mRNA_E-siliculosus-1a_M_contig88.16805.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16805.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16805.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: D7G270_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G270_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.780e-166
Identity = 240/254 (94.49%), Postives = 246/254 (96.85%), Query Frame = 3 
Query:   60 MALRVVVGLILVLFVTEEISAFVTVPTRTVRRGQHPNHAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMEKKGDAAAEESYGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTR 821
            MALRVVVGL+LV+FVTEEISAFVTVPTRT RRGQ+PNHAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGM+K+GDAAAEES GSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKV YEEMIFFDDWDQNCKDVGKLGVTCVECRR +S   W R
Sbjct:    1 MALRVVVGLLLVVFVTEEISAFVTVPTRTARRGQYPNHAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVSYEEMIFFDDWDQNCKDVGKLGVTCVECRRVVST-FWRR 253
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A6H5JAJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ8_9PHAE)

HSP 1 Score: 472 bits (1215), Expect = 5.090e-166
Identity = 243/268 (90.67%), Postives = 252/268 (94.03%), Query Frame = 3 
Query:   60 MALRVVVGLILVLFVTEEISAFVTVPTRTVRRGQHPNHAGK-HPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMEKKGDAAAEESYGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAKESLR 860
            MALRV+VG++LV+FVTEE SAFVTVPTR         HAGK HPTTNGLRMMMGKKGGA+SKKKRGRGGI DVGVE+EA+GM+KKG AAAEES G VPRLVVMDLDYTLWKPELYQMRGAPFTK+KDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGL REVWTRGLAKFAAAKESLR
Sbjct:    1 MALRVIVGILLVVFVTEEFSAFVTVPTRIT-------HAGKQHPTTNGLRMMMGKKGGAQSKKKRGRGGIEDVGVENEAIGMDKKGGAAAEESDGIVPRLVVMDLDYTLWKPELYQMRGAPFTKEKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLIREVWTRGLAKFAAAKESLR 261
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A7S2V3W0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3W0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.940e-50
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 3 
Query:  321 AAEESYGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAKESLRP 863
            A+ ++  +VP+LVV DLDYT+W PE+YQ+ GAPF +K+ GKV DRSG  + LF  VR  L  +     F  TK+A ASRT +  WA +VM L+ ++  L M  VF F EIY G+K  HF  + ++S++ +++M+FFDDW+ NC+DV +LGVT +EC +G++ +V+   L KF AA  S  P
Sbjct:   57 ASMDAETAVPKLVVFDLDYTMWNPEMYQLYGAPF-EKRGGKVYDRSGTEVKLFRDVRSILRRIRTSEEFSSTKIASASRTEYPEWAYEVMSLMPVDDNLTMADVFEFNEIYPGTKTAHFRRLHQDSQIAFKDMVFFDDWNGNCRDVARLGVTTMECPQGMTMKVFDACLQKFQAAVNSKVP 236
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A836CCC3_9STRA (Acid phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.240e-48
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 3 
Query:  345 VPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAKE 851
            VPRLVV DLD T W PE++Q++GAPF +   G+V DR G  + L P VR  L E++       T++A ASRT+   W+RQVM L  +  GLLM  +F F EI  G K  HF E+   SKVPY+EM+FFDDW++N KDV  LGVTC+ C  GL++++W +GL K+A+ K+
