRRQRAEEEFQKWMRSHGRRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LTQMRKESWTDGERDKGVGGSGSTPRSPSSRHSPFAWSEEWAPFSSAGGRGDDGGVRVGXXXXXXXX-XXXXXXXXXXXXXXXXXXXXRDKADRAFREWLGRKKREAQADRQ 553
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig88.16836.1 vs. uniprot
Match: A0A6H5JDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDG8_9PHAE)

HSP 1 Score: 519 bits (1336), Expect = 1.120e-175
Identity = 381/520 (73.27%), Postives = 388/520 (74.62%), Query Frame = 1 
Query:  391 HRESRRTAALKGGTRGERAYRQLHTRRAPFKDINTTASTCLESTRDRAGAAAXXXXXXXXXXXXDTSHESRGRARRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFGSYNNANMLIDNSGRINDGGCSCCTTPRQQFFCCESMLRSTSCGSSVSSGNEAAGEREGRTRRXXXXXXXXXXXXXXXXXXXXXGGAGRGGSIDAEELFRRKNKMASFNVTYGRWAESYDRGMARRASLERRERLEIERENDLRRQRAEEEFQ----KWMRSHGRRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTQIRKEAWTDGERDKGVGGSGGTPRSPSSRHSPFACSEESAPFSSAGGRGDEGGVRVGGSGSGRCGGDXXXXXXXXXXXXXXXXXXXRDKADRAFREWLGRKKREAQADRE-----------------------------------------------------GGEGQQPEEQEAGRVASIGGGMGK 1779
            H ESRRTAA KGGTRGERAYRQLH RR PFKDINTTASTCLESTRD   AAA   XXXXXXXX DTSHESRGR R RSLSWHCR+KLGGDLQQ     ATTPTYSSSAFCPSPSAF SYNN NMLIDNSGRINDG CSCCTTPRQQ+FCCESMLRSTSCGSS+SSGNE+AGEREG T R                     GGAG   SIDAEELFRRKNKMASFNVTYGRWAESYDRGMARRASLERRERLEIERENDLRRQRAEEEFQ    + M                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTQIRKEAWTDGERDKGVGGSG T RSPSSRHSPFA SEESAPFSSAGGRGDEGGV VGGSGSGRCGGDXXXXXXXXXXXXXXXXXX RDKA+RAFREWLGRKK EAQADRE                                                     GGEGQQPEEQEAGRVAS+G GM K
Sbjct:   13 HGESRRTAAPKGGTRGERAYRQLHARRTPFKDINTTASTCLESTRDTTDAAAATSXXXXXXXXADTSHESRGRTRERSLSWHCRQKLGGDLQQXXXXXATTPTYSSSAFCPSPSAFSSYNNTNMLIDNSGRINDGNCSCCTTPRQQYFCCESMLRSTSCGSSISSGNESAGEREGGTSREARGRRGRSAGEPGGKERGS-GGAGCRESIDAEELFRRKNKMASFNVTYGRWAESYDRGMARRASLERRERLEIERENDLRRQRAEEEFQVRRLRLMLCLPFFRVSFRGDGGDTVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTQIRKEAWTDGERDKGVGGSGSTLRSPSSRHSPFAWSEESAPFSSAGGRGDEGGVGVGGSGSGRCGGDXXXXXXXXXXXXXXXXXX-RDKANRAFREWLGRKKGEAQADREVQRRKEENLEKIRVLEVSRRWKKRPVVCAYTYGAKVGAREWQDREEGVRTQAEGGEGQQPEEQEAGRVASMGEGMEK 530
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig88.16836.1 vs. uniprot
Match: A0A6H5JG37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG37_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.910e-62
Identity = 110/130 (84.62%), Postives = 114/130 (87.69%), Query Frame = 1 
Query:    1 MQRRPHFEKARQSTRCRERKAMPREYDPRRYGPIAISSRAPVSSRSVSAAPAGEVRREGQLVFSTSPLRGGRLSSPRQRQRRVGVGGECSWPSRSGIPKWQVASRGLRSFAEEAAVSHGCVYMYNSSDAI 390
            MQRRPHFEKARQ  RCRERK MPREYDPRRYGPIA  S APVSSRS SAAPAG+V R+GQLVFSTSP RG RLSS RQRQRRVGVGGECSWPSRSG PKWQV   GLRSFAEEAAVSH CVYMYNS+DA+
Sbjct:    1 MQRRPHFEKARQLARCRERKVMPREYDPRRYGPIASRSIAPVSSRSASAAPAGQVCRDGQLVFSTSPRRGDRLSSQRQRQRRVGVGGECSWPSRSGTPKWQVEPWGLRSFAEEAAVSHRCVYMYNSADAM 130
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKE5_ECTSI5.320e-25483.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDG8_9PHAE1.120e-17573.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG37_9PHAE1.910e-6284.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:500163..504296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1875
Model size1875
Exons5
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16836.1prot_E-siliculosus-1a_M_contig88.16836.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 500163..504296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936350.6294818-CDS-E-siliculosus-1a_M_contig88:500162..5003301622936350.6294818-CDS-E-siliculosus-1a_M_contig88:500162..500330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 500163..500330 -
1696251038.0739217-CDS-E-siliculosus-1a_M_contig88:500162..5003301696251038.0739217-CDS-E-siliculosus-1a_M_contig88:500162..500330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 500163..500330 -
1622936350.649915-CDS-E-siliculosus-1a_M_contig88:501081..5015911622936350.649915-CDS-E-siliculosus-1a_M_contig88:501081..501591Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 501082..501591 -
1696251038.083487-CDS-E-siliculosus-1a_M_contig88:501081..5015911696251038.083487-CDS-E-siliculosus-1a_M_contig88:501081..501591Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 501082..501591 -
1622936350.6738513-CDS-E-siliculosus-1a_M_contig88:502048..5021951622936350.6738513-CDS-E-siliculosus-1a_M_contig88:502048..502195Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 502049..502195 -
1696251038.0945563-CDS-E-siliculosus-1a_M_contig88:502048..5021951696251038.0945563-CDS-E-siliculosus-1a_M_contig88:502048..502195Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 502049..502195 -
1622936350.6925738-CDS-E-siliculosus-1a_M_contig88:502334..5029951622936350.6925738-CDS-E-siliculosus-1a_M_contig88:502334..502995Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 502335..502995 -
1696251038.1052656-CDS-E-siliculosus-1a_M_contig88:502334..5029951696251038.1052656-CDS-E-siliculosus-1a_M_contig88:502334..502995Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 502335..502995 -
1622936350.7169836-CDS-E-siliculosus-1a_M_contig88:503907..5042961622936350.7169836-CDS-E-siliculosus-1a_M_contig88:503907..504296Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 503908..504296 -
1696251038.119348-CDS-E-siliculosus-1a_M_contig88:503907..5042961696251038.119348-CDS-E-siliculosus-1a_M_contig88:503907..504296Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 503908..504296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16836.1

>prot_E-siliculosus-1a_M_contig88.16836.1 ID=prot_E-siliculosus-1a_M_contig88.16836.1|Name=mRNA_E-siliculosus-1a_M_contig88.16836.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=625bp
MQRRPHFEKARQSTRCRERKAMPREYDPRRYGPIAISSRAPVSSRSVSAA
PAGEVRREGQLVFSTSPLRGGRLSSPRQRQRRVGVGGECSWPSRSGIPKW
QVASRGLRSFAEEAAVSHGCVYMYNSSDAIHRESRRTAALKGGTRGERAY
RQLHTRRAPFKDINTTASTCLESTRDRAGAAAATSGSSDAAAAADTSHES
RGRARRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFGSYN
NANMLIDNSGRINDGGCSCCTTPRQQFFCCESMLRSTSCGSSVSSGNEAA
GEREGRTRREARGRRRGRSAGEPGGRERGSGGAGRGGSIDAEELFRRKNK
MASFNVTYGRWAESYDRGMARRASLERRERLEIERENDLRRQRAEEEFQK
WMRSHGRRSTSSSGGTVAAAAAAAAAATTPAAAPALGARSSYHERASSAS
PRRRRRRLTQIRKEAWTDGERDKGVGGSGGTPRSPSSRHSPFACSEESAP
FSSAGGRGDEGGVRVGGSGSGRCGGDEEEEEEKKRRREEEEQRRRRDKAD
RAFREWLGRKKREAQADREGGEGQQPEEQEAGRVASIGGGMGKEREEEGE
KEEEEEEEEEEEKEEKGRENGVDL*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig88:500163..504296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16836.1 ID=mRNA_E-siliculosus-1a_M_contig88.16836.1|Name=mRNA_E-siliculosus-1a_M_contig88.16836.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4134bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:500163..504296- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAACGGCGGCCGCACTTCGAAAAGGCGAGGCAATCGACAAGGTGCCG
CGAGAGGAAGGCTATGCCGAGAGAGTACGACCCCCGACGATACGGACCCA
TTGCGATCAGTAGCAGAGCCCCTGTGTCATCCCGGTCGGTATCTGCTGCG
CCCGCGGGAGAGGTGCGTCGAGAGGGGCAGCTCGTGTTTTCGACGTCGCC
CTTGCGGGGTGGTCGGCTGAGCTCCCCGCGACAACGACAACGCCGCGTTG
GTGTCGGTGGCGAGTGCTCTTGGCCATCGCGCAGTGGAATACCGAAATGG
CAGGTCGCGTCGAGGGGACTGCGTTCTTTTGCCGAGGAAGCTGCAGTCTC
TCACGGGTGCGTGTACATGTACAACTCATCAGATGCGATGTGAGATGTGA
GACCGTGAAGAAGCAAAACGGCGGTTACACACCAGAGCACACAATTTTCC
TGTGTTGTTGCACGACGCCATGCATGCGAATAGGAGAATTCTGCATCACG
CTCGTCCAATCGCTGTGACGACTAGCGTTGCCATTGCGAGATACGGGCTG
CGGAGCAGGGAATGAGCAATACCCGCGATATGCACGCTTCAACGTTGTTG
GGAACAGATCGGTCAGCAGTAGGGGGTCGAAAACAAAAAATGTCAATTTT
TCAAATTATTACACCCGACTCGTCAGTTGAAAACACACCCGCAAAAAAAA
ATGGCACAGGATGCGCCACCACTGACGTGAGAACATGTTATTTTAGGTTT
TTGGGCAATCCTCGCGGCTGGTTTGCCTCGGCGAGGAAACCAATACAGAA
TAATTAGATTCTTTTGCATAGAGCCAGTGCACAGCAGTATTTCTTCGCTA
CCCAGGGCGAAGCGTGAAAGAATCCAACCCATGCCCCAAAAACAATCGGC
CGCTCTCAGGGAAGAGAGAAAGAGGAACAAGACGCGGGGTGAAGATGATA
AACACCTGTCTTGGCACTTTGACCTACCGCTCGGTTCACGGGGCGAACCA
AACAAGGCGTGCGTGCCAAACCACCGATATTCAGGGCGTTGCTTAAATTG
TGTACTGCTTTGAAGTGTGCGCCCAGCCAAGCAGGCGAACAACATGGCCG
GGGGATCTGTGATTGTTGGATGGTCGACTGAAATTGCGGATACGCGTACC
GCAGCAGGTGCTGCGATGGACATGTGGACCGCAGTTGTTGACAGCTCCTC
TACGGTAGACGACACACACGAACACCGCTACGTTTATCGCCCCACAGCTG
CGGTCCAGCTCTGTTGTGCTAACCGCGGCGTGATCTGTTTCAATTTTGCA
GCCACAGAGAATCGCGCAGGACTGCGGCACTGAAAGGCGGCACGAGAGGA
GAAAGGGCTTACCGGCAGCTGCACACCCGGCGCGCTCCTTTCAAGGACAT
CAACACCACCGCGTCGACTTGTCTCGAGTCGACTCGTGACAGGGCGGGCG
CTGCCGCAGCGACAAGCGGTAGCAGTGACGCCGCCGCCGCTGCTGACACT
AGCCACGAGAGCAGAGGTCGCGCGCGAAGGAGGTCTCTCAGCTGGCACTG
CCGCGAGAAACTCGGCGGTGATTTACAACAGCGACAACAGCCTCCTGCGA
CAACTCCGACGTACTCCTCTTCCGCCTTCTGTCCATCTCCTTCTGCCTTC
GGCAGCTACAACAACGCCAACATGCTGATCGACAACAGCGGCAGAATCAA
CGACGGCGGTTGCAGCTGCTGTACCACTCCGCGACAGCAATTTTTTTGCT
GTGAGTCGATGCTGCGGAGCACTAGCTGCGGCAGTAGCGTCAGCAGTGGC
AACGAGGCAGCAGGCGAAAGAGAAGGAAGGACGAGGCGCGAGGCCCGGGG
GAGGAGGCGTGGGCGGTCGGCTGGAGAACCGGGCGGCAGGGAGAGGGGGT
CAGGAGGGGCTGGACGTGGCGGGAGCATTGACGCGGAAGAATTGTTTCGC
CGGAAAAACAAGGTGCCTCCAATGAAATCCTGCTGTACAGCAAGTAGCCA
CCTGATTGTTGCTGTGGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTT
TTGAACAGCACCTTGCTTCCTGTTGCTGTTGTCTCCTTGCGGTGCGGGCA
GATGGCATCCTTCAACGTGACCTACGGAAGGTGGGCGGAGAGCTACGACC
GCGGCATGGCCAGGCGCGCGTCCCTCGAGCGGAGAGAGCGCCTCGAGATC
GAGCGGGAGAACGACCTCAGGCGCCAGCGCGCTGAAGAAGAGTTTCAGGT
GCGACGCCTACGCCTCATGCTTTGCTTGCGATCTGATCGGGTTTCTTTCC
GCGGAGATGGTAGTCTACGCCTTCAGGAGAAAGCGGGAGAGAAAAGCGCC
AGGACCAAGCGGTTACTGAAGTTTCAGCTGGGATGAACATCACCTCTTCC
ATCGCGGGAGAAATCTACTTTCGGAGCTCTGGAGGTCATGTTATCTGCAG
GCCGCCACATACCCTGGAGGTTTCCTCTCGCTCCCGTTTAGGTCTCAGCG
GTAACAGACCACCTGGTTGCATTAAGCATCCACGACCTGAATCCACATCG
TAGACTGCAATGCCAACATTTCCCACGAAACGTTTCAATCCGTTTTGTTT
TTTTGGGGGGGAGAGGGTTACGCTTGCAATGGCGTTTAAGGTGCGTGGCT
TTCCTCTGATGTAAAACTCCAAATTCTCCTACTTTTCTGCTGCTCTGTTC
TCCAGAAGTGGATGCGGAGCCACGGACGGCGATCGACTTCTTCTTCAGGT
GGTACCGTTGCTGCTGCCGCTGCTGCCGCTGCTGCCGCGACTACTCCTGC
CGCCGCGCCTGCTCTTGGCGCGAGATCGTCTTACCACGAACGAGCTTCGT
CCGCTTCCCCCCGCCGTCGACGGCGGCGGCTGACCCAAATCAGGAAGGAG
GCGTGGACGGACGGGGAGCGGGACAAAGGGGTCGGCGGAAGCGGTGGCAC
TCCTCGTAGCCCTTCCAGCCGCCACTCGCCGTTCGCTTGTAGCGAAGAAT
CGGCTCCTTTCTCCTCGGCGGGAGGGCGAGGGGATGAGGGCGGTGTTAGG
GTTGGCGGTAGCGGTAGCGGCCGTTGCGGCGGCGACGAGGAGGAGGAGGA
AGAGAAGAAGCGGAGGCGGGAAGAGGAGGAGCAGCGACGGCGGCGCGACA
AGGCGGATCGAGCCTTCCGCGAGTGGCTCGGCCGCAAGAAGAGGGAGGCG
CAGGCCGACCGCGAGGTGCAAAGGCGGAAGGAGGAGACTCTCGAAAAACT
TAGGTGTGTGTGTTTCTGCTCTGTGTGTATGTCGTTGTTCAACCTGGTTC
TTGTGGGGGGCTTGGTTTGCACGCAATACGCAGCCCATGGTGATTCGACA
TTGTGGCCGATAAATCAAGCGGGATTCCGCAGAATTGGTGGTCCCGTAAT
CGTTTTCGTGCGGGTGGGTAAGTAGGCGGGTGACACAGAGGCCGTAGGGA
ATGACTCATTACTACCGGTAGATCGACCAAAATTGTATTTGATTTGTTGC
GTTCGTTGTCTCGTAGGACCTGCCGGCCGGTGACTGCAGGATAAAGTCGC
GTGTGCTCCTCCTTGAGAGTCTACGGCACTACTCTAGTCCACCCCTGGCA
CAAAACCGAAACTTGGCCAAGGGTGTGTGGTTGGTTGGATGGGTGAGGCA
AGGAATCGTTAAGTGATGTGTCCCCCCCACCGCCTTCTCGATTTTGGCCT
TGTCGAGGTTTGGAGCAACGCATCCCCACCGCAGAACCCCAGTTGCCCGC
GCTGTATACCACAGCTGCTGCTACCGTAGGCCGGCGCTAGACTTGTGACA
TTTCATCGCTGCAAACCCTCACGAAAATTGTGTGCGCGAATGAAGGGTTT
TGGAGGCGTCGCGGCGGTGGAAAAAGCGGCCGGTTGTCTGCGCCTACACG
TACGGCGCGAAGGTCGGGGCAAGGGAGTGGCGGGACCGAGAGGAGGGGGT
ACACACACAGGCGGAGGGAGGGGAGGGGCAGCAGCCGGAGGAGCAGGAGG
CCGGGCGGGTAGCAAGCATAGGGGGAGGAATGGGGAAGGAGCGGGAAGAG
GAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGA
GGAGAAGGGACGGGAAAATGGCGTGGACCTGTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:500163..504296-

>mRNA_E-siliculosus-1a_M_contig88.16836.1 ID=mRNA_E-siliculosus-1a_M_contig88.16836.1|Name=mRNA_E-siliculosus-1a_M_contig88.16836.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:500163..504296- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAACGGCGGCCGCACTTCGAAAAGGCGAGGCAATCGACAAGGTGCCG
CGAGAGGAAGGCTATGCCGAGAGAGTACGACCCCCGACGATACGGACCCA
TTGCGATCAGTAGCAGAGCCCCTGTGTCATCCCGGTCGGTATCTGCTGCG
CCCGCGGGAGAGGTGCGTCGAGAGGGGCAGCTCGTGTTTTCGACGTCGCC
CTTGCGGGGTGGTCGGCTGAGCTCCCCGCGACAACGACAACGCCGCGTTG
GTGTCGGTGGCGAGTGCTCTTGGCCATCGCGCAGTGGAATACCGAAATGG
CAGGTCGCGTCGAGGGGACTGCGTTCTTTTGCCGAGGAAGCTGCAGTCTC
TCACGGGTGCGTGTACATGTACAACTCATCAGATGCGATATGCAACGGCG
GCCGCACTTCGAAAAGGCGAGGCAATCGACAAGGTGCCGCGAGAGGAAGG
CTATGCCGAGAGAGTACGACCCCCGACGATACGGACCCATTGCGATCAGT
AGCAGAGCCCCTGTGTCATCCCGGTCGGTATCTGCTGCGCCCGCGGGAGA
GGTGCGTCGAGAGGGGCAGCTCGTGTTTTCGACGTCGCCCTTGCGGGGTG
GTCGGCTGAGCTCCCCGCGACAACGACAACGCCGCGTTGGTGTCGGTGGC
GAGTGCTCTTGGCCATCGCGCAGTGGAATACCGAAATGGCAGGTCGCGTC
GAGGGGACTGCGTTCTTTTGCCGAGGAAGCTGCAGTCTCTCACGGGTGCG
TGTACATGTACAACTCATCAGATGCGATCCACAGAGAATCGCGCAGGACT
GCGGCACTGAAAGGCGGCACGAGAGGAGAAAGGGCTTACCGGCAGCTGCA
CACCCGGCGCGCTCCTTTCAAGGACATCAACACCACCGCGTCGACTTGTC
TCGAGTCGACTCGTGACAGGGCGGGCGCTGCCGCAGCGACAAGCGGTAGC
AGTGACGCCGCCGCCGCTGCTGACACTAGCCACGAGAGCAGAGGTCGCGC
GCGAAGGAGGTCTCTCAGCTGGCACTGCCGCGAGAAACTCGGCGGTGATT
TACAACAGCGACAACAGCCTCCTGCGACAACTCCGACGTACTCCTCTTCC
GCCTTCTGTCCATCTCCTTCTGCCTTCGGCAGCTACAACAACGCCAACAT
GCTGATCGACAACAGCGGCAGAATCAACGACGGCGGTTGCAGCTGCTGTA
CCACTCCGCGACAGCAATTTTTTTGCTGTGAGTCGATGCTGCGGAGCACT
AGCTGCGGCAGTAGCGTCAGCAGTGGCAACGAGGCAGCAGGCGAAAGAGA
AGGAAGGACGAGGCGCGAGGCCCGGGGGAGGAGGCGTGGGCGGTCGGCTG
GAGAACCGGGCGGCAGGGAGAGGGGGTCAGGAGGGGCTGGACGTGGCGGG
AGCATTGACGCGGAAGAATTGTTTCGCCGGAAAAACAAGCCACAGAGAAT
CGCGCAGGACTGCGGCACTGAAAGGCGGCACGAGAGGAGAAAGGGCTTAC
CGGCAGCTGCACACCCGGCGCGCTCCTTTCAAGGACATCAACACCACCGC
GTCGACTTGTCTCGAGTCGACTCGTGACAGGGCGGGCGCTGCCGCAGCGA
CAAGCGGTAGCAGTGACGCCGCCGCCGCTGCTGACACTAGCCACGAGAGC
AGAGGTCGCGCGCGAAGGAGGTCTCTCAGCTGGCACTGCCGCGAGAAACT
CGGCGGTGATTTACAACAGCGACAACAGCCTCCTGCGACAACTCCGACGT
ACTCCTCTTCCGCCTTCTGTCCATCTCCTTCTGCCTTCGGCAGCTACAAC
AACGCCAACATGCTGATCGACAACAGCGGCAGAATCAACGACGGCGGTTG
CAGCTGCTGTACCACTCCGCGACAGCAATTTTTTTGCTGTGAGTCGATGC
TGCGGAGCACTAGCTGCGGCAGTAGCGTCAGCAGTGGCAACGAGGCAGCA
GGCGAAAGAGAAGGAAGGACGAGGCGCGAGGCCCGGGGGAGGAGGCGTGG
GCGGTCGGCTGGAGAACCGGGCGGCAGGGAGAGGGGGTCAGGAGGGGCTG
GACGTGGCGGGAGCATTGACGCGGAAGAATTGTTTCGCCGGAAAAACAAG
ATGGCATCCTTCAACGTGACCTACGGAAGGTGGGCGGAGAGCTACGACCG
CGGCATGGCCAGGCGCGCGTCCCTCGAGCGGAGAGAGCGCCTCGAGATCG
AGCGGGAGAACGACCTCAGGCGCCAGCGCGCTGAAGAAGAGTTTCAGATG
GCATCCTTCAACGTGACCTACGGAAGGTGGGCGGAGAGCTACGACCGCGG
CATGGCCAGGCGCGCGTCCCTCGAGCGGAGAGAGCGCCTCGAGATCGAGC
GGGAGAACGACCTCAGGCGCCAGCGCGCTGAAGAAGAGTTTCAGAAGTGG
ATGCGGAGCCACGGACGGCGATCGACTTCTTCTTCAGGTGGTACCGTTGC
TGCTGCCGCTGCTGCCGCTGCTGCCGCGACTACTCCTGCCGCCGCGCCTG
CTCTTGGCGCGAGATCGTCTTACCACGAACGAGCTTCGTCCGCTTCCCCC
CGCCGTCGACGGCGGCGGCTGACCCAAATCAGGAAGGAGGCGTGGACGGA
CGGGGAGCGGGACAAAGGGGTCGGCGGAAGCGGTGGCACTCCTCGTAGCC
CTTCCAGCCGCCACTCGCCGTTCGCTTGTAGCGAAGAATCGGCTCCTTTC
TCCTCGGCGGGAGGGCGAGGGGATGAGGGCGGTGTTAGGGTTGGCGGTAG
CGGTAGCGGCCGTTGCGGCGGCGACGAGGAGGAGGAGGAAGAGAAGAAGC
GGAGGCGGGAAGAGGAGGAGCAGCGACGGCGGCGCGACAAGGCGGATCGA
GCCTTCCGCGAGTGGCTCGGCCGCAAGAAGAGGGAGGCGCAGGCCGACCG
CGAGAAGTGGATGCGGAGCCACGGACGGCGATCGACTTCTTCTTCAGGTG
GTACCGTTGCTGCTGCCGCTGCTGCCGCTGCTGCCGCGACTACTCCTGCC
GCCGCGCCTGCTCTTGGCGCGAGATCGTCTTACCACGAACGAGCTTCGTC
CGCTTCCCCCCGCCGTCGACGGCGGCGGCTGACCCAAATCAGGAAGGAGG
CGTGGACGGACGGGGAGCGGGACAAAGGGGTCGGCGGAAGCGGTGGCACT
CCTCGTAGCCCTTCCAGCCGCCACTCGCCGTTCGCTTGTAGCGAAGAATC
GGCTCCTTTCTCCTCGGCGGGAGGGCGAGGGGATGAGGGCGGTGTTAGGG
TTGGCGGTAGCGGTAGCGGCCGTTGCGGCGGCGACGAGGAGGAGGAGGAA
GAGAAGAAGCGGAGGCGGGAAGAGGAGGAGCAGCGACGGCGGCGCGACAA
GGCGGATCGAGCCTTCCGCGAGTGGCTCGGCCGCAAGAAGAGGGAGGCGC
AGGCCGACCGCGAGGGAGGGGAGGGGCAGCAGCCGGAGGAGCAGGAGGCC
GGGCGGGTAGCAAGCATAGGGGGAGGAATGGGGAAGGAGCGGGAAGAGGA
GGGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGAAGGGACGGGAAAATGGCGTGGACCTGTAAGGAGGGGAGGGGCAGCAG
CCGGAGGAGCAGGAGGCCGGGCGGGTAGCAAGCATAGGGGGAGGAATGGG
GAAGGAGCGGGAAGAGGAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGGAGGAGAAGGGACGGGAAAATGGCGTGGACCTGTAA
back to top