mRNA_E-siliculosus-1a_M_contig88.16798.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16798.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16798.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 784 bits (2025), Expect = 8.250e-278
Identity = 526/658 (79.94%), Postives = 551/658 (83.74%), Query Frame = 1 
Query:    1 MASRGGSIVVWLLTTFTILTVFMPQELQVAACSEEIATCEADAVCNECMVVGDTFNQDFEDCNAEERGFCLGYLQEACCQHQVFQTDCLANEAFVAYWWSCALHTCDISYPNADDCSELLGVPVTSGDVTNTGGTPAPTVAAGTLTTSSTXXDSTVPATESPTVFVXXXXXXXXXXXXXXXXXTAADT-VPDPIAXXXXXXXXXXXXXXXXXXAAAAPTASTAVEAGEVTTITVTTNAFDARTDYDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSMASSSAAASETPAPVALPTPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPVIAPTXXXXXXXXXXXXXXXXXXXXXXXXAITPPASXXXXXXXPTSSARDVDITPYPTTELATEGSGSSSADTTTVTSSIDALYSSTGDCTSCLFDDECSECLSVD-ITDENAAEYSECIQEAFTSDVDITDVDSLDADQCEYLLAAYCCLDSASGNDCMAMDEYVELLQCVLADCSFDEITCSGV-------SGANPAVPIAISYLRAVSTIAVGLVVVLVAMV 1947
            MASRGGS+VVWLL TFTILTVFMP EL VAACSEE ATCEADAVCNECM+VGDTFN +FEDCNA+   +C   LQ +CCQ+Q  +TDCLANEAFVAYWWSC + +CDISYPNA+DCSELLGVPVTSGDVT TGGTPAPTVAA TLTT   XX              XXXXXXXXXXXXXXXXX AAD  VPDPIA  XXXXXXXXXXXXXXXX AAAPT   AVEAGEVTT+TVTTNAFDARTD DGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQ++FELGEAQLVTSVSVAF KGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDS  +SSAAASETPAPVALPTPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXX   A+TPPAS       PTSSARDVDITP P TELAT GSG SS DTTTVTS IDALYSSTGDCTSC++D+ECSECLS D   DENA EYSECIQE FT+ VDITD D     QCEY+LA YCCL SAS NDCMAMDEYVEL+QCVLADCSFDEITCSGV       SGA PAVP+AISYLRAVST+A+G V VLVAMV
Sbjct:   25 MASRGGSVVVWLLATFTILTVFMPLELHVAACSEETATCEADAVCNECMLVGDTFNPEFEDCNADGNSYCAANLQYSCCQNQALETDCLANEAFVAYWWSCWMFSCDISYPNAEDCSELLGVPVTSGDVTYTGGTPAPTVAADTLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADAAVPDPIAAGXXXXXXXXXXXXXXXXXAAAPTXXXAVEAGEVTTVTVTTNAFDARTDDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSTVASSAAASETPAPVALPTPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXSTSAVTPPASTSDPTPAPTSSARDVDITPSPATELATVGSGPSSEDTTTVTSGIDALYSSTGDCTSCIYDEECSECLSADGFNDENAVEYSECIQETFTTTVDITDFD-----QCEYMLAVYCCLSSASENDCMAMDEYVELIQCVLADCSFDEITCSGVIGAGAAGSGAGPAVPLAISYLRAVSTVALGFVAVLVAMV 661
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.560e-20
Identity = 72/177 (40.68%), Postives = 102/177 (57.63%), Query Frame = 1 
Query:  667 VEAGEVTTITVTTNAFDART-DYDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSMASS-SAAASETPAPVALPT 1191
            VEAGE+ T+T T + +D R  D  GC P+GCT   TRDGD++++SRWSC+  L        G  C I ++LG    +  + +A ++GDTR RT+ + V+G+L    TS GTTSG E+ ++ G  G   V   G E   L+  E+LSI+E EI V + +A   S     TP+P   PT
Sbjct:  180 VEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPEL--------GGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQV-VTITGAE---LSDSEWLSIVETEIMVYNGVAPPPSPTTPATPSPTLPPT 344
