mRNA_E-siliculosus-1a_M_contig88.16813.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16813.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16813.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:264885..265465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size360
Model size581
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.0995967-CDS-E-siliculosus-1a_M_contig88:264884..2652441622936342.0995967-CDS-E-siliculosus-1a_M_contig88:264884..265244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 264885..265244 +
1696251034.1440976-CDS-E-siliculosus-1a_M_contig88:264884..2652441696251034.1440976-CDS-E-siliculosus-1a_M_contig88:264884..265244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 264885..265244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.1129463-UTR-E-siliculosus-1a_M_contig88:265244..2654651622936342.1129463-UTR-E-siliculosus-1a_M_contig88:265244..265465Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 265245..265465 +
1696251034.153935-UTR-E-siliculosus-1a_M_contig88:265244..2654651696251034.153935-UTR-E-siliculosus-1a_M_contig88:265244..265465Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 265245..265465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16813.1prot_E-siliculosus-1a_M_contig88.16813.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 264885..265244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16813.1

>prot_E-siliculosus-1a_M_contig88.16813.1 ID=prot_E-siliculosus-1a_M_contig88.16813.1|Name=mRNA_E-siliculosus-1a_M_contig88.16813.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=120bp
TGFHRFPGPFGLLAISLSRYLRLRLPCSSGARGHDQDGNARYAHKRTLCN
TCLSLDERTKKRSTSVFRVKSTGIRKPADGVGDNGEGWVIGSAISLTQQQ
QTRLTNNVTVVELYSLTRS*
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mRNA from alignment at E-siliculosus-1a_M_contig88:264885..265465+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16813.1 ID=mRNA_E-siliculosus-1a_M_contig88.16813.1|Name=mRNA_E-siliculosus-1a_M_contig88.16813.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=581bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:264885..265465+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGGGGTTTCACCGTTTTCCCGGCCCATTTGGATTGCTTGCCATCTCTCT
CTCTAGATATTTGCGCTTGCGCCTGCCCTGCTCGTCCGGCGCGCGCGGAC
ATGATCAAGATGGAAACGCGCGATACGCACACAAGCGAACGTTATGCAAC
ACGTGCCTCTCTTTGGATGAACGCACAAAAAAAAGAAGTACAAGCGTGTT
CCGGGTTAAAAGTACTGGCATCCGGAAACCTGCCGACGGGGTGGGTGATA
ATGGCGAAGGTTGGGTCATTGGAAGCGCGATCTCGCTGACACAACAGCAA
CAAACAAGGTTGACAAACAATGTTACGGTCGTGGAACTCTACTCGTTGAC
TCGTTCATGAAGAAGCACCAGAATTCAACCGAGGGGAATGCTTCTTTCGA
TTAAAGTCGAATCTAGAAGATAACAACGTGCCCAACAACCTGATCAAATC
CGAGAACAAATATACCGATGTACGTGCTTTAAGAACACACATTTTCGGAA
CGAACACGAGCCCTTGGCCCCAAACTCCCGCCGGCCTCCTACCCACCTGA
TGGAGTTAACTCACCCAAACGACGAGCCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:264885..265465+

>mRNA_E-siliculosus-1a_M_contig88.16813.1 ID=mRNA_E-siliculosus-1a_M_contig88.16813.1|Name=mRNA_E-siliculosus-1a_M_contig88.16813.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:264885..265465+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGGGGTTTCACCGTTTTCCCGGCCCATTTGGATTGCTTGCCATCTCTCT
CTCTAGATATTTGCGCTTGCGCCTGCCCTGCTCGTCCGGCGCGCGCGGAC
ATGATCAAGATGGAAACGCGCGATACGCACACAAGCGAACGTTATGCAAC
ACGTGCCTCTCTTTGGATGAACGCACAAAAAAAAGAAGTACAAGCGTGTT
CCGGGTTAAAAGTACTGGCATCCGGAAACCTGCCGACGGGGTGGGTGATA
ATGGCGAAGGTTGGGTCATTGGAAGCGCGATCTCGCTGACACAACAGCAA
CAAACAAGGTTGACAAACAATGTTACGGTCGTGGAACTCTACTCGTTGAC
TCGTTCATGAACGGGGTTTCACCGTTTTCCCGGCCCATTTGGATTGCTTG
CCATCTCTCTCTCTAGATATTTGCGCTTGCGCCTGCCCTGCTCGTCCGGC
GCGCGCGGACATGATCAAGATGGAAACGCGCGATACGCACACAAGCGAAC
GTTATGCAACACGTGCCTCTCTTTGGATGAACGCACAAAAAAAAGAAGTA
CAAGCGTGTTCCGGGTTAAAAGTACTGGCATCCGGAAACCTGCCGACGGG
GTGGGTGATAATGGCGAAGGTTGGGTCATTGGAAGCGCGATCTCGCTGAC
ACAACAGCAACAAACAAGGTTGACAAACAATGTTACGGTCGTGGAACTCT
ACTCGTTGACTCGTTCATGA
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