mRNA_E-siliculosus-1a_M_contig88.16803.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI) HSP 1 Score: 733 bits (1891), Expect = 1.530e-262 Identity = 361/373 (96.78%), Postives = 364/373 (97.59%), Query Frame = 2
Query: 227 MAWNEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPYPHAPITEGSAAPFFVSHPEGDEEAAVDKKVLVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPDTQGRRGELVETASIYQLKNPGLECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1345
MAW EEDERILFG +TRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANP PHAPITEGSAAPFFVSHPEGDEEAAVDKKV VVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRAN EPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ VRP+TQGRRGEL+ETASIYQL NPGLECATNRPSIS AWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL
Sbjct: 1 MAWKEEDERILFGSKTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVDKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-VRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 372
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI) HSP 1 Score: 541 bits (1393), Expect = 5.510e-186 Identity = 282/436 (64.68%), Postives = 326/436 (74.77%), Query Frame = 2
Query: 56 WSVFVRGIIISLHHWNAAASSDDPAAAVAAERTPQNVHS-----DRGLRRIDPLELRRQHAAMAWNEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPYPHAPITEGSAAPFFVSHP-EGDEEAAVDKKVLVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPDTQGRRGELVETASIYQLKNPGLECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1345
WS V I S HW A + DD A + S DRGL +D +L+ +H AMAW EED IL+ G+T YSVI+VE HHTSNL R+KERVRAFED NT VVS+QFA+ A + SA PFFV HP EG VDK+V +V+LK+ + QASHLQASCEDPTETTVL+ISDETC LP G+PPSCR+NVVR FPFN+ R +G PR +LPLGPRDTFPFVS+DRRPLASSRSL FNLQ VRPDT RR ELV+ AS Y+ NP LECATNRP I+ K WQ+LVLDSKFT+CPAGRNP TFRLWEALE GSIPIVSKLDFT P +G S TCGDGD+AWN VAASPF + VSVN+W ELP LLDRL++EPD+YINKLQE+CVAW++ AMTQTYTS+LNFGEGHDLFPQ+GP+F S+
Sbjct: 8 WSAVVLAITSSSRHWVAVSCDDDLAPGRRLSSRTRYSRSELRKTDRGL--VDGHKLQLEHNAMAWKEEDPAILYSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDG-NTTVVSMQFADTLLRA--YDDSAPPFFVGHPAEG-----VDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ-VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQTYTSVLNFGEGHDLFPQDGPLFGSV 432
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE) HSP 1 Score: 306 bits (783), Expect = 2.130e-94 Identity = 168/357 (47.06%), Postives = 228/357 (63.87%), Query Frame = 2
Query: 278 YSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPYPHAPITEGSAAPFFVSHPEGDEEAAVDKKVLVVHLKDIGTHVK---PYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPDTQGRRGELVETASIYQLKNPGLEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1333
YSVIVV SNL R+++RV+A + V+SV+FA+P P + + + F V+H D+ A ++++ ++H D+ + P Q SHL+A+CEDPTE T+L+++DETC LP +P +C SNV R +P+N+ A E R Y+PLGPRD F FVS R AS+R + N V P+T RR L E S YQ + LE A+ P ++ W++L+L S+FT+ P G NPETFR +EALEAGSIPI+SK D+T P + CG GD AWNTVAASPFA+ VSVN W ELP+LLDRL E D ++++LQ +C WY M +TY SLL+FG+G DL+PQ GPI
Sbjct: 65 YSVIVVASNPRPSNLFRDRKRVKAH----SRGVISVRFADPVPRDVVRDYA---FGVAH---DKRA--ERRLRMIHTADLVDKDQAPDPNQMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFV-VDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQADCGEWYDALMNRTYASLLHFGDGLDLWPQAGPI 408
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI) HSP 1 Score: 194 bits (493), Expect = 9.900e-53 Identity = 93/176 (52.84%), Postives = 121/176 (68.75%), Query Frame = 2
Query: 812 QVRPDTQGRRGELVETASIYQLKNPGLEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1333
+V P+T RR L E S YQ + LE A+ P ++ W++L+L S+FT+ P G NPETFR +EALE GSIPI+SK D+T P + CG GD AWNTVAASPFA+ VSV+ W +LP+LLDRL EPD ++++LQ +C AWY M +TY SLL+FG+G DL+PQ GPI
Sbjct: 167 EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQADCGAWYDALMNRTYASLLDFGDGLDLWPQAGPI 342
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.120e-13 Identity = 68/214 (31.78%), Postives = 104/214 (48.60%), Query Frame = 2
Query: 719 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ------QVRPDTQGRRGEL----------VETASIYQLKNPG-------LECATNRP-------SISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNT--VAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAM 1264
YLPL PR F V+D+ R +SR FN+ Q+R D + EL ++AS L G + TN P ++ +++++LDS FTL P+G NPETFRL+EA EAGSIPIV D++ T G+ W ++ +PF V V++W ++ +L+ L +P I ++Q++ + WY M
Sbjct: 202 YLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDLDKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIV---DYS---------TRSGNCKNPWRPFKMSQAPF---VWVDDWTDIQHILEDLISDPARVI-QMQKDLMEWYHSFM 399
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.740e-13 Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 2
Query: 719 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPDTQGRRGELVETASIYQLKNPGLECATNRPS---------ISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYT 1279
YLPLGPR+ F V + L R FN T R LV+ K P ++ I+ ++++++DS FTLCP G NPE +R++EA EAGSIPIV ++ + C + T A PF V +N+W ELP L+ + + P E I ++Q + + WYS MT+ T
Sbjct: 371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSL--TSLSRKVLVKELGPSSEKYPSFVWVVSKWKKQLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEYYR-------SHECEGAFLPLITQGA-PF---VFLNSWTELPAYLEYILQHP-ERIQQMQMDTMEWYSKFMTKVAT 552
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.010e-12 Identity = 66/220 (30.00%), Postives = 96/220 (43.64%), Query Frame = 2
Query: 719 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPDTQGRRGELVETASIYQLKNPGLE----CATNRPSIST------KAW-------------------QELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSL 1285
YLPLGPR F V R FN+ V +T R L + +PG+E ++ P I+ K W +E++LDS FTLCP G NPET+RL+EA EAGSIPIV + + GD W + +PF + V +W + ++L L+ +P + +LQ + +WY MT T++
Sbjct: 296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMM-VTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEVSKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE------------TLSSGDCLNPWRPFKDSGAPF---IWVTDWSTIGEVLKELRADPSR-VQRLQSDLRSWYVSFMTTAITNV 498
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.150e-9 Identity = 56/199 (28.14%), Postives = 95/199 (47.74%), Query Frame = 2
Query: 719 YLPLGPRDTFPFVSDDRR-PLASSRSLFFNL---------QQVRPDTQGRR---GELVETASIYQLKNPGLECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQ 1270
Y PLGPR F V P A R N +++R Q L +++ I+ + + I+ K ++E++LDSKFTLCP G NPE +R++EA EAGS+P++ + + N C + A+ + + +PF V +++W +LP LL+ + ++ + Q AWY+ M++
Sbjct: 300 YFPLGPRAEFERVDQTTGVPAARKRQYAINFVGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEYV------NHKCSN---AFQPLLDSGAPF---VILDSWNDLPQLLEIIHSN-QTFVEEKQRAVRAWYAEYMSK 485
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A7S2KHJ8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHJ8_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.520e-9 Identity = 62/208 (29.81%), Postives = 99/208 (47.60%), Query Frame = 2
Query: 719 YLPLGPR----DTFPFVSDDRRPL---ASSRSLFFNLQQVRPDTQGRR--GELVE----TASIYQLKNPGLECATNRPS---ISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNF 1294
YLPLGPR D + + + + +S R FN + GR ++++ + S ++ + N+ S + +K++ +++L+S FTL PAG NPE FRL+EA+EAGSIP++S LD + C D W SP V V +W E + +L EP E ++K Q + WY+ M+ +F
Sbjct: 842 YLPLGPRKDSWDAYQMLMNQNGSVIAASSQRKYAFNAIFTKSTHAGRSILADVLQMDGNSLSSFEQITDTWQPDPNKNSNDLLDSKSYMKVLLESTFTLAPAGHNPECFRLYEAVEAGSIPVIS-LDKDY------KQHKCKDSLSHW---LDSPI---VIVESWNEAIPTMQKLLEEP-EALDKRQADLHVWYNQYMSSAVHDFESF 1035
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Match: A0A7S1IMT8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IMT8_9EUGL) HSP 1 Score: 70.1 bits (170), Expect = 3.540e-9 Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 2
Query: 719 YLPLGPRDTFPFVSDDRRPLASSRSLFFNL--QQVRPDTQGRRGELVETASIYQLKNPGLECAT-----------NRPS-ISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPF-----AKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLL 1288
YLP G FP ++ AS+R FNL V + + ++ET QL P L N+ +S + ++E++LDS FTL P+G NPE +R++E+LEAGSIP+V+ T A PF A V ++ W +LP L+ R+P +Y + AWY+ + Y +++
Sbjct: 179 YLPTGISYKFPLITLAEHIPASARKYVFNLVCSIVTNKVRQKLKNIIETKLKPQL--PALPVFEHYVYAWSGNYDNKSGYVSQQRFKEVLLDSVFTLMPSGHNPECYRMYESLEAGSIPVVAMEGL--------------------ETHCAHPFTHFMDAPMVWLDTWDQLPTLMQNYTRDPGKYWAQTAA-VTAWYARFKERIYGTIV 364 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16803.1 >prot_E-siliculosus-1a_M_contig88.16803.1 ID=prot_E-siliculosus-1a_M_contig88.16803.1|Name=mRNA_E-siliculosus-1a_M_contig88.16803.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=436bp MRARLWSVFVRGIIISLHHWNAAASSDDPAAAVAAERTPQNVHSDRGLRRback to top mRNA from alignment at E-siliculosus-1a_M_contig88:170208..177241+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16803.1 ID=mRNA_E-siliculosus-1a_M_contig88.16803.1|Name=mRNA_E-siliculosus-1a_M_contig88.16803.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7034bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:170208..177241+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:170208..177241+ >mRNA_E-siliculosus-1a_M_contig88.16803.1 ID=mRNA_E-siliculosus-1a_M_contig88.16803.1|Name=mRNA_E-siliculosus-1a_M_contig88.16803.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2616bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:170208..177241+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |