mRNA_E-siliculosus-1a_M_contig88.16809.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16809.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16809.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16809.1 vs. uniprot
Match: D7G267_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G267_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 5.030e-84
Identity = 147/211 (69.67%), Postives = 155/211 (73.46%), Query Frame = 2 
Query:  278 LSGKVLAVSLETRLHLHQMDAMKQEIYSFKAQVGGQEAYISELKRKEMTTAAALMKKKSECERAEERISK------------------------------------------IAQGERLMLSSAGEHDC-SNLP*PADLVQRIASIQDQLFVDWVAEALGDPCNTWLAVYEDIVKTLLLTFLECEVQRSAPLKFLENFGSMEAWNPSEHHK 781
            LSGK+LAVSLETRLHLHQMDAMKQ+IYSFKAQVGGQ+A IS+L+RKEMTTAAA  K+KSECERA+E +SK                                          I QGERLMLSSAGEHD  SNLP PADLVQRIASIQDQLFVDWVAEALGDPCNTWL  YEDIVK LLLTFLECEVQRSAPLKF E FGS EAWNPSEHHK
Sbjct:   95 LSGKILAVSLETRLHLHQMDAMKQDIYSFKAQVGGQDASISDLRRKEMTTAAAFTKQKSECERAKELVSKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQGERLMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPCNTWLVAYEDIVKALLLTFLECEVQRSAPLKFSEKFGSREAWNPSEHHK 305
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16809.1 vs. uniprot
Match: A0A6H5JMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.240e-28
Identity = 97/299 (32.44%), Postives = 127/299 (42.47%), Query Frame = 2 
Query:  260 GGETCQLSGKVLAVSLETRLHLHQMDAMKQEIYSFKAQVGGQEAYISELKRKEMTTAAALMKKKSECERAEERISKIAQGERLMLSSAGEHDC-SNLP*PADLVQRIASIQDQLFVDWVAEALGDPCNTWL--------------------------------------------------------------------------------------------------------------------------AVYEDIVKTLLLTFLECEVQRSAPLKFLENFGSMEAWNPSEHHKGS 787
            G +T  L G+ LAV LET L+LHQ+ A+++ I +   Q+  + A   +L  + M+ + AL K++S+ ++A +RI KIAQGERLML +AGEHD  SNLP PADLVQRI SIQ+Q+FVD +  ALG+  NTWL                                                                                                                          A Y DIV TLL+ FLECE+Q S  LKFL NFGS E W+P +H+K S
Sbjct:  167 GWKTTPLHGQELAVPLETLLYLHQVAALERRIDTLNTQLKEKYACNIKLMTEAMSMSTALEKEQSDLKKANDRIRKIAQGERLMLDAAGEHDYGSNLPSPADLVQRIESIQEQMFVDLIHHALGNDSNTWLVNQDAAEHIKIPREFVMQVLVETVHECYRRVXXXXXXRTEHIKRLKKEIVGAAQPGRLAHEVELFERNALHEGYKEIFVEVCPESDSDQTELARKLFHELAECISVSKVSPRVPTALLDATMATYTDIVTTLLMLFLECEIQPSTTLKFLGNFGSREPWDPDKHNKES 465
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G267_ECTSI5.030e-8469.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMH1_9PHAE1.240e-2832.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:230282..232330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size402
Model size915
Exons4
Ec32 orthologEc-16_002300.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16809.1prot_E-siliculosus-1a_M_contig88.16809.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 231161..232330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936347.0050683-UTR-E-siliculosus-1a_M_contig88:230281..2305471622936347.0050683-UTR-E-siliculosus-1a_M_contig88:230281..230547Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 230282..230547 -
1696251036.202442-UTR-E-siliculosus-1a_M_contig88:230281..2305471696251036.202442-UTR-E-siliculosus-1a_M_contig88:230281..230547Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 230282..230547 -
1622936347.0249772-UTR-E-siliculosus-1a_M_contig88:230913..2311601622936347.0249772-UTR-E-siliculosus-1a_M_contig88:230913..231160Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 230914..231160 -
1696251036.228895-UTR-E-siliculosus-1a_M_contig88:230913..2311601696251036.228895-UTR-E-siliculosus-1a_M_contig88:230913..231160Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 230914..231160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936347.0454767-CDS-E-siliculosus-1a_M_contig88:231160..2312471622936347.0454767-CDS-E-siliculosus-1a_M_contig88:231160..231247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 231161..231247 -
1696251036.2422-CDS-E-siliculosus-1a_M_contig88:231160..2312471696251036.2422-CDS-E-siliculosus-1a_M_contig88:231160..231247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 231161..231247 -
1622936347.0605774-CDS-E-siliculosus-1a_M_contig88:231406..2316171622936347.0605774-CDS-E-siliculosus-1a_M_contig88:231406..231617Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 231407..231617 -
1696251036.2533503-CDS-E-siliculosus-1a_M_contig88:231406..2316171696251036.2533503-CDS-E-siliculosus-1a_M_contig88:231406..231617Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 231407..231617 -
1622936347.0813522-CDS-E-siliculosus-1a_M_contig88:232226..2323301622936347.0813522-CDS-E-siliculosus-1a_M_contig88:232226..232330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 232227..232330 -
1696251036.2672348-CDS-E-siliculosus-1a_M_contig88:232226..2323301696251036.2672348-CDS-E-siliculosus-1a_M_contig88:232226..232330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 232227..232330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16809.1

>prot_E-siliculosus-1a_M_contig88.16809.1 ID=prot_E-siliculosus-1a_M_contig88.16809.1|Name=mRNA_E-siliculosus-1a_M_contig88.16809.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=134bp
MDKPPSAYGQYFTTQADGQCWKSPLYSLVAPLSSWWVGPSAFDGAGQSYP
KLPEGMTVLVRSPKDLAATLMNGPTADGTYQVDFPTWGRDLPTERKGPRS
LPRNPVTPAPDGRDEARNILVQSPSGGTRSLHQ*
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mRNA from alignment at E-siliculosus-1a_M_contig88:230282..232330-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16809.1 ID=mRNA_E-siliculosus-1a_M_contig88.16809.1|Name=mRNA_E-siliculosus-1a_M_contig88.16809.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:230282..232330- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACAAGCCACCATCCGCGTACGGTCAGTACTTCACCACCCAAGCAGA
CGGGCAGTGCTGGAAGTCACCATTGTACTCTCTCGTGGCGCCGTTGTCAA
GCTGGTGAGAATTCTTCCGAACATTGCGCTCATCACCCAAGCCGTTGTCT
CCTGTTCGAGCTTCAATGTCCCTGTCCTAACTCGTGTGCATGCAGAAAGA
CCGGTTGGTCGTCACAGTAGAACGCGCTGTACATGTGCCGAGTCTGCGAC
GTCGAATGTATCCGTTGCCAACCCTGAACGAATCCATGCTAGTCTGCAGT
GGCCAAGCCATTGCTGAAGTGCTAATCAAGCTGCAGAGCGACGCAACTTG
CTGACCCGAACCTCCAGTTTGATACAGCGCCGCCGGGGCCAATGAGCTGA
GTCGGCACAAAGTGTTTGATGTTGCAACACGGTTTTCCCAATCTCCTAGC
CAACATCGCCTCATTGGCGGACGTCAGACCCCCTCTGCCTGTTTCTTGTT
TGAAACAAGGCGCTGTGGACATGTTGCGGACCTGAACGGTACATAGCCTT
GAGAACGCGCCCACAACGTGTGCCCAGCCACCACCTTGCCCGATGGAGAC
GTTCACCATGTGGTGCATGGGTTTCTGTTTTATATTCTTCGCAGAACCGC
TTGGTTTCGACTTGTTGCACTGCTATCATCATCGTTCCAATTTTGTATTC
AACCATGTGTCAGGTGGGTTGGACCCTCCGCCTTCGATGGGGCGGGGCAA
TCGTACCCCAAGTTGCCAGAGGGTATGACGGTGCTAGTACGATCTCCCAA
AGATTTGGCGGCCACTCTCATGAACGGCCCTACTGCAGATGGCACCTACC
AGGTTGACTTTCCGACTTGGGGGCGAGACTTGCCAACTGAGCGGAAAGGT
CCTCGCAGTCTCCCTCGAAACCCGGTAAGCGCGTGACATATTCTGGGTTT
TGCGAAATATGAAGTCAAGGACAGCGTTCAGTGTGAATATTGAAGCCCGA
AGCTCGTATCAATGAGTCGTGGCGGGTGGCTTACCTATTCCCCACGACAT
CCCTCGACCACACACTCTTGTGCTGCGTCACAGGTTACACCTGCACCAGA
TGGACGCGATGAAGCAAGAAATATACTCGTTCAAAGCCCAAGTGGGGGGA
CAAGAAGCTTACATCAGTGAGCTCAAGAGGAAAGAGATGACCACGGCCGC
CGCCCTCATGAAAAAGAAATCTGAATGTGAAAGGGCCGAAGAGCGCATCA
GCAAGATTGCCCAGGGTGAGAGGCTCATGCTCAGCTCCGCCGGCGAGCAT
GACTGCTCCAACCTTCCATAACCGGCTGACCTTGTTCAGCGAATCGCGAG
TATCCAAGATCAGCTCTTCGTGGACTGGGTCGCGGAAGCCCTGGGAGATC
CCTGCAACACGTGGTTGGTAAGCCAGGATGCGATCGAGGCTATCGAAAAC
CCCAGGAACATGGTGTTGCAAGTGCTTGTTGAGACAGCGCGTGAGTGCTT
TCGTCGCGTCCACGAATGTATTTCCAGGCGGATGGATCTGATGACGAGTA
TCATGGGGGAGTTCGTGGGGGCGGCCAACGATAGCTGCCTTGCTGAGGAA
GTGGCACATTTCAAGCGCAGCGCCTTCCACAAGGGATACAAAGAGATGTT
CGCTGAGGTGTGCCCGGCATGTCCCATCGACCAGAGCGAGCTGGCTCGAG
ATGTCTTTCACGGGCTTGCCGCGTGCGTGTCCGTTTCGAAGATTTCGCGG
AATGGTCCCACCGCACTGTTCGGCACGACCCAGGCGGTCTACGAGGATAT
CGTCAAGACCCTTCTCTTGACGTTCTTGGAGTGCGAAGTTCAACGGTCGG
CCCCACTGAAGTTCTTGGAGAACTTTGGGAGCATGGAGGCTTGGAACCCT
AGCGAGCACCACAAGGGGTCTAAGTCGTGGAGGGGAACACCCAGGTGCAG
GTTGTCATCCCTCGCCTTTTCTGGGAGAAGAAGATGGCTGACGACGACAG
TGTTTCAAGGTTTTTTGAAACCCAGGCTTCCTTTGTCATTCCCAGTGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:230282..232330-

>mRNA_E-siliculosus-1a_M_contig88.16809.1 ID=mRNA_E-siliculosus-1a_M_contig88.16809.1|Name=mRNA_E-siliculosus-1a_M_contig88.16809.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=804bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:230282..232330- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACAAGCCACCATCCGCGTACGGTCAGTACTTCACCACCCAAGCAGA
CGGGCAGTGCTGGAAGTCACCATTGTACTCTCTCGTGGCGCCGTTGTCAA
GCTGATGGACAAGCCACCATCCGCGTACGGTCAGTACTTCACCACCCAAG
CAGACGGGCAGTGCTGGAAGTCACCATTGTACTCTCTCGTGGCGCCGTTG
TCAAGCTGGTGGGTTGGACCCTCCGCCTTCGATGGGGCGGGGCAATCGTA
CCCCAAGTTGCCAGAGGGTATGACGGTGCTAGTACGATCTCCCAAAGATT
TGGCGGCCACTCTCATGAACGGCCCTACTGCAGATGGCACCTACCAGGTT
GACTTTCCGACTTGGGGGCGAGACTTGCCAACTGAGCGGAAAGGTCCTCG
CAGTCTCCCTCGAAACCCGGTGGGTTGGACCCTCCGCCTTCGATGGGGCG
GGGCAATCGTACCCCAAGTTGCCAGAGGGTATGACGGTGCTAGTACGATC
TCCCAAAGATTTGGCGGCCACTCTCATGAACGGCCCTACTGCAGATGGCA
CCTACCAGGTTGACTTTCCGACTTGGGGGCGAGACTTGCCAACTGAGCGG
AAAGGTCCTCGCAGTCTCCCTCGAAACCCGGTTACACCTGCACCAGATGG
ACGCGATGAAGCAAGAAATATACTCGTTCAAAGCCCAAGTGGGGGGACAA
GAAGCTTACATCAGTGAGTTACACCTGCACCAGATGGACGCGATGAAGCA
AGAAATATACTCGTTCAAAGCCCAAGTGGGGGGACAAGAAGCTTACATCA
GTGA
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