Sbjct:  130 VPRLVVFDLDKTCWLPEMFQLKGAPF-RVAAGRVLDREGTEVALRPDVRNVLEELYTHPGLSSTRIACASRTNRGNWSRQVMELFVVFDGLLMSELFDFVEIQPGDKTAHFDELTTLSKVPYDEMLFFDDWERNIKDVSPLGVTCIHCPEGLTKQLWRQGLQKYASRKQ 297
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A6S9KH66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KH66_HETAK)

HSP 1 Score: 167 bits (422), Expect = 3.090e-47
Identity = 78/166 (46.99%), Postives = 110/166 (66.27%), Query Frame = 3 
Query:  342 SVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFA 839
            +VP+L+V DLD+T+W PE+YQ+ GAPF+ + +GKV DR    +DLFP VR  L  +H    F +TK+  ASRT +  WA + M LI++  G+ MR  F+F EIY G+K +HF +++++S+V YE+M+FFDD   NC+DV  LGVT   C  GLS   +   L  FA
Sbjct:    2 AVPKLIVFDLDFTMWDPEMYQLDGAPFSYR-NGKVYDRRNTEVDLFPDVRNILQRIHFSEEFAETKIGSASRTEYPEWAYECMSLIDVCDGMKMREFFTFNEIYPGTKTKHFRKLQKDSQVDYEDMLFFDDCSWNCRDVSALGVTAFNCPNGLSEREFNEALDIFA 166
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A5J4YXB8_PORPP (Magnesium-dependent phosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXB8_PORPP)

HSP 1 Score: 160 bits (404), Expect = 1.670e-43
Identity = 80/181 (44.20%), Postives = 112/181 (61.88%), Query Frame = 3 
Query:  309 KGDAAAEESYGSVPRLVVMDLDYTLWKPELYQM--RGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAA 845
            KG  AA  +  +VPRL+V DLD TLW+PE+Y++   GAPF   KDG V DRSG  + L    R  LLE+    R++DT++A+ASRT    WA + M  I +  G+ M+S     EIY G+KV HF  +   + +PY++MIF+D+   NC DVG LGV C+   RG++  +W + L +FA A
Sbjct:   70 KGAMAAGATRVTVPRLLVFDLDGTLWRPEMYELWGGGAPFKPNKDGNVVDRSGTEVRLLGNSRSLLLELRTDERWKDTQVAVASRTDEPTWAEECMQKIMIADGMNMKSTIDIEEIYKGNKVHHFRALHEKTGIPYDQMIFYDNETANCHDVGTLGVLCIFTPRGMTDGIWQQSLEQFAKA 250
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A8J7X6_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J7X6_CHLRE)

HSP 1 Score: 144 bits (364), Expect = 1.670e-38
Identity = 73/175 (41.71%), Postives = 106/175 (60.57%), Query Frame = 3 
Query:  345 VPRLVVMDLDYTLWKPELYQMRG-APFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEP----GLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAKES 854
            +P+L+  DLD TLW PE+Y + G APF + K G V D+  E I+L     E L E+    +++DT++A  SRT +  WA   +    + P    G  +  + ++ EIY GSK+ HF +I ++S VPYE+M+FFD+   NC +  +LG+ CV   RGL+RE W RGLA FA A+ S
Sbjct:    4 IPKLIAFDLDGTLWWPEMYMLDGGAPFRRDKSGAVFDKRNERIELMGASEEVLRELATDPKWKDTEIAYVSRTEYPEWAIPCLKTFLVTPEGQGGRNLLDISAYQEIYPGSKITHFKKIHKDSAVPYEDMLFFDNEKWNCTECSRLGIVCVYTPRGLTREAWDRGLADFATAQAS 178
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A7S2PH52_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH52_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.900e-37
Identity = 68/166 (40.96%), Postives = 106/166 (63.86%), Query Frame = 3 
Query:  348 PRLVVMDLDYTLWKPELYQMRGAPFTK-KKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEP-GLLMRSVFSFTE-IYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKF 836
            P+LVV DLD+T+W PE+Y++ GAPF K  + G+V DR  E + +F  + E    +H    F +TK+A+AS T++  WAR+ M L+ ++   + + +V  + + IY  +K  HF E+R  S + +++M+FFD+   N ++VG+LGVTCV C  G+S E W RGL  F
Sbjct:    7 PKLVVFDLDFTVWYPEMYELEGAPFKKCSRTGRVTDRDNEEVQIFDDMHEIFKALHTSDEFENTKVAVASSTTYPEWARECMRLLHVQDIDVALETVIHYRQAIYPRNKKVHFNELREASGIDFKDMLFFDNERYNIREVGELGVTCVYCPDGMSMEHWERGLDAF 172
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A2P4X9J2_9STRA (Magnesium-dependent phosphatase-1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9J2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.950e-37
Identity = 79/188 (42.02%), Postives = 108/188 (57.45%), Query Frame = 3 
Query:  315 DAAAEESYGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKD-GKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIEL--------EPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAKE 851
            D+ A   +  +PRLVV DLDYTLW P +  + G PFTK  D G V DR GE + L P V+  L  +    +F  TK+AIASRT   + A++ MGLI++        E    +  + SF EIY   KV HF +  +NS V YE+M+FFDD  +N +DV +LGVT   CR G++   W  G+  +  AK+
Sbjct:    4 DSRASPPWTHIPRLVVFDLDYTLWCPYIDVLNGGPFTKTNDPGIVLDRYGEELSLLPEVQAVLNVIETDPQFEGTKVAIASRTGEIQAAKECMGLIQVSIKRDGGTEEMKTLEEIASFVEIYPTGKVAHFNKFFQNSGVAYEDMLFFDDEYRNIQDVSRLGVTSQYCRDGVTWSSWLEGMEAYQLAKQ 191
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Match: A0A225UQY6_9STRA (Magnesium-dependent phosphatase-1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQY6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.210e-37
Identity = 78/186 (41.94%), Postives = 108/186 (58.06%), Query Frame = 3 
Query:  315 DAAAEESYGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKD-GKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIEL-------EPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAAAK 848
            D  A + +  VPRLVV DLDYTLW+P +  + G PF K  + G V DR  E + L P V++ L  +    +F  TK+AIASRT   + A++ MGLIE+       E    +  + SF EIY   KV HF +  +NS V YE+M+FFDD  +N +DV +LGVTC  C  G++ + W  G+  +  AK
Sbjct:    3 DTRASQQWPHVPRLVVFDLDYTLWQPYIDVLNGGPFKKTHNPGVVLDRYDEELSLLPDVQKVLNVIETDPQFEGTKVAIASRTGEIQAAKECMGLIEVSIKKGEGEEMKTLEDIASFVEIYPTGKVAHFKKFIQNSDVQYEDMLFFDDEYRNIQDVSRLGVTCQFCHDGVTWKSWMEGMKAYQEAK 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G270_ECTSI1.780e-16694.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAJ8_9PHAE5.090e-16690.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V3W0_9STRA2.940e-5046.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CCC3_9STRA1.240e-4849.70Acid phosphatase-domain-containing protein n=1 Tax... [more]
A0A6S9KH66_HETAK3.090e-4746.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YXB8_PORPP1.670e-4344.20Magnesium-dependent phosphatase 1 n=1 Tax=Porphyri... [more]
A8J7X6_CHLRE1.670e-3841.71Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A7S2PH52_9STRA4.900e-3740.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2P4X9J2_9STRA6.950e-3742.02Magnesium-dependent phosphatase-1 n=1 Tax=Phytopht... [more]
A0A225UQY6_9STRA9.210e-3741.94Magnesium-dependent phosphatase-1 n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:187544..192543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size807
Model size1056
Exons5
Ec32 orthologEc-16_002270.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko01009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.1.3.48
EggNOG OGsKOG4549@1,KOG4549@2759
EggNOG free text desc.fructosamine metabolic process
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0030946,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
KEGG koko:K17619
Seed eggNOG ortholog2880.D7G270
Seed ortholog evalue1.4e-131
Seed ortholog score475.7
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936346.432856-UTR-E-siliculosus-1a_M_contig88:187543..1876021622936346.432856-UTR-E-siliculosus-1a_M_contig88:187543..187602Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 187544..187602 +
1696251035.9543-UTR-E-siliculosus-1a_M_contig88:187543..1876021696251035.9543-UTR-E-siliculosus-1a_M_contig88:187543..187602Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 187544..187602 +
1622936346.5587542-UTR-E-siliculosus-1a_M_contig88:192353..1925431622936346.5587542-UTR-E-siliculosus-1a_M_contig88:192353..192543Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 192354..192543 +
1696251036.0208285-UTR-E-siliculosus-1a_M_contig88:192353..1925431696251036.0208285-UTR-E-siliculosus-1a_M_contig88:192353..192543Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 192354..192543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936346.4473076-CDS-E-siliculosus-1a_M_contig88:187602..1879281622936346.4473076-CDS-E-siliculosus-1a_M_contig88:187602..187928Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 187603..187928 +
1696251035.9664311-CDS-E-siliculosus-1a_M_contig88:187602..1879281696251035.9664311-CDS-E-siliculosus-1a_M_contig88:187602..187928Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 187603..187928 +
1622936346.479555-CDS-E-siliculosus-1a_M_contig88:188813..1889991622936346.479555-CDS-E-siliculosus-1a_M_contig88:188813..188999Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 188814..188999 +
1696251035.9762087-CDS-E-siliculosus-1a_M_contig88:188813..1889991696251035.9762087-CDS-E-siliculosus-1a_M_contig88:188813..188999Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 188814..188999 +
1622936346.499262-CDS-E-siliculosus-1a_M_contig88:190664..1907581622936346.499262-CDS-E-siliculosus-1a_M_contig88:190664..190758Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 190665..190758 +
1696251035.987715-CDS-E-siliculosus-1a_M_contig88:190664..1907581696251035.987715-CDS-E-siliculosus-1a_M_contig88:190664..190758Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 190665..190758 +
1622936346.5199645-CDS-E-siliculosus-1a_M_contig88:191104..1912331622936346.5199645-CDS-E-siliculosus-1a_M_contig88:191104..191233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 191105..191233 +
1696251035.9976256-CDS-E-siliculosus-1a_M_contig88:191104..1912331696251035.9976256-CDS-E-siliculosus-1a_M_contig88:191104..191233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 191105..191233 +
1622936346.5372257-CDS-E-siliculosus-1a_M_contig88:192281..1923531622936346.5372257-CDS-E-siliculosus-1a_M_contig88:192281..192353Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 192282..192353 +
1696251036.0081036-CDS-E-siliculosus-1a_M_contig88:192281..1923531696251036.0081036-CDS-E-siliculosus-1a_M_contig88:192281..192353Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 192282..192353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16805.1prot_E-siliculosus-1a_M_contig88.16805.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 187603..192353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16805.1

>prot_E-siliculosus-1a_M_contig88.16805.1 ID=prot_E-siliculosus-1a_M_contig88.16805.1|Name=mRNA_E-siliculosus-1a_M_contig88.16805.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=269bp
MALRVVVGLILVLFVTEEISAFVTVPTRTVRRGQHPNHAGKHPTTNGLRM
MMGKKGGARSKKKRGRGGIGDVGVEDEAVGMEKKGDAAAEESYGSVPRLV
VMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEV
HRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSG
SKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSRE
VWTRGLAKFAAAKESLRP*
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mRNA from alignment at E-siliculosus-1a_M_contig88:187544..192543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16805.1 ID=mRNA_E-siliculosus-1a_M_contig88.16805.1|Name=mRNA_E-siliculosus-1a_M_contig88.16805.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5000bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:187544..192543+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCAGGTACAGCAACCGCCGTACGGCATTGAGTGAGGAGTGAGGAAGGCG
TGGAGGCACATGGCTCTGAGAGTGGTTGTGGGGCTAATTTTGGTGTTATT
CGTTACGGAAGAAATCAGCGCGTTCGTTACCGTTCCCACGAGAACAGTTC
GAAGAGGGCAGCATCCGAATCACGCAGGAAAACACCCTACGACGAACGGG
CTGCGCATGATGATGGGCAAGAAGGGAGGGGCTCGTTCGAAGAAGAAGCG
AGGGCGAGGCGGGATCGGAGACGTCGGCGTGGAGGACGAGGCTGTTGGTA
TGGAGAAGAAGGGGGACGCTGCGGCAGAAGAGAGTTATGGGAGTGTGCCT
CGCCTGGTTGTGATGGACCTTGACTACACGTTGTGGTGAGACAGAGCTTG
TATTCGCACACCTTGCCGACCTTGCTGACGTATGTGCGCGCTGAAGCAGT
CACCAATTGGCTTCGGCCTCGGTGCCACACCCTAGCGACGACGGTGCCAT
GGTCAAAAACGCTGCTGGGTGGCACATACCCTTCACCGACAGCAGCAGCA
TGGATAGCGAGCCTTGACCTCGCTCCACACTCCAGTTTCCTGGAAACCGT
TACGCGCTACAAAACTGCCGCGTTGCACCCAACGGGAAGATCCTGATGCC
GGGCTGCTGGTACATACCTCAAATGCAAATAAACGACAGCAGCAGTTCCT
TGTGCCTGAAGACAGCTGTTATACTGCAGTAGACGGAACATGCTTCATTG
AGTGGGTGTTACGCGTAGTCCACGTTCGACCGGCAGTCCCTGCGTTTGGA
AGTATTCGGTCAGTAGATTGGCAACAGCCGTTTCGCTTTTTTTCAGCCGG
TCGCCTTCACGTACACATACCAAGGAAGATGATGAATACTGGATTGGTGA
ACATTGTTTTCGCCGTTTGCACGCCGTTCAGTACAGTATCACCCCCTGTC
CATGAACAACTACATGCAGTTTGTGATGGGCATAGAAGCCTGAGCTGAAC
GCGTAACGAAGGAAGGGGACGATAATTTTATATAATCGGTACAGATATGA
AGCGAGCAAAGGAAGCCTCACGTTCATCACCTGAGTTGCGCTTTCGCCAC
CGCGGCCAAGCGTCGTCCTCTTCCATTCACTAGGGCGTGCGACCCGGGCT
TCCTGTAGCGTCCGGCTTCATTGGCGACGAGGATGTATGAGACACCACCA
CATTGATGCATATGCATATCGCCGACGAGGATAACAACAACAACAGTGAA
CCCACGACCACTGACTGCAGGAAGCCGGAGCTGTACCAGATGAGGGGGGC
GCCCTTCACCAAGAAGAAGGACGGCAAGGTAAGGGATCGCTCGGGCGAGG
TGATCGACCTCTTCCCCGGCGTTCGAGAAGCGCTGCTGGAGGTGCACAGG
GGGCATCGCTTCAGGGACACCAAGCTGGCCATCGCTTCGAGGACGTCTCA
CGAAAGGTGATTGAAACGATTTGGAATACTGTGCTGTTGTTCTGTTCTAC
GCGTATGCGAGCGTGGGGCATTGTACAGTCGCGACTGCGGCTGTGGAGAG
AGTAGTGTTGATCACCGGTGACCTTCGTTAATGAGGCATACCTCTATTGC
TGTAAGAGAGAGAGGAGTAGCTCCACTCAATCTGCATGAGATACTCCTGT
ATTGTATCGACTCCCCAGGTGAGAACGGGTTTGTCCTTCAAAGCCGAACA
ACCCCATACAGAGACCTTTTTTTTTGTGGGGGCCCCCAGAACGCGTGGAG
GCTGAAAATGTCGTGTTGGTATCCATACATGTGCCTTTTTCGTTTGGCGT
TTTGGGGTTGGCACGATCGATGTTGCTGTTGCTGTAGGCGATGCCATACC
GCCCGCACCGCCGCGATCAAATTCTGCTCATTGATACGCTGGTGTTACCC
AACAAGAATCAAGAATCGTTGCGGCCATCGGCCTAGCAACTGATCCCGCT
TGGATAGAAAACACTTGGCCTGGTATGTTTGCAACGAAATGCTTCGCGCA
CGTGGACAAGTGAATACAACAATGAAGGATTCGTTCATCGCATAGCAAGA
CCGGCGCAAGCCCAAAGGTGGATACACCCCTGGTCTCGTAGGATCGACGT
TGTGAGTTTCTTGTCTTGATTGGTAATGTTTAACTTTGTCGTTGGTTTCG
TCCTATTCTAGTTGGTTGACCTCGCGCGTGGAGTGGGGGCGGTGGGCTTT
TGTGAAAAAAAGCAATGAGGAAAGACTACGTGGCAACCAAACCCATCTGC
GACACTACCGGAATCTGTGATGCACGTTTTCCTCACTTCCATCGACCCGG
ATCGGCTGGCTTGGACGTCCTTTAGCAACGCGATACCTCGGGCATGCAGT
ACTCTTCACAGATTATCCTAGCAACCTCGTTCGCTATTGTTTCCAAGTCA
TGCCAAGGATGTATGTAGCTTCTTCGGGGTACGTTGCATTTGTAGGGCAC
GCCTGACTGGGTTGTTTTTGACTCGGATTGTGTCGGGCTTATTTCGGCCA
CACCCTGCTTTGGTTTTCTCGCAAATAGTGGAGCTCTAGAACAGTTCTCC
TACAAGCTGTGCCCCGTTTCAGGTTTTGGCTTGCGACCACGGAAATAACT
TGTTGGCCGCGGACAAGAGATGCTAGATCGAGGTCAAAACCAGCCGTCAA
TGCGAACACAACACCCACAAATAACAATACCAACAGCTGCCAGAACCCGC
TTTTGTTCGGATACAGGGAATGCTGGGCTTCACACGGGTAATGCGTGCTG
TGTGTACGAGAGTAGCAGAGGCGACGTGGTCGTTGCTTCGAGGCAGTAGC
TTTCGAGCGGGAAGAGGGGCTTGGTCTCGTCCAAACTGTTCGCGAGGCAC
GTTGGTCTGCGACGACCATCACCGAAACCAGCCCCAAGTCGTGGCTTCTG
TCGATGGCTTCATCCATACCTTGATCTTGGTGTCGTTTTGTCTCGCTTTG
CGTGTTCGCATCTTCTGTGTCGATGATGCGCAAAACCAACACAACAGCCA
CCAGAAAAGGAACATGAAGCATACAATGCTGAAGCAGGTCGTAACTTGGA
GAAGTCACCCGCTTCTCGCCTTTTTTTTGTTTGTCTCCGGATTCAATGTT
CGTGTGTTTCTCTGTTTACAGATGGGCGCGGCAAGTTATGGGTCTCATCG
AGCTTGAGCCCGGCCTCCTGATGCGCAGCGTTTTTTCGTTCACCGAAATC
TACTCGGGCTCTAAGGTGTGACGGCTGACGGGACTACAACGTACGGCGAG
CGAGACTCTATACAACATTAAGCACCTTGGTTTCAGAGAGCACTTGTTTG
AGATGAAATTGTTGATCATGGGGGGTTGGGCCGGGGATAGTTCTCGCGGG
TGACCAAAGCCTTGGATGCAGCACGGACCGGGGCACTTTGCACCGAACGC
TTGGGAGCCTTCAGCCCATGGGGAATTGCGGTGCTCAAGCCGGGTGGTGA
TCCAACTCATGGTGCGGGACTGGCCTTGGGCAACCGTGCTAGCTCTTTTT
CCCGTTGCATTTACGAAACCCTGTTTCTCGCGGTCGACCCTGTCTCGTGT
GTGCGGAAAAGGTTCGGCACTTCGGGGAGATCCGTCGAAACTCGAAAGTT
CCGTACGAGGAAATGATTTTCTTCGACGATTGGGACCAGAACTGCAAGGA
CGTGGGCAAGCTCGGTGTCACCTGCGTCGAGTGTCGGAGGGTGAGAATTA
TTGGTAGAGCAGGGTGTGCGGGGTAGTCTATTTCTTGAGTTTCGTGGTCT
GAGTGAAGGTGGTTTCAACCTTTTGCGGTTGAGGGTGTCAAACCATATAT
GCTTGGGAATAAGAAAAAATTTCTGATTGCGATATGGTGGAGGATTGTTA
GGGAAAGGCTGCCTCAAAGACTTTTTGTTTTTGCTCTGGGTGAAGAGAGC
GTTTTTTTGGACACAGTAGGCTGCCAATAAGTAGCTGGGTGAACGTATCC
GCGGGTGCGTTGCTCGTTCATCCCCGTTTTGGGCGACGTGCTGTTGCCCA
AGAGTGCCTATTGCGATCGTGTTCTTCGGGCGCCGTGTCAGCGACCAATC
ACGCGTCTAATATTTTGAGACTACCACGGGAGGGCGACGAGTTGGTTGGG
TCTCCCAGACTCTGATACCGGGTGGCTTGAGTGTGCAGGCTTGCCTCCTC
GCGTTGGGCCTGCTGTGAACTCCTTCTCCCGCTGGCTTCACCCACAACAT
GCGAAAGCTTTCGTGGCCCTCTCTCCCACTCAGCACCCCGGCGTTTGCCA
GTGCCAGGCGCACTGTTTTGCCAGTGCTTCCTAATAACGCGCTCTGCTCT
TGTTTTCTCTGGCTGACCGCGCAATATTACGAACAACCCATCCAGCAGCG
GGGGTCCACGAATACGGCGGTGGTGGGGCAGCTGAAAATGACCGCCTTTT
ATGGGGCATCGACCACCGAATTCAATGTGTAGAACAACTTGATTATTCCC
TCTATGCCAGCCAGTTTCACTCGCCTTGTATAGGGCGATCGCCTTCTTCG
GGGAACCCCCACTGTGTCGCGAACAGACAGTTGTGTCTCACCTGCAGCCG
TTTCACCCTCCCACACCATGTCTTCTCCATGGCGGTTATACCTCATCGCT
GGCAGCAGCTGAACGTGTTCTACCGATAGTCGTTTCCCCACGGCAGACCG
ATAATCTGTGGCCCGAATCTCGTCCCCCCGCCCTACAAAGACTCTCTTCC
ATCCGTTTTACCGTTTTTGCTCGAAACCTGTGTCACAGGGTTTGAGTCGA
GAAGTGTGGACCCGGGGACTAGCCAAATTTGCTGCAGCTAAAGAGAGCCT
GAGGCCGTGACAACCGGTGTTCTTTTTCCATTTTTGCTGAGACGCTTGGA
AATGGCCCGTGGCGGTGGGGTGGGGTAAGACGAATTACATAAATAGCTCT
TGCACCCATCCCATTCGAAGGCAGGCGGCCGGGCTGGTCATTCGTCCAAC
ATGCTTGGATACGCATGTCAGATATGTCATGCGGGGAGAGCACCCTGTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:187544..192543+

>mRNA_E-siliculosus-1a_M_contig88.16805.1 ID=mRNA_E-siliculosus-1a_M_contig88.16805.1|Name=mRNA_E-siliculosus-1a_M_contig88.16805.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1614bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:187544..192543+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTCTGAGAGTGGTTGTGGGGCTAATTTTGGTGTTATTCGTTACGGA
AGAAATCAGCGCGTTCGTTACCGTTCCCACGAGAACAGTTCGAAGAGGGC
AGCATCCGAATCACGCAGGAAAACACCCTACGACGAACGGGCTGCGCATG
ATGATGGGCAAGAAGGGAGGGGCTCGTTCGAAGAAGAAGCGAGGGCGAGG
CGGGATCGGAGACGTCGGCGTGGAGGACGAGGCTGTTGGTATGGAGAAGA
AGGGGGACGCTGCGGCAGAAGAGAGTTATGGGAGTGTGCCTCGCCTGGTT
GTGATGGACCTTGACTACACGTTGTGATGGCTCTGAGAGTGGTTGTGGGG
CTAATTTTGGTGTTATTCGTTACGGAAGAAATCAGCGCGTTCGTTACCGT
TCCCACGAGAACAGTTCGAAGAGGGCAGCATCCGAATCACGCAGGAAAAC
ACCCTACGACGAACGGGCTGCGCATGATGATGGGCAAGAAGGGAGGGGCT
CGTTCGAAGAAGAAGCGAGGGCGAGGCGGGATCGGAGACGTCGGCGTGGA
GGACGAGGCTGTTGGTATGGAGAAGAAGGGGGACGCTGCGGCAGAAGAGA
GTTATGGGAGTGTGCCTCGCCTGGTTGTGATGGACCTTGACTACACGTTG
TGGAAGCCGGAGCTGTACCAGATGAGGGGGGCGCCCTTCACCAAGAAGAA
GGACGGCAAGGTAAGGGATCGCTCGGGCGAGGTGATCGACCTCTTCCCCG
GCGTTCGAGAAGCGCTGCTGGAGGTGCACAGGGGGCATCGCTTCAGGGAC
ACCAAGCTGGCCATCGCTTCGAGGACGTCTCACGAAAGGAAGCCGGAGCT
GTACCAGATGAGGGGGGCGCCCTTCACCAAGAAGAAGGACGGCAAGGTAA
GGGATCGCTCGGGCGAGGTGATCGACCTCTTCCCCGGCGTTCGAGAAGCG
CTGCTGGAGGTGCACAGGGGGCATCGCTTCAGGGACACCAAGCTGGCCAT
CGCTTCGAGGACGTCTCACGAAAGATGGGCGCGGCAAGTTATGGGTCTCA
TCGAGCTTGAGCCCGGCCTCCTGATGCGCAGCGTTTTTTCGTTCACCGAA
ATCTACTCGGGCTCTAAGATGGGCGCGGCAAGTTATGGGTCTCATCGAGC
TTGAGCCCGGCCTCCTGATGCGCAGCGTTTTTTCGTTCACCGAAATCTAC
TCGGGCTCTAAGGTTCGGCACTTCGGGGAGATCCGTCGAAACTCGAAAGT
TCCGTACGAGGAAATGATTTTCTTCGACGATTGGGACCAGAACTGCAAGG
ACGTGGGCAAGCTCGGTGTCACCTGCGTCGAGTGTCGGAGGGTTCGGCAC
TTCGGGGAGATCCGTCGAAACTCGAAAGTTCCGTACGAGGAAATGATTTT
CTTCGACGATTGGGACCAGAACTGCAAGGACGTGGGCAAGCTCGGTGTCA
CCTGCGTCGAGTGTCGGAGGGGTTTGAGTCGAGAAGTGTGGACCCGGGGA
CTAGCCAAATTTGCTGCAGCTAAAGAGAGCCTGAGGCCGTGAGGTTTGAG
TCGAGAAGTGTGGACCCGGGGACTAGCCAAATTTGCTGCAGCTAAAGAGA
GCCTGAGGCCGTGA
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