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.420e-19
Identity = 71/179 (39.66%), Postives = 103/179 (57.54%), Query Frame = 1 
Query:  658 STAVEAGEVTTITVTTNAFDART-DYDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAV-GDSMASSSAAASETPAPVALP 1188
            +T VEAG +  +T T+  FD R  D +GC P GCT E TRDGD++D SRWSC+  L        G  C I ++LG    ++ + +A +KG TR RT+++ V+G L    TS GTT G E  +L G +G    ++  ++ S     E++SI E +I V  DS+ S  + ++ TPAPV  P
Sbjct:  183 TTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSL--------GGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDS-----EWVSITETDIMVLSDSVVSPPSPSTTTPAPVFAP 348
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 9.770e-19
Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 1 
Query:  667 VEAGEVTTITVTTNAFDARTDYD-GCAPDGCTGENTRDGDLTD-NSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTAD-EFLSIIEVEIAVGD 1131
            VEA  + T+T   + +D R   D GC P GC  E TRDGD T   SRWSC   L     G AG  C+I + LG    +T +++A FKGD RTRTL IN++   + V TS GTT+G ET E+D            +E  G+  D E+LSI+EVEI V D
Sbjct:   25 VEASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPAL-----GDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVD-------TTGRWIEIVGVLEDSEWLSIMEVEILVDD 170
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.000e-18
Identity = 68/156 (43.59%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:  670 EAGEVTTITVTTNAFDARTDYD-GCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFEL-DGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGD 1131
            EAG V ++T   + FD R+    GC PDGC   NTRDGD++D SRWSC   L      A+G  C I F L + + +  + +A +KGDTRTRT+++ V+G      TS GTT+G E+  L D G     V+ L      L  DE+LSI+EVEI V D
Sbjct:   26 EAGTVMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLD-----ASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQ----VVEL---VGDLNDDEWLSILEVEIDVDD 169
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.060e-17
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = 1 
Query:  667 VEAGEVTTITVTTNAFDARTDYD-GCAPDGCTGENTRDGDLTD-NSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGD 1131
            VEA  + T+T   + +D     + GC P GC  E TRDGD+T   SRWSC   L     G AG EC+I + LG    +++V++A +KGD RTRTL+I+++   +   TS GTT+G ET ELD  A    V+ + +E S     E+LSI+EVEI + D
Sbjct:   26 VEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPAL-----GDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDTMAQWISVVGV-LEDS-----EWLSIMEVEIMIED 171
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.140e-17
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  667 VEAGEVTTITVTTNAFDART-DYDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAV 1125
            V+A + TT+    NA+D RT +Y GC PDGC    TRD    D SRWSCS  L +A       +C+I ++  E Q +  + + F+KGD R RTL +  +    + +TS GT+S  ET++++          L ME+  L  DE++SI EV   V
Sbjct:    5 VDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDA-------QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDIN----TDETKWLSMEALNLDDDEWISITEVRFMV 147
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.790e-17
Identity = 64/158 (40.51%), Postives = 89/158 (56.33%), Query Frame = 1 
Query:  667 VEAGEVTTITVTTNAFDARTDYD-GCAPDGCTGENTRDGDLTD-NSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTAD-EFLSIIEVEIAVGD 1131
            VEA  +  +T     +D R   + GC P GC  E TRDGD T   SRW+C   L     G AG EC+I + LG    ++S+++A +KGD RTRTL I+++   +   TS GTT+G ET ELD        +   +   G+ AD E+LSI+EV+I + D
Sbjct:    8 VEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPAL-----GDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELD-------TMGRWISIVGVLADSEWLSIMEVKIMIDD 153
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-15
Identity = 67/165 (40.61%), Postives = 88/165 (53.33%), Query Frame = 1 
Query:  643 AAPTASTAVEAGEVTTITVTTNAFDARTDYDGCAPDG---CTGENTRDGDLTD-NSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAV 1125
            A PT   AVE G  T + V++ A D R   DGC   G   CT  NTRDG  ++  SRWSC+  LV+  G      CQI F   E Q +  + VAF+KG+ RTRTL + +NGE+     S        TF   G   A  V ++ +ES  L +DE++S+IEV I V
Sbjct:   81 ALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEG-----PCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADA----TFNTLG-VTATDVSTVMLESVALLSDEWISLIEVLIFV 235
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.930e-14
Identity = 67/165 (40.61%), Postives = 88/165 (53.33%), Query Frame = 1 
Query:  643 AAPTASTAVEAGEVTTITVTTNAFDARTDYDGCAPDG---CTGENTRDGDLTD-NSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTSVSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAV 1125
            A PT   AVE G  T + V++ A D R   DGC   G   CT  NTRDG  ++  SRWSC+  LV+  G      CQI F   E Q +  + VAF+KG+ RTRTL + +NGE+     S        TF   G   A  V ++ +ES  L +DE++S+IEV I V
Sbjct:  332 ALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEG-----PCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADA----TFNTLG-VTATDVSTVMLESVALLSDEWISLIEVLIFV 486
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G277_ECTSI8.250e-27879.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL48_ECTSI7.560e-2040.68Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KL74_9PHAE2.420e-1939.66F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE9.770e-1944.30F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5L1V3_9PHAE1.000e-1843.59F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FTH1_ECTSI2.060e-1742.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G122_ECTSI2.140e-1737.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KH45_9PHAE9.790e-1740.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F4_ECTSI1.100e-1540.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI1.930e-1440.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:114766..117760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1950
Model size1975
Exons4
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG4886@1,KOG0619@2759
EggNOG free text desc.regulation of response to stimulus
Seed eggNOG ortholog2880.D7FL48
Seed ortholog evalue1.4e-20
Seed ortholog score108.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16798.1prot_E-siliculosus-1a_M_contig88.16798.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 114766..117735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936344.5148907-CDS-E-siliculosus-1a_M_contig88:114765..1151921622936344.5148907-CDS-E-siliculosus-1a_M_contig88:114765..115192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 114766..115192 +
1696251035.1454268-CDS-E-siliculosus-1a_M_contig88:114765..1151921696251035.1454268-CDS-E-siliculosus-1a_M_contig88:114765..115192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 114766..115192 +
1622936344.5328553-CDS-E-siliculosus-1a_M_contig88:115474..1156471622936344.5328553-CDS-E-siliculosus-1a_M_contig88:115474..115647Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 115475..115647 +
1696251035.1615024-CDS-E-siliculosus-1a_M_contig88:115474..1156471696251035.1615024-CDS-E-siliculosus-1a_M_contig88:115474..115647Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 115475..115647 +
1622936344.548238-CDS-E-siliculosus-1a_M_contig88:116077..1165871622936344.548238-CDS-E-siliculosus-1a_M_contig88:116077..116587Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 116078..116587 +
1696251035.170766-CDS-E-siliculosus-1a_M_contig88:116077..1165871696251035.170766-CDS-E-siliculosus-1a_M_contig88:116077..116587Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 116078..116587 +
1622936344.566219-CDS-E-siliculosus-1a_M_contig88:116895..1177351622936344.566219-CDS-E-siliculosus-1a_M_contig88:116895..117735Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 116896..117735 +
1696251035.1795683-CDS-E-siliculosus-1a_M_contig88:116895..1177351696251035.1795683-CDS-E-siliculosus-1a_M_contig88:116895..117735Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 116896..117735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936344.5842848-UTR-E-siliculosus-1a_M_contig88:117735..1177601622936344.5842848-UTR-E-siliculosus-1a_M_contig88:117735..117760Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 117736..117760 +
1696251035.187978-UTR-E-siliculosus-1a_M_contig88:117735..1177601696251035.187978-UTR-E-siliculosus-1a_M_contig88:117735..117760Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 117736..117760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16798.1

>prot_E-siliculosus-1a_M_contig88.16798.1 ID=prot_E-siliculosus-1a_M_contig88.16798.1|Name=mRNA_E-siliculosus-1a_M_contig88.16798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=650bp
MASRGGSIVVWLLTTFTILTVFMPQELQVAACSEEIATCEADAVCNECMV
