mRNA_E-siliculosus-1a_M_contig88.16802.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI) HSP 1 Score: 857 bits (2215), Expect = 7.930e-307 Identity = 420/433 (97.00%), Postives = 426/433 (98.38%), Query Frame = 1
Query: 289 MRSVLASWSAVVLAITSSSRHWVAVRCEDDLAPGRRLSSRTRYSRSELRKTDRGLVDGHQLQLEHDAMAWREDDQAILSSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDGNTTVVSMQFADTLPRAYDDSAPPFFVGHPAEGVDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLIISDETCELPELPPGLPPPCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQQVRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSVLNFGEGHDLFPQDGPLFGSV 1587
MRSVLASWSAVVLAITSSSRHWVAV C+DDLAPGRRLSSRTRYSRSELRKTDRGLVDGH+LQLEH+AMAW+E+D AIL SGKTTYSVIIVERLHHTSNLIRDKERVRAFEDGNTTVVSMQFADTL RAYDDSAPPFFVGHPAEGVDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVL+ISDETCELPELPPGLPP CRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQ YTSVLNFGEGHDLFPQDGPLFGSV
Sbjct: 1 MRSVLASWSAVVLAITSSSRHWVAVSCDDDLAPGRRLSSRTRYSRSELRKTDRGLVDGHKLQLEHNAMAWKEEDPAILYSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDGNTTVVSMQFADTLLRAYDDSAPPFFVGHPAEGVDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ-VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQTYTSVLNFGEGHDLFPQDGPLFGSV 432
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI) HSP 1 Score: 518 bits (1335), Expect = 1.180e-174 Identity = 258/374 (68.98%), Postives = 298/374 (79.68%), Query Frame = 1
Query: 490 MAWREDDQAILSSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDG-NTTVVSMQFADTLPRA--YDDSAPPFFVGHPAEG-----VDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLIISDETCELPELPPGLPPPCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQQVRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSVLNFGEGHDLFPQDGPLFGSV 1587
MAW+E+D+ IL KT YSVI+VE HHTSNL R+KERVRAFED NT VVS+QFA+ P A + SA PFFV HP EG VDK+VR+V+LK+ + QASHLQASCEDPTETTVLIISDETC LP G+PP CR+NVVR FPFN+ R + PR +LPLGPRDTFPFVS+DRRPLASSRSL FNLQ VRP+T RR EL++ AS Y+ NP LECATNRP I+ WQ+LVLDSKFT+CPAGRNP TFRLWEALE GSIPIVSKLDFT P +G S TCGDGD+AWN VAASPF + VSVN+W ELP LLDRL++EPD+YINKLQE+CVAW++ AMTQ YTS+LNFGEGHDLFPQ+GP+F S+
Sbjct: 1 MAWKEEDERILFGSKTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHP-EGDEEAAVDKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-VRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 372
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE) HSP 1 Score: 319 bits (817), Expect = 7.650e-97 Identity = 170/354 (48.02%), Postives = 233/354 (65.82%), Query Frame = 1
Query: 532 KTTYSVIIVERLHHTSNLIRDKERVRAFEDGNTTVVSMQFADTLPR-AYDDSAPPFFVGHPAEGVDKRVRLVYLKEFWNKI---NDNQASHLQASCEDPTETTVLIISDETCELPELPPGLPPPCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQQVRPDTSDRRAELVDIASQYESDNPDLEC-ATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGA-LSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSVLNFGEGHDLFPQDGPL 1575
K YSVI+V SNL RD++RV+A G V+S++FAD +PR D A F V H ++R+R+++ + +K + NQ SHL+A+CEDPTE T+L+++DETC LP LP C +NV R +P+N+P + RNA++PLGPRD F FVS R AS+R +L N V P+TS RRA L ++ S Y++ + DLE A+ P +N +W+DL+L S+FT+ P G NP TFR +EALE GSIPI+SK D+T PA + + CG GD AWN VAASPF +AVSVN W ELP LLDRL E D ++++LQ DC W+ + M + Y S+L+FG+G DL+PQ GP+
Sbjct: 62 KVAYSVIVVASNPRPSNLFRDRKRVKAHSRG---VISVRFADPVPRDVVRDYA--FGVAHDKR-AERRLRMIHTADLVDKDQAPDPNQMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFV-VDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQADCGEWYDALMNRTYASLLHFGDGLDLWPQAGPI 408
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI) HSP 1 Score: 201 bits (512), Expect = 4.460e-54 Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = 1
Query: 1054 QVRPDTSDRRAELVDIASQYESDNPDLEC-ATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGA-LSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSVLNFGEGHDLFPQDGPL 1575
+V P+TS RRA L ++ S Y++ + DLE A+ P +N +W+DL+L S+FT+ P G NP TFR +EALEGGSIPI+SK D+T PA + + CG GD AWN VAASPF AVSV+ W +LP LLDRL EPD ++++LQ DC AW+ + M + Y S+L+FG+G DL+PQ GP+
Sbjct: 167 EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQADCGAWYDALMNRTYASLLDFGDGLDLWPQAGPI 342
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 8.360e-14 Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query: 961 FLPLGPRDTFPFVSEDRRPLASSRSLLFN-------------LQQVRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYT 1521
+LPLGPR+ F V + L R FN ++++ P +S++ V + S+++ + +I P E++ +++DS FT+CP G NP +R++EA E GSIPIV ++ + + C +G I +PFV +N W ELPA L+ + Q P+ I ++Q D + W++ MT+ T
Sbjct: 371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSLTSLSRKVLVKELGP-SSEKYPSFVWVVSKWKK-----QLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEYYR-------SHEC-EGAFLPLITQGAPFV---FLNSWTELPAYLEYILQHPER-IQQMQMDTMEWYSKFMTKVAT 552
