mRNA_E-siliculosus-1a_M_contig88.16832.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16832.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16832.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:408275..409911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size243
Model size243
Exons2
Ec32 orthologEc-16_002460.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936350.293614-CDS-E-siliculosus-1a_M_contig88:408274..4084241622936350.293614-CDS-E-siliculosus-1a_M_contig88:408274..408424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 408275..408424 -
1696251037.878144-CDS-E-siliculosus-1a_M_contig88:408274..4084241696251037.878144-CDS-E-siliculosus-1a_M_contig88:408274..408424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 408275..408424 -
1622936350.308222-CDS-E-siliculosus-1a_M_contig88:409818..4099111622936350.308222-CDS-E-siliculosus-1a_M_contig88:409818..409911Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 409819..409911 -
1696251037.8889627-CDS-E-siliculosus-1a_M_contig88:409818..4099111696251037.8889627-CDS-E-siliculosus-1a_M_contig88:409818..409911Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 409819..409911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16832.1prot_E-siliculosus-1a_M_contig88.16832.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 408275..409911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16832.1

>prot_E-siliculosus-1a_M_contig88.16832.1 ID=prot_E-siliculosus-1a_M_contig88.16832.1|Name=mRNA_E-siliculosus-1a_M_contig88.16832.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=81bp
MPLTHTKEGKKGPQVVRESTAASLSASGTAVSFLRSLQQRVHFVWYSSCA
PLLPTARLGRSQTEDKKWDNTARRWGHYEY*
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mRNA from alignment at E-siliculosus-1a_M_contig88:408275..409911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16832.1 ID=mRNA_E-siliculosus-1a_M_contig88.16832.1|Name=mRNA_E-siliculosus-1a_M_contig88.16832.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1637bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:408275..409911- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCTCACACACACCAAAGAGGGAAAAAAGGGGCCTCAGGTTGTTCG
TGAGTCAACCGCTGCCAGTCTCTCAGCCTCGGGTACTGCCGTAGTCCGGA
ACACCGCTATCGCGACAGGCAAGTCATGCTGCATGCTGTCGTTCTACGGA
AAGGGAAAAGATACCGGTCTTCTCCCCCTTGTGTGACGAACGGAATAGGT
AACGCGCCCTTGTCTAAGGAAGAAGAAAGCGAGCCGCATTCGGCAAGTGA
GGAAGCAACAAGGCCGAGTTCGGGTATCTTGCAGGATCGCGTGGGTCGAC
GCGTGGTTGCATGTGGTGGAGGTTTCAGCAAACAACAGGCCCGATCGACA
GCGTGACCGCCGTGACTAACACGGAGAAATGGGCGACGACCCGGACAGTT
CAGCCTCGAGGCCGAAGGACGACGCAGCGAGGTGTTGCAGAAGAAACGAA
AGAGGGGCACGACATGCACGGCAACATCACGAGCCTACGAGAAGCGCTGG
TGGTGATGTCAAGGTTTAGCCGGAGAACCAGGTATCACCCAGAGCGTTTG
CGGAGATGCTTGGCGTGGAGCTGTGAACTTGGAAAGAAATTTTCCTGGCG
CCGATCTGTCGAAGCAGATATACTCTTATCGGTTTGCCCCAATCGAAACA
GAGTGCGCCAAGTGTACGAAGAAAAAAATCAGGCACCGTTGATGATTTCG
CACCTCGGTTTTTGGTTTTTGGGACAATTTTTGAGGTCTATTTACACTCT
GTTAGTGACTCTTTAGGTCTAACCGATGTTGCACTTTGCAAGGCTAGGTT
CCTCACGCGAGCAAGGCTAGGTTCCTCACCCCACATCTACCCTAACCCTA
ACCCTCACCCACGGCCAAAGCACGGCCTAGCGGCCGCGAACTGGTCGAGA
ACGCGGCTGCGCCGCGTTCTCAGAATGCGGAACGGCGAGAGGGCGCTGGA
GAGGGTCAAGGCTAGGAACCAACGCCGGACCAATCAGAGGGCGTGAAATT
GCTTAGATAGGAAGAGTCACTAACAGGTTGCAAAAACTAGTGCAATTTTT
CAATTTGGAACCATCTCTGGAGTCTTCCGTATTCAGCGCGCGGTATGCAT
ATCTTCCGCCCAAAAGTAATACGTCAAACGCAAACCGAACAACTACACGG
GGCTGAGGGATGCGTTAAAGGCACGGCGGCACAGGAAGGGACGGAACGAC
CCTGGATATCAACGAAAACAACGTCACATACATGTAGTTTTCACTTGAAC
GCAACGAAATAGGTCCAAGAGTTTGCATTCTGTTCCAAAAGGGTGTATCG
TTTTGTAGCTAGCGCTGTCCGGAGAGGACGCACGAAGAGGAGAAGCAACC
ACTGCACAGCACGTTTCTTTCGAGTATGCACGCGTACGCCGACCCTGCTG
TTGTAGCCCGAATTTTTATCGTCAACGCGGTAGCCAGGCCCACCATCCGC
GTTTGTTTGTCGTGCAGACAAAGTTGTTGTTCATCAGTCATTTCTCCGTT
CTCTCCAGCAACGTGTTCATTTCGTTTGGTACTCTTCGTGTGCACCACTC
CTGCCGACAGCTAGGCTAGGCCGAAGCCAAACAGAAGACAAGAAATGGGA
CAACACCGCGCGGAGATGGGGTCACTACGAATATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:408275..409911-

>mRNA_E-siliculosus-1a_M_contig88.16832.1 ID=mRNA_E-siliculosus-1a_M_contig88.16832.1|Name=mRNA_E-siliculosus-1a_M_contig88.16832.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:408275..409911- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCTCACACACACCAAAGAGGGAAAAAAGGGGCCTCAGGTTGTTCG
TGAGTCAACCGCTGCCAGTCTCTCAGCCTCGGGTACTGCCGTAATGCCTC
TCACACACACCAAAGAGGGAAAAAAGGGGCCTCAGGTTGTTCGTGAGTCA
ACCGCTGCCAGTCTCTCAGCCTCGGGTACTGCCGTATCATTTCTCCGTTC
TCTCCAGCAACGTGTTCATTTCGTTTGGTACTCTTCGTGTGCACCACTCC
TGCCGACAGCTAGGCTAGGCCGAAGCCAAACAGAAGACAAGAAATGGGAC
AACACCGCGCGGAGATGGGGTCACTACGAATATTGATCATTTCTCCGTTC
TCTCCAGCAACGTGTTCATTTCGTTTGGTACTCTTCGTGTGCACCACTCC
TGCCGACAGCTAGGCTAGGCCGAAGCCAAACAGAAGACAAGAAATGGGAC
AACACCGCGCGGAGATGGGGTCACTACGAATATTGA
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