mRNA_E-siliculosus-1a_M_contig88.16806.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16806.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16806.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:195171..196853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size279
Model size279
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936346.6291583-CDS-E-siliculosus-1a_M_contig88:195170..1953611622936346.6291583-CDS-E-siliculosus-1a_M_contig88:195170..195361Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 195171..195361 +
1696251036.0315783-CDS-E-siliculosus-1a_M_contig88:195170..1953611696251036.0315783-CDS-E-siliculosus-1a_M_contig88:195170..195361Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 195171..195361 +
1622936346.6470325-CDS-E-siliculosus-1a_M_contig88:196765..1968531622936346.6470325-CDS-E-siliculosus-1a_M_contig88:196765..196853Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 196766..196853 +
1696251036.0470653-CDS-E-siliculosus-1a_M_contig88:196765..1968531696251036.0470653-CDS-E-siliculosus-1a_M_contig88:196765..196853Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 196766..196853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16806.1prot_E-siliculosus-1a_M_contig88.16806.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 195171..196853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16806.1

>prot_E-siliculosus-1a_M_contig88.16806.1 ID=prot_E-siliculosus-1a_M_contig88.16806.1|Name=mRNA_E-siliculosus-1a_M_contig88.16806.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=93bp
PPYTCLTTFPKPINWQVGDVIIASKKRSSGTKWHYSRRRRLICLDCDEGR
QFWSRRGRKGCCTGRWVGKEQPEGNGARAEPYIRDLKGDGTG*
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mRNA from alignment at E-siliculosus-1a_M_contig88:195171..196853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16806.1 ID=mRNA_E-siliculosus-1a_M_contig88.16806.1|Name=mRNA_E-siliculosus-1a_M_contig88.16806.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:195171..196853+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGCCGTATACATGTCTGACGACGTTTCCCAAGCCGATCAACTGGCAAGT
TGGTGATGTGATCATAGCCTCCAAGAAGAGAAGCTCAGGCACAAAATGGC
ATTATTCGCGGCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGG
CAGTTTTGGAGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGGTGAGAACC
TAGACAGCCTGGGGGAGGCCTGCTGCATACTACGTAGTTTGACACATATG
CTCGCCGCAGGCAGTCACGCGCACAGATAAAACACAGCGTAGATATCGCT
CACGTATTTTCGAATACGGGGGATTTTTGAAGTGTTGCAAGAACAATCCA
GGAAAAAAGAGCTGGCTACTGGATACGGTTGTTTAGTCGTACCACGCGAC
TGCTGTGTCTTGTGCCGTGTTGGCTACGGTTGAACGTTGCATGCTCTTGA
ACCATGGACATGGTTTACAGCAGTAATAGCAAAGCATTTCGAAAAGGCTC
GGGAAGGTGAACGCTCTCATTTCAACCAACTGCCAAGAGCGACTTTGTGG
AGGGCACATGCATATCATCATGTACCGTAAGTGACACAAGATACCACACG
CCCTTGACCGATTTTCAAAGCTCGATTGCTCCACAGTTGAAAGAGTGGTG
GCGCCGAAATAGCGGCGTCCCAGCCGTCTCGTCGAGATCTTTCCGACAAC
GTATCGATTGAATTTGGCACCCACGTCTTTCGTGCAGTAGTCGATCGTTG
AAAATCGGTCCAGGGGGTGTGGTATCTTATGTCACCTACGGTACATCACG
TCAGCTAAGCGGTAGCACCACTTATAATGTGTTTACCGTAGGTGATACAA
AACACCACACCCCCTGGACCGATTTTCAAAGCTCGATTGCTCCGCATCAA
GTAGAAAGAGTGCTGATGCCGAAAATGGCGGCGTTGGAATCGAAGCACGC
TACAGCAGCGCATCACTGCTGCAACCCGTGTGCCCTCGTGGACTACGGTA
CCCCGTCTACCTTGATGCCTGAGAAGCCAATGGGATCAATCCTGGGAGAT
CGGAAGACCTCGGGAAGATCGAATGGCAACTGTTGAGAGAGGTTTCAGAG
GTTCCATGTTGAAAGGGTGAAAGTGCTGTCCATCACAGACAGTGGGATGC
CGAGGCGCGCAGCCTGTTGTCGGGGTGAGTAATTGTAGTGTTCGCAAGCC
TGTTGCTTGACCTCGGCGTTGTTTTTTTCCTTCATCTCTCAATTTCTCTA
ACGCGCGCGGAACTATTGATTTCGCTGGAGCTCCAGCGGGCATATCCAGA
CACGACGGAGGGGGCTTGTCCAGAAATCGACGCGACGAATGAATGTCAAC
CAAACTGCTGTACAATTCCGTTGCCTGTTGGAACTTGCGTCAACTGTTGC
ATCCAATTTCAGCGGAGCATGTCCTTCACGGGGACTGCGCAAGACGACAT
TTATTGGGGGAAGGAGACATTCGCTTGCTTCTTGTGCCCGATGCTGATCG
TTCACGAGGCCCCCGATTGCGTATGCTCGACCAGAAGGGAGGAGGCAAGT
CCTTGACGGAAAGTCCGGTGTCGTCTACCCCCACGGTGACGGCAGCAGGT
GGGTCGGCAAAGAGCAGCCGGAGGGCAATGGCGCAAGAGCTGAGCCGTAC
ATTCGCGACTTGAAGGGAGACGGGACGGGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:195171..196853+

>mRNA_E-siliculosus-1a_M_contig88.16806.1 ID=mRNA_E-siliculosus-1a_M_contig88.16806.1|Name=mRNA_E-siliculosus-1a_M_contig88.16806.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=558bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:195171..196853+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGCCGTATACATGTCTGACGACGTTTCCCAAGCCGATCAACTGGCAAGT
TGGTGATGTGATCATAGCCTCCAAGAAGAGAAGCTCAGGCACAAAATGGC
ATTATTCGCGGCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGG
CAGTTTTGGAGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGCCGCCGTAT
ACATGTCTGACGACGTTTCCCAAGCCGATCAACTGGCAAGTTGGTGATGT
GATCATAGCCTCCAAGAAGAGAAGCTCAGGCACAAAATGGCATTATTCGC
GGCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGGCAGTTTTGG
AGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGCAGGTGGGTCGGCAAAGA
GCAGCCGGAGGGCAATGGCGCAAGAGCTGAGCCGTACATTCGCGACTTGA
AGGGAGACGGGACGGGTTAACAGGTGGGTCGGCAAAGAGCAGCCGGAGGG
CAATGGCGCAAGAGCTGAGCCGTACATTCGCGACTTGAAGGGAGACGGGA
CGGGTTAA
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