mRNA_E-siliculosus-1a_M_contig879.16786.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig879.16786.1
Unique NamemRNA_E-siliculosus-1a_M_contig879.16786.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig879.16786.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.080e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 2 
Query:    2 ALMVQYVEAVVRVAKEEAAVFVVTGKRIMVVSSHLGQENTGTLRHLAWRESGPWAFFSPCANDAG 196
            ALMV+YVEAVV+VAKEEAAVFV+TG RIMVVSSHLGQ+NTGTLRH+AWRESGPW FFSPCAN+AG
Sbjct:  429 ALMVRYVEAVVQVAKEEAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 493
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BLAST of mRNA_E-siliculosus-1a_M_contig879.16786.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.310e-27
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 2 
Query:    2 ALMVQYVEAVVRVAKEEAAVFVVTGKRIMVVSSHLGQENTGTLRHLAWRESGPWAFFSPCANDAG 196
            ALMV+YVEAVV+VAKEE AVFV+TG RIMVVSS LGQ NTGTLRH+AWRESGPW FFSPCAN+AG
Sbjct:  287 ALMVRYVEAVVQVAKEETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAG 351
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BLAST of mRNA_E-siliculosus-1a_M_contig879.16786.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.230e-20
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:   71 TGKRIMVVSSHLGQENTGTLRHLAWRESGPWAFFSPCANDAG 196
            TG RIMVVSSHLGQ+NTGTLRH+AWRESGPW FFSPCAN+AG
Sbjct:    2 TGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 43
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig879.16786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE2.080e-2987.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT6_9PHAE5.310e-2784.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGM5_9PHAE4.230e-2088.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig879contigE-siliculosus-1a_M_contig879:24..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size198
Model size200
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.705934-CDS-E-siliculosus-1a_M_contig879:25..1031622936340.705934-CDS-E-siliculosus-1a_M_contig879:25..103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 26..103 -
1696251033.8122923-CDS-E-siliculosus-1a_M_contig879:25..1031696251033.8122923-CDS-E-siliculosus-1a_M_contig879:25..103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 26..103 -
1622936340.7202892-CDS-E-siliculosus-1a_M_contig879:350..4701622936340.7202892-CDS-E-siliculosus-1a_M_contig879:350..470Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 351..470 -
1696251033.822277-CDS-E-siliculosus-1a_M_contig879:350..4701696251033.822277-CDS-E-siliculosus-1a_M_contig879:350..470Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 351..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig879.16786.1prot_E-siliculosus-1a_M_contig879.16786.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig879 26..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig879.16786.1

>prot_E-siliculosus-1a_M_contig879.16786.1 ID=prot_E-siliculosus-1a_M_contig879.16786.1|Name=mRNA_E-siliculosus-1a_M_contig879.16786.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=66bp
GVNGAIRGGSRSSSEGRSGSLRRDRQAHHGSIFASRARKHGHFEALGMAR
EWPMGVFLAVRQRCWG
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mRNA from alignment at E-siliculosus-1a_M_contig879:24..470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig879.16786.1 ID=mRNA_E-siliculosus-1a_M_contig879.16786.1|Name=mRNA_E-siliculosus-1a_M_contig879.16786.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig879:24..470- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGTTAATGGTGCAATACGTGGAGGCAGTCGTTCGAGTAGCGAAGGAAG
AAGCGGCAGTCTTCGTCGTGACCGGCAAGCGCATCATGGTAGTATCTTCG
CATCTCGGGCAAGAAAACACGTGAGTTTGTCCCACGCAACACGAGAACCA
GTTTGATGGTGTATTCGACACGAGAGAGTTTACAATTTTGGTAGACCGAA
AATTATGATTAGGACACGACCACCAAGGTACGGGTGCTTCACGGAGCTGT
GCAGCAACGCAGGAGGGTACGGTCGCTCTACTGGGACCCCCCTGAGACAT
AAATTTTCCCGCTTGTGTCTAACCCAACTGTGCGTGTTGCCCGCCCATGT
TGTCGCGCGTCTGACAGGGGCACTTTGAGGCACTTGGCATGGCGAGAGAG
TGGCCCATGGGCGTTTTTCTCGCCGTGCGCCAACGATGCTGGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig879:24..470-

>mRNA_E-siliculosus-1a_M_contig879.16786.1 ID=mRNA_E-siliculosus-1a_M_contig879.16786.1|Name=mRNA_E-siliculosus-1a_M_contig879.16786.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig879:24..470- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGTTAATGGTGCAATACGTGGAGGCAGTCGTTCGAGTAGCGAAGGAAG
AAGCGGCAGTCTTCGTCGTGACCGGCAAGCGCATCATGGTAGTATCTTCG
CATCTCGGGCAAGAAAACACGGCGTTAATGGTGCAATACGTGGAGGCAGT
CGTTCGAGTAGCGAAGGAAGAAGCGGCAGTCTTCGTCGTGACCGGCAAGC
GCATCATGGTAGTATCTTCGCATCTCGGGCAAGAAAACACGGGCACTTTG
AGGCACTTGGCATGGCGAGAGAGTGGCCCATGGGCGTTTTTCTCGCCGTG
CGCCAACGATGCTGGGGTGGGCACTTTGAGGCACTTGGCATGGCGAGAGA
GTGGCCCATGGGCGTTTTTCTCGCCGTGCGCCAACGATGCTGGGGT
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