mRNA_E-siliculosus-1a_M_contig88.16789.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16789.1 vs. uniprot
Match: D7G285_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G285_ECTSI) HSP 1 Score: 827 bits (2136), Expect = 1.100e-283 Identity = 696/779 (89.35%), Postives = 702/779 (90.12%), Query Frame = 3
Query: 198 MVNPAIDQSNQPPLPFPAPGGGGHSNGHHASGPSCSAITNGDAGLRMQGVTQTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDDGRVTEVKSWRHCDGSTTRSTSSPRRXXXXXSPPPSSLSRXXXXXXXXXXXXXXXXXXXXFSGGEIAMQEEEDEDGLQVTGFDLRAALKCESISETRGYLRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKEIEVLKKAYFLAIETDPAVACDTSDNNNNGTAKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGGMEXXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAAEEGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAEDSCDSKNGTNAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPPPTAFGPFGGGGGGVSAXXXXXXXXXXXXXXXXXXXXXXXGGDSGSSSSVDGRGSEGTDAAXXXXXXXXXXXXXXXXXXXXXXXTTFGSSVGSFTGSFGSGRXXXXXVDAGVAPAEAAAQQPPPPQMLPGVSCGGSDCSGAGVGGEADAYGDXXXXXXXXXXXXXE-AAMMQGNGFPDGGAAAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV 2528
MVNPA+DQSNQPPLPFP H+NGHHASGPS SAITNGDAGLRM GV QTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDD R E KSWRH D S TRSTSS XXXXX PPPSSLSRXXXXXXXXXXXXXXXXXXX FSGGEIA EEEDEDGLQVTGFDLRAALK ESISETR +LRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKE+EVLKKAYFLAIETDPA A DTSDNNNNG AKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGG+ XXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAA EGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDS DSKNGTNAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPP TAFGPFGGGG VSA XXXXXXXXXXXXXXXXXXXGGDSGSSS VDGRGSEGTDAA XXXXXXXXXXXXXXXXXXX TTFGSSV RXXXX VDAGVAPAEAAAQQPPP QMLPGVSCGGSDCSGAGVGGEAD GD XXXXXXXXXXE AAMMQGNGFPDGG+AAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV
Sbjct: 1 MVNPAMDQSNQPPLPFPPXXXXXHTNGHHASGPSSSAITNGDAGLRM-GVNQTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDDSRAKESKSWRHSDRSRTRSTSSXXXXXXXXXPPPSSLSRXXXXXXXXXXXXXXXXXXX-FSGGEIARHEEEDEDGLQVTGFDLRAALKSESISETRRFLRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKEVEVLKKAYFLAIETDPAAAWDTSDNNNNGAAKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGGVXXXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAAGEGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKQRTETARQDDXXEDSGDSKNGTNAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPPLTAFGPFGGGG--VSAFGGGXXXXXXXXXXXXXXXXXXXGGDSGSSS-VDGRGSEGTDAAAXXXXXXXXXXXXXXXXXXXSS-TTFGSSVXXXXXXXXXXRXXXXGVDAGVAPAEAAAQQPPP-QMLPGVSCGGSDCSGAGVGGEADPSGDGPAXXXXXXXXXXEEAAMMQGNGFPDGGSAAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV 772 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16789.1 >prot_E-siliculosus-1a_M_contig88.16789.1 ID=prot_E-siliculosus-1a_M_contig88.16789.1|Name=mRNA_E-siliculosus-1a_M_contig88.16789.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=778bp MVNPAIDQSNQPPLPFPAPGGGGHSNGHHASGPSCSAITNGDAGLRMQGVback to top mRNA from alignment at E-siliculosus-1a_M_contig88:10780..17727- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16789.1 ID=mRNA_E-siliculosus-1a_M_contig88.16789.1|Name=mRNA_E-siliculosus-1a_M_contig88.16789.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6948bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:10780..17727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:10780..17727- >mRNA_E-siliculosus-1a_M_contig88.16789.1 ID=mRNA_E-siliculosus-1a_M_contig88.16789.1|Name=mRNA_E-siliculosus-1a_M_contig88.16789.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4668bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:10780..17727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |