mRNA_E-siliculosus-1a_M_contig88.16815.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16815.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16815.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16815.1 vs. uniprot
Match: D7G889_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G889_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 4.720e-172
Identity = 261/302 (86.42%), Postives = 263/302 (87.09%), Query Frame = 1 
Query:    1 MSGGCGVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGGSGGGGSVAVDLVGDAGTETYMFHRGRCKLFRSFVHHGKLTVCTAGMRHQQIMLSEADPVLLGELCDTLVGENSSSHTSNXXXXXXXXXXXXXXXXXXARARAQPQSRSHRAPAATSGCTRRRPPAAVVPGRGGISAGPLAPRSVNANVRSPTGQERGGDSVHQRGDKKGRRMGVPSDRPPEAAEEGGVARKSTRKVSPKKSAGGRGPPREVALSEDQQRAVDLVVGGRSVFFTASTFRGLCLAY*PGAHRKEETWEPLW 906
            MS GCGVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGG  GGGSVAVDLVGDAGTETYMF RGRCKLFRSFVHHGKLTVCTAGMRHQ IMLSEADPV LGELCDTLVGENSSSHTSN                   RARAQ Q RSHRAP AT GCTRRRPP AVVPGRGG SAGPLAPRSVNANVRSPTGQERGGDSVHQRGDKKGRRM +P+DRPPEAAEEGGVARKSTRK SPKKS   RGPPREVALSEDQQRAVDLVVGGRSVFFTASTFRGLCLA  PGAHRKEE WEPLW
Sbjct:    1 MSRGCGVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGG--GGGSVAVDLVGDAGTETYMFQRGRCKLFRSFVHHGKLTVCTAGMRHQ-IMLSEADPVQLGELCDTLVGENSSSHTSNTTTNSRRSPGSSTASTTAVRARAQSQPRSHRAPGATGGCTRRRPPTAVVPGRGGTSAGPLAPRSVNANVRSPTGQERGGDSVHQRGDKKGRRMRLPADRPPEAAEEGGVARKSTRKASPKKSVEERGPPREVALSEDQQRAVDLVVGGRSVFFTASTFRGLCLACQPGAHRKEEKWEPLW 299
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G889_ECTSI4.720e-17286.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:292543..294347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size864
Model size906
Exons3
Ec32 orthologEc-00_010710.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16815.1prot_E-siliculosus-1a_M_contig88.16815.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 292543..294305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936348.0225303-CDS-E-siliculosus-1a_M_contig88:292542..2928181622936348.0225303-CDS-E-siliculosus-1a_M_contig88:292542..292818Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 292543..292818 +
1696251036.7916455-CDS-E-siliculosus-1a_M_contig88:292542..2928181696251036.7916455-CDS-E-siliculosus-1a_M_contig88:292542..292818Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 292543..292818 +
1622936348.039365-CDS-E-siliculosus-1a_M_contig88:293392..2939451622936348.039365-CDS-E-siliculosus-1a_M_contig88:293392..293945Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 293393..293945 +
1696251036.802666-CDS-E-siliculosus-1a_M_contig88:293392..2939451696251036.802666-CDS-E-siliculosus-1a_M_contig88:293392..293945Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 293393..293945 +
1622936348.0542994-CDS-E-siliculosus-1a_M_contig88:294270..2943051622936348.0542994-CDS-E-siliculosus-1a_M_contig88:294270..294305Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 294271..294305 +
1696251036.8114934-CDS-E-siliculosus-1a_M_contig88:294270..2943051696251036.8114934-CDS-E-siliculosus-1a_M_contig88:294270..294305Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 294271..294305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936348.073438-UTR-E-siliculosus-1a_M_contig88:294305..2943471622936348.073438-UTR-E-siliculosus-1a_M_contig88:294305..294347Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 294306..294347 +
1696251036.8202887-UTR-E-siliculosus-1a_M_contig88:294305..2943471696251036.8202887-UTR-E-siliculosus-1a_M_contig88:294305..294347Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 294306..294347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16815.1

>prot_E-siliculosus-1a_M_contig88.16815.1 ID=prot_E-siliculosus-1a_M_contig88.16815.1|Name=mRNA_E-siliculosus-1a_M_contig88.16815.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=288bp
MSGGCGVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGGSGGGGSV
AVDLVGDAGTETYMFHRGRCKLFRSFVHHGKLTVCTAGMRHQQIMLSEAD
PVLLGELCDTLVGENSSSHTSNTTNNSRRTPGSSTASTTAARARAQPQSR
SHRAPAATSGCTRRRPPAAVVPGRGGISAGPLAPRSVNANVRSPTGQERG
GDSVHQRGDKKGRRMGVPSDRPPEAAEEGGVARKSTRKVSPKKSAGGRGP
PREVALSEDQQRAVDLVVGGRSVFFTASTFRGLCLAY*
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mRNA from alignment at E-siliculosus-1a_M_contig88:292543..294347+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16815.1 ID=mRNA_E-siliculosus-1a_M_contig88.16815.1|Name=mRNA_E-siliculosus-1a_M_contig88.16815.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1805bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:292543..294347+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGGAGGCTGCGGGGTGGTGTGCGGGGTGGTGGTGGTCGAAGAGCG
GGACGCGCGGGGGTCTTCCTTGGGCCGCAGCCGAAGGACGGGAACGCTCG
TACACGCTACGCCACGCGGCACCGGCGGTAGCGGCGGCGGCGGCAGTGTA
GCGGTCGATTTGGTGGGAGATGCGGGTACCGAGACCTACATGTTTCATAG
GGGGAGATGCAAGCTGTTTCGGTCCTTCGTCCACCATGGGAAGCTCACCG
TGTGCACGGCGGGCATGAGGCATCAGGTGCGGGTGTATCTGTGCCTGTCC
GAAGAGAGGCACGCAGATGATGACGTCTCGTTTCGATCGCGTCCACGACG
GGGTGTGTTCTTGTCTGTTACGTGTTGCTGGTGCTGCTACTACTGCTTGA
GTCTTGTTGCTCTGGCCGTCAACACTGTCATTGCTGCCTCGTTGGAGGTG
ATAGTGGGGATGACCAGCCCTGTTGGTGACGCCGTTTCTGCGGCCTTCTA
TCGACAAAGGAAAGTCCGGGGGCCAAGGGCTCGCAATCTTTTTTTGTGCG
CCCATGAAGAGACACTTCTTCAAAGGCAGCGTAGATCGACTTGTTGGTGC
TGCGGTTTGCACCCAGTGACTGCGGCATTCTCGGTCTATGTTCGTAGAAC
ACGTCTCACACAGCACCGGACTTGCGCGCTTCCTCTTGCCGTAACCTTCT
GCTAATGGTTTCAACTTCTCTTCGCGTCCGTCACCACCGCTCCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCCGTCCGTGCCGCTTGTGCTGTATC
TACACGCGTACGAACGTTGCCCCCGCGACGTACATAAAAAAAAAATCGAG
CAGATCATGTTAAGCGAGGCGGACCCGGTTCTGCTTGGCGAGCTTTGCGA
CACCCTCGTGGGAGAGAACAGCAGCAGTCACACAAGCAACACCACCAACA
ACAGCCGAAGGACCCCCGGTTCCTCAACAGCAAGCACCACGGCTGCCCGC
GCGCGAGCCCAGCCGCAGTCTCGATCCCACCGCGCGCCCGCCGCCACCAG
CGGATGCACCAGGAGGAGACCGCCGGCAGCGGTGGTTCCGGGGAGGGGAG
GTATATCCGCGGGGCCCCTCGCCCCCCGCAGCGTCAACGCCAATGTGCGC
AGTCCGACCGGGCAGGAAAGAGGTGGGGATAGCGTCCACCAGAGGGGGGA
CAAGAAGGGGCGGAGAATGGGGGTCCCGTCGGACAGGCCGCCGGAGGCGG
CGGAAGAGGGGGGGGTGGCGCGAAAGAGCACGAGGAAGGTGAGCCCCAAG
AAGAGCGCGGGGGGAAGGGGGCCGCCGAGAGAGGTCGCCCTGTCGGAGGA
CCAGCAGAGAGCCGTGGACCTCGTTGTCGGCGGCAGGAGCGTCTTTTTCA
CCGGTGAGTGAGACACGGCAAGCAGAGAGACAAAAGCCTTGCGGGGGGTG
ATGGTGGGGGGGAGCGGAGGGCGGGGTACTCGGTTGTCGATTGCGCTAGT
CGTTCCACCATTGGTCACGCATGGCATTTCAGACGAAGAACAGCAGTTCG
TGTTCTCGATGTATATAGAGACAGGGGACTCGTCCCGTGCCTTTTGACAA
AATCTGGGGTCTGCCTCGCCCAACGGCCTGTAGTCTGTCTCATCCGGGGT
GGAGGACGCGGTGCAAAACAGCTGCTGTGCATATGCCGTGTGTGTGTGTG
TGTGTCGTCCCATGTGTTACGGCACCAGCCAGCACCTTTCGGGGGTTATG
CTTGGCGTATTAGCCCGGGGCACACAGAAAGGAGGAAACATGGGAACCTT
TGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:292543..294347+

>mRNA_E-siliculosus-1a_M_contig88.16815.1 ID=mRNA_E-siliculosus-1a_M_contig88.16815.1|Name=mRNA_E-siliculosus-1a_M_contig88.16815.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1728bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:292543..294347+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGGAGGCTGCGGGGTGGTGTGCGGGGTGGTGGTGGTCGAAGAGCG
GGACGCGCGGGGGTCTTCCTTGGGCCGCAGCCGAAGGACGGGAACGCTCG
TACACGCTACGCCACGCGGCACCGGCGGTAGCGGCGGCGGCGGCAGTGTA
GCGGTCGATTTGGTGGGAGATGCGGGTACCGAGACCTACATGTTTCATAG
GGGGAGATGCAAGCTGTTTCGGTCCTTCGTCCACCATGGGAAGCTCACCG
TGTGCACGGCGGGCATGAGGCATCAGATGTCGGGAGGCTGCGGGGTGGTG
TGCGGGGTGGTGGTGGTCGAAGAGCGGGACGCGCGGGGGTCTTCCTTGGG
CCGCAGCCGAAGGACGGGAACGCTCGTACACGCTACGCCACGCGGCACCG
GCGGTAGCGGCGGCGGCGGCAGTGTAGCGGTCGATTTGGTGGGAGATGCG
GGTACCGAGACCTACATGTTTCATAGGGGGAGATGCAAGCTGTTTCGGTC
CTTCGTCCACCATGGGAAGCTCACCGTGTGCACGGCGGGCATGAGGCATC
AGCAGATCATGTTAAGCGAGGCGGACCCGGTTCTGCTTGGCGAGCTTTGC
GACACCCTCGTGGGAGAGAACAGCAGCAGTCACACAAGCAACACCACCAA
CAACAGCCGAAGGACCCCCGGTTCCTCAACAGCAAGCACCACGGCTGCCC
GCGCGCGAGCCCAGCCGCAGTCTCGATCCCACCGCGCGCCCGCCGCCACC
AGCGGATGCACCAGGAGGAGACCGCCGGCAGCGGTGGTTCCGGGGAGGGG
AGGTATATCCGCGGGGCCCCTCGCCCCCCGCAGCGTCAACGCCAATGTGC
GCAGTCCGACCGGGCAGGAAAGAGGTGGGGATAGCGTCCACCAGAGGGGG
GACAAGAAGGGGCGGAGAATGGGGGTCCCGTCGGACAGGCCGCCGGAGGC
GGCGGAAGAGGGGGGGGTGGCGCGAAAGAGCACGAGGAAGGTGAGCCCCA
AGAAGAGCGCGGGGGGAAGGGGGCCGCCGAGAGAGGTCGCCCTGTCGGAG
GACCAGCAGAGAGCCGTGGACCTCGTTGTCGGCGGCAGGAGCGTCTTTTT
CACCGCAGATCATGTTAAGCGAGGCGGACCCGGTTCTGCTTGGCGAGCTT
TGCGACACCCTCGTGGGAGAGAACAGCAGCAGTCACACAAGCAACACCAC
CAACAACAGCCGAAGGACCCCCGGTTCCTCAACAGCAAGCACCACGGCTG
CCCGCGCGCGAGCCCAGCCGCAGTCTCGATCCCACCGCGCGCCCGCCGCC
ACCAGCGGATGCACCAGGAGGAGACCGCCGGCAGCGGTGGTTCCGGGGAG
GGGAGGTATATCCGCGGGGCCCCTCGCCCCCCGCAGCGTCAACGCCAATG
TGCGCAGTCCGACCGGGCAGGAAAGAGGTGGGGATAGCGTCCACCAGAGG
GGGGACAAGAAGGGGCGGAGAATGGGGGTCCCGTCGGACAGGCCGCCGGA
GGCGGCGGAAGAGGGGGGGGTGGCGCGAAAGAGCACGAGGAAGGTGAGCC
CCAAGAAGAGCGCGGGGGGAAGGGGGCCGCCGAGAGAGGTCGCCCTGTCG
GAGGACCAGCAGAGAGCCGTGGACCTCGTTGTCGGCGGCAGGAGCGTCTT
TTTCACCGCCAGCACCTTTCGGGGGTTATGCTTGGCGTATTAGCCAGCAC
CTTTCGGGGGTTATGCTTGGCGTATTAG
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