VGDTFNQDFEDCNAEERGFCLGYLQEACCQHQVFQTDCLANEAFVAYWWS
CALHTCDISYPNADDCSELLGVPVTSGDVTNTGGTPAPTVAAGTLTTSST
TTDSTVPATESPTVFVVTSSMTAGSTVPATAPPTAADTVPDPIAAETPGP
VAAPVPAPTATPAAAAPTASTAVEAGEVTTITVTTNAFDARTDYDGCAPD
GCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQIIFELGEAQLVTS
VSVAFFKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGV
LSLGMESSGLTADEFLSIIEVEIAVGDSMASSSAAASETPAPVALPTPAS
VASETPAPVALPTPASVASETPTPAALSTPDPVIAPTESPVPAPSPTPLG
VAVDTPAPSTSAITPPASASDPTPAPTSSARDVDITPYPTTELATEGSGS
SSADTTTVTSSIDALYSSTGDCTSCLFDDECSECLSVDITDENAAEYSEC
IQEAFTSDVDITDVDSLDADQCEYLLAAYCCLDSASGNDCMAMDEYVELL
QCVLADCSFDEITCSGVSGANPAVPIAISYLRAVSTIAVGLVVVLVAMV*
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mRNA from alignment at E-siliculosus-1a_M_contig88:114766..117760+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16798.1 ID=mRNA_E-siliculosus-1a_M_contig88.16798.1|Name=mRNA_E-siliculosus-1a_M_contig88.16798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2995bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:114766..117760+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGTCCAGGGGCGGTTCTATTGTCGTGTGGCTCCTCACCACGTTCAC
CATCCTTACAGTGTTCATGCCACAGGAGCTGCAAGTAGCGGCCTGCTCGG
AAGAGATAGCCACGTGCGAGGCAGACGCCGTGTGCAACGAATGCATGGTC
GTGGGCGACACGTTCAACCAAGATTTTGAGGACTGCAATGCCGAAGAAAG
AGGCTTTTGCCTCGGATATCTGCAGGAGGCCTGCTGCCAACACCAGGTGT
TTCAGACTGACTGCCTCGCAAACGAGGCGTTCGTGGCGTACTGGTGGTCG
TGTGCTCTTCATACCTGCGACATCTCGTATCCGAACGCGGACGATTGCTC
AGAGCTCCTCGGCGTTCCCGTTACTTCCGGCGACGTCACTAACACTGGGG
GTACACCGGCCCCAACCGTCGCGGCAGGTAGGTCCGACTCCACATGAATG
AACAGTTAGCGCCCTTGTTAAGAAACGTCAATTTGGGGTCGAGGTTCAAC
ATCTTTTTTCATCGCCACAGGGTGACACCCACAGGTCCCGAAGGGACACC
TTCAGCACATGCTGAGAAGTCATGAAGTCATGTTACTGTTCACAGCGTAC
CGAAGCCGACTGAATTGATCGAAGCGAAGACGAGCTGCGCACTTTCAATG
AAGTAACCCGCCCAAGAACGTCCGCCTGTTTCGCACGAAACCCGTGTATT
TTTTTCCAGGTACCCTGACCACTTCTTCCACGACAACAGACAGCACGGTC
CCGGCTACCGAATCCCCTACGGTATTTGTGGTCACTTCTTCCATGACAGC
AGGCAGCACGGTCCCGGCTACCGCACCCCCCACGGCAGCCGACACAGTGC
CTGATCCCATCGCGGCGGAAACACCGGGGCCCGTGAGTAAAAGCCGTTCT
AACACAGGCAGCGTTCCTGTAGCTAGTTTGATTATTTGACGTAGTCGACT
TGGGTAATTTCGATGCTACAGAAACGCGCTAGCAGTTAGGAACTTCGCAG
TTTAGAAATTGAGCCTCAAAAAAATAATTGAAGAACTTGGCCATAAGAAC
AGGTGCTCAGTTCCGACGTGGTATTACTTACATGAAACCCGCCTTTGTGG
TGTACCAATGTGCATACAAATAAGAACTCCAAACACGGCGACTAGGTACA
GATGAACTCCGGTGGGGGGTGACCCCAGCGGCAGGAAGTCTCAGATTCGG
GGCCGGAGGGGGGGGCACCTCGGGAAACAGCCTTGACTCCACTGAGTTGA
GCCCTCGGCCGTCACCTTCTTGAACAGCGGTGCGCCGTTACCGTTGCCTC
TTGTTTGTTAAGGTCGCAGCGCCTGTTCCCGCGCCTACGGCCACTCCCGC
AGCCGCGGCTCCGACTGCCTCCACGGCCGTCGAAGCTGGCGAGGTGACGA
CCATCACCGTCACAACCAACGCGTTCGACGCCAGGACCGACTATGACGGG
TGCGCCCCGGACGGGTGCACGGGGGAGAACACCCGCGACGGCGACCTGAC
GGACAACTCCCGTTGGTCCTGCTCCGCGGGCCTCGTAGAGGCCGCTGGTG
GTGCCGCTGGAGAGGAGTGCCAGATCATCTTCGAGCTTGGTGAGGCCCAG
CTCGTCACGAGCGTGTCGGTGGCGTTCTTCAAGGGGGACACCAGGACCCG
TACGCTCAACATCAACGTGAACGGCGAGCTCTTCGAAGTGGTGACGTCGG
GTGGTACCACGTCCGGGCTCGAGACCTTTGAACTCGACGGCGGGGCGGGA
GCGCCCGGAGTGCTGTCGCTGGGGATGGAGTCCTCCGGGCTCACCGCCGA
CGAGTTCCTTAGCATCATCGAGGTATTGCGTTCTTGCATGCAGAGAGCGC
TATCGACTGAACCGTGAAACGCTGCAAATATCTTCGACATCAGAACCACT
ACAGCCCGAACGGCTGCACCTTTCAATGTCATTCTAGCAGGTCCATCTCA
TTTCTAGGTGGATGCCGGGCGAATCAGGTAGATGAAGCGAAGAAATCGCC
GCGGTGTTTCCATTCCGATACTGCTCTATTCGACCAGCCAAACCTCCCAC
GCACGTATCGCTCTGTTGCGAATTAAACGCGGTCGGAAACTCAACGCGCC
AATTTTTGTCCCGTCCTTGTCTCTGTGCAGGTGGAAATTGCAGTGGGCGA
TTCCATGGCGAGCTCTTCTGCAGCGGCCTCGGAAACGCCTGCCCCTGTGG
CATTGCCAACACCTGCCTCTGTGGCCTCGGAAACGCCTGCCCCTGTAGCC
TTGCCAACGCCTGCCTCTGTGGCCTCGGAAACGCCCACCCCTGCGGCCTT
GTCAACGCCTGACCCCGTGATTGCCCCCACCGAGAGTCCCGTTCCTGCGC
CTTCGCCTACCCCTTTGGGTGTCGCCGTCGACACGCCTGCACCCTCCACT
TCTGCCATCACCCCGCCGGCGTCGGCCTCCGACCCTACGCCGGCTCCTAC
CTCGAGCGCCCGGGATGTGGACATCACTCCGTATCCCACCACCGAGCTCG
CGACGGAAGGGAGCGGCTCCAGCTCGGCAGACACCACTACAGTAACGAGC
AGCATTGACGCCTTGTATTCATCGACCGGTGACTGCACTTCTTGTCTTTT
CGACGATGAGTGCTCAGAGTGCCTCAGCGTCGACATTACCGATGAGAACG
CAGCCGAGTACAGCGAGTGCATACAGGAAGCGTTCACCTCAGACGTCGAC
ATCACAGATGTCGACAGCCTAGACGCCGACCAGTGCGAGTATTTGCTTGC
GGCGTACTGTTGCCTCGACTCTGCCTCCGGGAACGACTGTATGGCCATGG
ATGAGTACGTCGAGCTTCTCCAGTGTGTGCTAGCGGATTGCTCATTTGAC
GAGATCACCTGTTCGGGCGTCAGCGGTGCTAATCCCGCCGTCCCAATCGC
CATCAGCTATTTGAGAGCTGTCTCGACAATTGCAGTGGGACTTGTTGTCG
TTCTTGTCGCGATGGTGTAAAACGTCCGTGTGAGGTCTGGGCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:114766..117760+

>mRNA_E-siliculosus-1a_M_contig88.16798.1 ID=mRNA_E-siliculosus-1a_M_contig88.16798.1|Name=mRNA_E-siliculosus-1a_M_contig88.16798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3900bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:114766..117760+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGTCCAGGGGCGGTTCTATTGTCGTGTGGCTCCTCACCACGTTCAC
CATCCTTACAGTGTTCATGCCACAGGAGCTGCAAGTAGCGGCCTGCTCGG
AAGAGATAGCCACGTGCGAGGCAGACGCCGTGTGCAACGAATGCATGGTC
GTGGGCGACACGTTCAACCAAGATTTTGAGGACTGCAATGCCGAAGAAAG
AGGCTTTTGCCTCGGATATCTGCAGGAGGCCTGCTGCCAACACCAGGTGT
TTCAGACTGACTGCCTCGCAAACGAGGCGTTCGTGGCGTACTGGTGGTCG
TGTGCTCTTCATACCTGCGACATCTCGTATCCGAACGCGGACGATTGCTC
AGAGCTCCTCGGCGTTCCCGTTACTTCCGGCGACGTCACTAACACTGGGG
GTACACCGGCCCCAACCGTCGCGGCAGATGGCGTCCAGGGGCGGTTCTAT
TGTCGTGTGGCTCCTCACCACGTTCACCATCCTTACAGTGTTCATGCCAC
AGGAGCTGCAAGTAGCGGCCTGCTCGGAAGAGATAGCCACGTGCGAGGCA
GACGCCGTGTGCAACGAATGCATGGTCGTGGGCGACACGTTCAACCAAGA
TTTTGAGGACTGCAATGCCGAAGAAAGAGGCTTTTGCCTCGGATATCTGC
AGGAGGCCTGCTGCCAACACCAGGTGTTTCAGACTGACTGCCTCGCAAAC
GAGGCGTTCGTGGCGTACTGGTGGTCGTGTGCTCTTCATACCTGCGACAT
CTCGTATCCGAACGCGGACGATTGCTCAGAGCTCCTCGGCGTTCCCGTTA
CTTCCGGCGACGTCACTAACACTGGGGGTACACCGGCCCCAACCGTCGCG
GCAGGTACCCTGACCACTTCTTCCACGACAACAGACAGCACGGTCCCGGC
TACCGAATCCCCTACGGTATTTGTGGTCACTTCTTCCATGACAGCAGGCA
GCACGGTCCCGGCTACCGCACCCCCCACGGCAGCCGACACAGTGCCTGAT
CCCATCGCGGCGGAAACACCGGGGCCCGTACCCTGACCACTTCTTCCACG
ACAACAGACAGCACGGTCCCGGCTACCGAATCCCCTACGGTATTTGTGGT
CACTTCTTCCATGACAGCAGGCAGCACGGTCCCGGCTACCGCACCCCCCA
CGGCAGCCGACACAGTGCCTGATCCCATCGCGGCGGAAACACCGGGGCCC
GTCGCAGCGCCTGTTCCCGCGCCTACGGCCACTCCCGCAGCCGCGGCTCC
GACTGCCTCCACGGCCGTCGAAGCTGGCGAGGTGACGACCATCACCGTCA
CAACCAACGCGTTCGACGCCAGGACCGACTATGACGGGTGCGCCCCGGAC
GGGTGCACGGGGGAGAACACCCGCGACGGCGACCTGACGGACAACTCCCG
TTGGTCCTGCTCCGCGGGCCTCGTAGAGGCCGCTGGTGGTGCCGCTGGAG
AGGAGTGCCAGATCATCTTCGAGCTTGGTGAGGCCCAGCTCGTCACGAGC
GTGTCGGTGGCGTTCTTCAAGGGGGACACCAGGACCCGTACGCTCAACAT
CAACGTGAACGGCGAGCTCTTCGAAGTGGTGACGTCGGGTGGTACCACGT
CCGGGCTCGAGACCTTTGAACTCGACGGCGGGGCGGGAGCGCCCGGAGTG
CTGTCGCTGGGGATGGAGTCCTCCGGGCTCACCGCCGACGAGTTCCTTAG
CATCATCGAGGTCGCAGCGCCTGTTCCCGCGCCTACGGCCACTCCCGCAG
CCGCGGCTCCGACTGCCTCCACGGCCGTCGAAGCTGGCGAGGTGACGACC
ATCACCGTCACAACCAACGCGTTCGACGCCAGGACCGACTATGACGGGTG
CGCCCCGGACGGGTGCACGGGGGAGAACACCCGCGACGGCGACCTGACGG
ACAACTCCCGTTGGTCCTGCTCCGCGGGCCTCGTAGAGGCCGCTGGTGGT
GCCGCTGGAGAGGAGTGCCAGATCATCTTCGAGCTTGGTGAGGCCCAGCT
CGTCACGAGCGTGTCGGTGGCGTTCTTCAAGGGGGACACCAGGACCCGTA
CGCTCAACATCAACGTGAACGGCGAGCTCTTCGAAGTGGTGACGTCGGGT
GGTACCACGTCCGGGCTCGAGACCTTTGAACTCGACGGCGGGGCGGGAGC
GCCCGGAGTGCTGTCGCTGGGGATGGAGTCCTCCGGGCTCACCGCCGACG
AGTTCCTTAGCATCATCGAGGTGGAAATTGCAGTGGGCGATTCCATGGCG
AGCTCTTCTGCAGCGGCCTCGGAAACGCCTGCCCCTGTGGCATTGCCAAC
ACCTGCCTCTGTGGCCTCGGAAACGCCTGCCCCTGTAGCCTTGCCAACGC
CTGCCTCTGTGGCCTCGGAAACGCCCACCCCTGCGGCCTTGTCAACGCCT
GACCCCGTGATTGCCCCCACCGAGAGTCCCGTTCCTGCGCCTTCGCCTAC
CCCTTTGGGTGTCGCCGTCGACACGCCTGCACCCTCCACTTCTGCCATCA
CCCCGCCGGCGTCGGCCTCCGACCCTACGCCGGCTCCTACCTCGAGCGCC
CGGGATGTGGACATCACTCCGTATCCCACCACCGAGCTCGCGACGGAAGG
GAGCGGCTCCAGCTCGGCAGACACCACTACAGTAACGAGCAGCATTGACG
CCTTGTATTCATCGACCGGTGACTGCACTTCTTGTCTTTTCGACGATGAG
TGCTCAGAGTGCCTCAGCGTCGACATTACCGATGAGAACGCAGCCGAGTA
CAGCGAGTGCATACAGGAAGCGTTCACCTCAGACGTCGACATCACAGATG
TCGACAGCCTAGACGCCGACCAGTGCGAGTATTTGCTTGCGGCGTACTGT
TGCCTCGACTCTGCCTCCGGGAACGACTGTATGGCCATGGATGAGTACGT
CGAGCTTCTCCAGTGTGTGCTAGCGGATTGCTCATTTGACGAGATCACCT
GTTCGGGCGTCAGCGGTGCTAATCCCGCCGTCCCAATCGCCATCAGCTAT
TTGAGAGCTGTCTCGACAATTGCAGTGGGACTTGTTGTCGTTCTTGTCGC
GATGGTGTAAGTGGAAATTGCAGTGGGCGATTCCATGGCGAGCTCTTCTG
CAGCGGCCTCGGAAACGCCTGCCCCTGTGGCATTGCCAACACCTGCCTCT
GTGGCCTCGGAAACGCCTGCCCCTGTAGCCTTGCCAACGCCTGCCTCTGT
GGCCTCGGAAACGCCCACCCCTGCGGCCTTGTCAACGCCTGACCCCGTGA
TTGCCCCCACCGAGAGTCCCGTTCCTGCGCCTTCGCCTACCCCTTTGGGT
GTCGCCGTCGACACGCCTGCACCCTCCACTTCTGCCATCACCCCGCCGGC
GTCGGCCTCCGACCCTACGCCGGCTCCTACCTCGAGCGCCCGGGATGTGG
ACATCACTCCGTATCCCACCACCGAGCTCGCGACGGAAGGGAGCGGCTCC
AGCTCGGCAGACACCACTACAGTAACGAGCAGCATTGACGCCTTGTATTC
ATCGACCGGTGACTGCACTTCTTGTCTTTTCGACGATGAGTGCTCAGAGT
GCCTCAGCGTCGACATTACCGATGAGAACGCAGCCGAGTACAGCGAGTGC
ATACAGGAAGCGTTCACCTCAGACGTCGACATCACAGATGTCGACAGCCT
AGACGCCGACCAGTGCGAGTATTTGCTTGCGGCGTACTGTTGCCTCGACT
CTGCCTCCGGGAACGACTGTATGGCCATGGATGAGTACGTCGAGCTTCTC
CAGTGTGTGCTAGCGGATTGCTCATTTGACGAGATCACCTGTTCGGGCGT
CAGCGGTGCTAATCCCGCCGTCCCAATCGCCATCAGCTATTTGAGAGCTG
TCTCGACAATTGCAGTGGGACTTGTTGTCGTTCTTGTCGCGATGGTGTAA
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