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.770e-13 Identity = 68/220 (30.91%), Postives = 98/220 (44.55%), Query Frame = 1
Query: 961 FLPLGPRDTFPFVSEDRRPLASSRSLLFNLQQVRPDTSDRRAELVDIASQYESDNPDLE----CATNRPHI------NPKEW-------------------QDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIV--AASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSV 1527
+LPLGPR F V R LFN+ V +T+ R L + + +P +E ++ P I N K W ++++LDS FT+CP G NP T+RL+EA E GSIPIV + T + GD W + +PF+ V DW + +L LR +P + +LQ D +W+ S MT A T+V
Sbjct: 296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMM-VTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEVSKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE------------TLSSGDCLNPWRPFKDSGAPFIW---VTDWSTIGEVLKELRADPSR-VQRLQSDLRSWYVSFMTTAITNV 498
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.420e-11 Identity = 68/225 (30.22%), Postives = 106/225 (47.11%), Query Frame = 1
Query: 952 RNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ------QVRPDTSDRRAELVDIASQYESDNPDLECATNRPHIN--------------PKE-----------WQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNI--VAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQAYTSV 1527
R +LPL PR F V+++ R +SR LFN+ Q+R D D++ + + + N D + P + PKE ++ ++LDS FT+ P+G NP TFRL+EA E GSIPIV ST++ G+ W ++ +PFV V+DW ++ +L+ L +P I ++Q+D + W+ S M A SV
Sbjct: 199 RVRYLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDL-DKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIVD-----------YSTRS-GNCKNPWRPFKMSQAPFVW---VDDWTDIQHILEDLISDPARVI-QMQKDLMEWYHSFMHDAVFSV 406
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.590e-9 Identity = 64/220 (29.09%), Postives = 105/220 (47.73%), Query Frame = 1
Query: 901 NVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRR-PLASSRSLLFNLQQVRPDTSDRRAELVD-IASQYESDNPDLECA-------------TNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPI-VSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQ 1512
NV+ +K R LP + PLGPR F V + P A R N V TS R +L D S+ + NP + + + +I PK++++++LDSKFT+CP G NP +R++EA E GS+P+ V+K + + + Q D + +PFV ++ W++LP LL+ + ++ + Q AW+A M++
Sbjct: 282 NVIGTGMVSKLRGIKLP--LYFPLGPRAEFERVDQTTGVPAARKRQYAINF--VGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEYVNHKCSNAFQPLLD--------SGAPFV---ILDSWNDLPQLLEIIHSN-QTFVEEKQRAVRAWYAEYMSK 485
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A7S2KHJ8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHJ8_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.530e-7 Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 1159 INPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVS-KLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQA 1515
++ K + ++L+S FT+ PAG NP FRL+EA+E GSIP++S D+ Q C D W SP V V W+E + +L +EP+ ++K Q D W+ M+ A
Sbjct: 924 LDSKSYMKVLLESTFTLAPAGHNPECFRLYEAVEAGSIPVISLDKDYKQ--------HKCKDSLSHW---LDSPIV---IVESWNEAIPTMQKLLEEPEA-LDKRQADLHVWYNQYMSSA 1028
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Match: A0A4U5UET9_COLLU (Transmembrane protein 5 n=67 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A4U5UET9_COLLU) HSP 1 Score: 63.5 bits (153), Expect = 9.900e-7 Identity = 51/192 (26.56%), Postives = 84/192 (43.75%), Query Frame = 1
Query: 988 FPFVSEDRRPLASSRSLLFNLQQVRPDTSDRRAELVDIASQYESDNPDLECATN-RPHINPKE-------WQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHAS---AMTQAYTSVL 1530
FP + + + + S+R L N S R L+ + Q D EC T R P+E +Q + S+ T+CP G N +R++EA GS+P+V + L+ TC G + + + + +NDW ELPA+L+R R + + + W+AS M + +T V+
Sbjct: 254 FPMIRPNAQLITSNRPYLCNFLGTVYKNSSRET-LMQVLKQS---GLDKECITTAREKWLPQETADSLRRYQTALAQSELTLCPVGINTECYRIYEACSYGSVPVVEDV---------LTPGTCAAGPSSPLHLLKAAGAPFIFINDWKELPAILERERSMSQEQRVDRRRRLLEWYASFRQQMKERFTEVI 432 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16802.1 >prot_E-siliculosus-1a_M_contig88.16802.1 ID=prot_E-siliculosus-1a_M_contig88.16802.1|Name=mRNA_E-siliculosus-1a_M_contig88.16802.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=530bp MRGELRTENKGTNPLQQAAAQLFRCEHFCEEFAGGARRRGGGVGLPPARYback to top mRNA from alignment at E-siliculosus-1a_M_contig88:163077..169686+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16802.1 ID=mRNA_E-siliculosus-1a_M_contig88.16802.1|Name=mRNA_E-siliculosus-1a_M_contig88.16802.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6610bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:163077..169686+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:163077..169686+ >mRNA_E-siliculosus-1a_M_contig88.16802.1 ID=mRNA_E-siliculosus-1a_M_contig88.16802.1|Name=mRNA_E-siliculosus-1a_M_contig88.16802.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3180bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:163077..169686+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |