mRNA_E-siliculosus-1a_M_contig88.16824.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16824.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16824.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16824.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.150e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG
Sbjct:   35 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 100
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16824.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.970e-25
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            +EDG+ALGACS+++E+A SFK  LGS DT VILPGYEGLLRRPM VD TAQALLN ADSADGG +G
Sbjct:   51 MEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKG 116
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16824.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.160e-19
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    7 DGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            D VALGA   MIE+A+SFK VL S+DTDVIL GYEGL+RRP+ V  TA+A LN  DSADGG RG
Sbjct:   35 DDVALGAHLGMIEHAKSFKDVLCSKDTDVILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRG 98
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16824.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.640e-18
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 DGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            DGV L AC  +I++A+SFK VL S+DTDVILPGYEGLLRRPM VD TA+ LLN  + ADGG RG
Sbjct:   31 DGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRG 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE5.150e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE2.970e-2575.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI5.160e-1968.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG7_9PHAE1.640e-1868.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:340428..341089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size198
Model size198
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936348.780568-CDS-E-siliculosus-1a_M_contig88:340427..3405231622936348.780568-CDS-E-siliculosus-1a_M_contig88:340427..340523Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 340428..340523 -
1696251037.106552-CDS-E-siliculosus-1a_M_contig88:340427..3405231696251037.106552-CDS-E-siliculosus-1a_M_contig88:340427..340523Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 340428..340523 -
1622936348.8032444-CDS-E-siliculosus-1a_M_contig88:340987..3410891622936348.8032444-CDS-E-siliculosus-1a_M_contig88:340987..341089Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 340988..341089 -
1696251037.1162417-CDS-E-siliculosus-1a_M_contig88:340987..3410891696251037.1162417-CDS-E-siliculosus-1a_M_contig88:340987..341089Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 340988..341089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16824.1prot_E-siliculosus-1a_M_contig88.16824.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 340428..341089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16824.1

>prot_E-siliculosus-1a_M_contig88.16824.1 ID=prot_E-siliculosus-1a_M_contig88.16824.1|Name=mRNA_E-siliculosus-1a_M_contig88.16824.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=66bp
VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATA
QALLNEADSADGGTRG
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mRNA from alignment at E-siliculosus-1a_M_contig88:340428..341089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16824.1 ID=mRNA_E-siliculosus-1a_M_contig88.16824.1|Name=mRNA_E-siliculosus-1a_M_contig88.16824.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:340428..341089- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTACGC
TAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCTAC
CGGTAAGAGCACCAGACGCACGCACGGTATTAACCAGCTTGGGGCGTGGT
TTTGGCACGGCCGACCTCGGCAATACCGTAATCTTCGGGGTCGTACACCC
CCCGTGGTGTTCATGGAAAAAATAAAGTCCCCATCCCATTTGTTCTATTT
TCCCCCGAGTAAGCGCAAGGAAAAAATCTAGAGGCAAAGTTCATGCCCTC
CCAGGGTTGGCGGCAACGACGACCACGGTGTTTCATGTCTTGGTGTAGCG
CGCAATGTTTCGAGCACGACGTGCCACAGTCATCGCTGCGAAACATTAGG
TGGGTGTACTTCCGCAAGGAACTGGTCGTGTTTCATGCTTCATCAAAACC
CAGTGTATTGGGTGAGCAATTTTTGTGCAACCATGCATCGTGCACGTGCT
ATAGGCACACCATGGGAGGAAAATGATGCCACCAGAAACACAACCGCCTC
CGGTCGTTTTTTGCAGGGATACGAAGGATTGTTGAGGCGACCCATGCTCG
TGGATGCAACGGCTCAAGCCCTGCTCAACGAGGCGGACAGCGCGGACGGT
GGGACCAGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:340428..341089-

>mRNA_E-siliculosus-1a_M_contig88.16824.1 ID=mRNA_E-siliculosus-1a_M_contig88.16824.1|Name=mRNA_E-siliculosus-1a_M_contig88.16824.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:340428..341089- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTACGC
TAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCTAC
CGGTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTAC
GCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCT
ACCGGGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGG
CTCAAGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGG
GGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGGCTCA
AGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGG
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