mRNA_E-siliculosus-1a_M_contig88.16791.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16791.1 vs. uniprot
Match: D7G283_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G283_ECTSI) HSP 1 Score: 980 bits (2534), Expect = 0.000e+0 Identity = 506/558 (90.68%), Postives = 517/558 (92.65%), Query Frame = 1
Query: 1 MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIVSHGLETAGTVGGRSSTGGRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANGSSRRASLFEWLVAKKGTGGA-ELSEYMSAIECGSDEQQDAIHDEEQDLGRGFSDYEASMDMNSLRRQAAVVEV-AEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGENNRSEGSASAALNGNDTRDILAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPGFHQSHDETQEELTIDEPTTLAAADIKDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQXXXXXXXXXXXXXXXXXXXXXXPASPCSGVILNTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQTDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 1668
MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPI+SHGLETAGT GGRSSTG RGGSRSDMDRMIPEGASDSSPATTAGGNQTSTAN SSRRASLFEWLVAKKGTGG E S+YMSA+ECGSDEQQDA+H+EEQD GRGFSDYE+SMDMNSLRRQAAVVEV AEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSG++NRSEGSASAALNGNDT+ ILAASAGRSLPRPRSTSKSS TG DDEAGDAVLP FHQSHDE QEELTIDEPTT AA DI DIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQ PASPCSGVIL+TSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQG PSSRRNLLSWLSIPSSLRRA+EDAPVGYGKIQ DKDLD VDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR
Sbjct: 1 MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIISHGLETAGTAGGRSSTGRRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANSSSRRASLFEWLVAKKGTGGGGEFSQYMSAVECGSDEQQDAVHNEEQDFGRGFSDYESSMDMNSLRRQAAVVEVLAEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTKHILAASAGRSLPRPRSTSKSSHTGSDDEAGDAVLPEFHQSHDEAQEELTIDEPTTPAAVDINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPSDEFDREHRQQHTKHDDYDQWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGPPSSRRNLLSWLSIPSSLRRASEDAPVGYGKIQKDKDLDSVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 558
BLAST of mRNA_E-siliculosus-1a_M_contig88.16791.1 vs. uniprot
Match: A0A6H5L7W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W7_9PHAE) HSP 1 Score: 874 bits (2257), Expect = 1.270e-315 Identity = 481/582 (82.65%), Postives = 499/582 (85.74%), Query Frame = 1
Query: 10 DPTEPGSGTRRFSSAVYSSRLAGATRTFRDP-----------------------------IVSHGLETAGTVGGRSSTGGRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANGSSRRASLFEWLVAKKGTGGAELSEYMSAIECGSDEQQDAIHDEEQDLGRGFSDYEASMDMNSLRRQAAVVEVAEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGENNRSEGSASAALNGNDTRDILAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPGFHQSHDETQEELTIDEPTTLAAADIKDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQXXXXXXXXXXXXXXXXXXXXXXPASPCSGVILNTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQTDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 1668
D T P RF + Y R +G TR FRDP IVSHGLETAGT GGRSSTG RGGSRSDMDRM +GASDSSP T+ GGNQ STA G SRRASLFEWLV KKGTGGAE SEY+SA+E GSDEQQDA+HDEEQDLGRGFSDYE+SM+MNSLRR++AVVEVAEEGAT TIPSIDNISSDPPLTAE LE HTRTHS G+NNRSE +SA LNGNDTRDIL ASAGRSLPRPR TS SSRTGGDDEAGDAVLP FHQSHDETQEE+TIDEPTT AAADI+DIYADDVT GESRRVTFLS TMGLTVDISDPMQP XXXXXXXXXXXXXXXXXXXXXXPASPCSGVIL+TSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGR AAG NQGLGAEDRRVIPLSSLANIGPAELYR GAPSSRRNLLSWLSIPSSLRRAN D+PV Y KIQ DKDLDGVD G AGLVEAVPVLALSYWVEG+PRWVGD PKRLLV PDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR
Sbjct: 20 DTTTPVRRNSRFPFSTYPGRFSGTTRMFRDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSHGLETAGTPGGRSSTGRRGGSRSDMDRMTSKGASDSSPTTSPGGNQASTAYGGSRRASLFEWLVPKKGTGGAEFSEYVSAVESGSDEQQDAVHDEEQDLGRGFSDYESSMNMNSLRRESAVVEVAEEGATATIPSIDNISSDPPLTAEVLEQHTRTHSGGKNNRSESRSSATLNGNDTRDILTASAGRSLPRPRGTSMSSRTGGDDEAGDAVLPEFHQSHDETQEEITIDEPTTPAAADIEDIYADDVTHGESRRVTFLSRTMGLTVDISDPMQPXXXXXXXXXXXXXXXXXXXXXXXPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRRTAAGGNQGLGAEDRRVIPLSSLANIGPAELYRHGAPSSRRNLLSWLSIPSSLRRANGDSPVDYRKIQKDKDLDGVDNGKAGLVEAVPVLALSYWVEGKPRWVGDHPKRLLVMPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 601 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16791.1 >prot_E-siliculosus-1a_M_contig88.16791.1 ID=prot_E-siliculosus-1a_M_contig88.16791.1|Name=mRNA_E-siliculosus-1a_M_contig88.16791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=557bp MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIVSHGLETAGTVGGRSback to top mRNA from alignment at E-siliculosus-1a_M_contig88:21491..24489- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16791.1 ID=mRNA_E-siliculosus-1a_M_contig88.16791.1|Name=mRNA_E-siliculosus-1a_M_contig88.16791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2999bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:21491..24489- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:21491..24489- >mRNA_E-siliculosus-1a_M_contig88.16791.1 ID=mRNA_E-siliculosus-1a_M_contig88.16791.1|Name=mRNA_E-siliculosus-1a_M_contig88.16791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3342bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:21491..24489- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |