mRNA_E-siliculosus-1a_M_contig877.16784.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig877.16784.1
Unique NamemRNA_E-siliculosus-1a_M_contig877.16784.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig877.16784.1 vs. uniprot
Match: D7G7T3_ECTSI (GDSL-lilke lipase/acylhydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 9.560e-62
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 MDTSDLNVALVGDSVLDDHYWLDHPANDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE 297
            MDTSDLNVALVGDSVLDDHYWLDHP NDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE
Sbjct:    1 MDTSDLNVALVGDSVLDDHYWLDHPPNDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE 99
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BLAST of mRNA_E-siliculosus-1a_M_contig877.16784.1 vs. uniprot
Match: A0A7S2TYU9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYU9_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 1.680e-16
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   19 NVALVGDSVLDDHYWLDHPANDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE 297
            +V L+GDSVLD  YWL     DVR + ER LK    ++  +  N+AVDES I  VL G  P   Y   RR  KMEPYP+++ GVVRPL LLRE
Sbjct:   21 HVVLMGDSVLDTFYWLRDKKKDVRYEMERLLK--EDNKDSKCTNYAVDESQIDHVLVGICPNPGYVRSRRWNKMEPYPMDQRGVVRPLVLLRE 111
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BLAST of mRNA_E-siliculosus-1a_M_contig877.16784.1 vs. uniprot
Match: X6P0L7_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P0L7_RETFI)

HSP 1 Score: 75.9 bits (185), Expect = 3.060e-15
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   22 VALVGDSVLDDHYWLDHPANDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE 297
            + L+GDSVLD+ +WLD  + D+    ++T      +    + N AVDESTI  VL+GR PA  Y NGR++ K++ YP +  G V PLK +++
Sbjct:   37 LVLMGDSVLDNFFWLDDKSTDLEKVLDKTF-----EEKADILNLAVDESTIKSVLKGRKPAIQYVNGRKENKLKAYPTQSSGKVEPLKNIKD 123
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BLAST of mRNA_E-siliculosus-1a_M_contig877.16784.1 vs. uniprot
Match: X6N473_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N473_RETFI)

HSP 1 Score: 49.7 bits (117), Expect = 9.010e-5
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  148 NFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE 297
            N A+DES IS ++ GR P  +  + R K +M PYPV+  G++ PLKLLR+
Sbjct:    2 NLALDESAISDIINGRKPDDNLVSAREKYQMCPYPVDNSGLLLPLKLLRD 51
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig877.16784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7T3_ECTSI9.560e-6298.99GDSL-lilke lipase/acylhydrolase family protein n=2... [more]
A0A7S2TYU9_9EUKA1.680e-1651.61Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
X6P0L7_RETFI3.060e-1541.30Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
X6N473_RETFI9.010e-548.00Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig877contigE-siliculosus-1a_M_contig877:1329..1990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size297
Model size297
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CBI1@1,2SQ5S@2759
Seed eggNOG ortholog2880.D7G7T3
Seed ortholog evalue2.5e-49
Seed ortholog score201.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.6145816-CDS-E-siliculosus-1a_M_contig877:1328..14201622936340.6145816-CDS-E-siliculosus-1a_M_contig877:1328..1420Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 1329..1420 -
1696251033.7801063-CDS-E-siliculosus-1a_M_contig877:1328..14201696251033.7801063-CDS-E-siliculosus-1a_M_contig877:1328..1420Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 1329..1420 -
1622936340.6292396-CDS-E-siliculosus-1a_M_contig877:1785..19901622936340.6292396-CDS-E-siliculosus-1a_M_contig877:1785..1990Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 1786..1990 -
1696251033.7939434-CDS-E-siliculosus-1a_M_contig877:1785..19901696251033.7939434-CDS-E-siliculosus-1a_M_contig877:1785..1990Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 1786..1990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig877.16784.1prot_E-siliculosus-1a_M_contig877.16784.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig877 1329..1990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig877.16784.1

>prot_E-siliculosus-1a_M_contig877.16784.1 ID=prot_E-siliculosus-1a_M_contig877.16784.1|Name=mRNA_E-siliculosus-1a_M_contig877.16784.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=99bp
MDTSDLNVALVGDSVLDDHYWLDHPANDVRAQTERTLKIAYPDRSIRVDN
FAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLRE
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mRNA from alignment at E-siliculosus-1a_M_contig877:1329..1990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig877.16784.1 ID=mRNA_E-siliculosus-1a_M_contig877.16784.1|Name=mRNA_E-siliculosus-1a_M_contig877.16784.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig877:1329..1990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATACGTCCGATCTGAATGTCGCGCTCGTAGGGGACAGCGTCTTAGA
TGACCACTACTGGCTCGATCACCCTGCAAACGACGTTCGCGCGCAAACTG
AACGGACTCTCAAGATCGCCTACCCGGATCGGAGCATTCGAGTGGACAAT
TTCGCTGTCGATGAATCGACCATCTCGTGTGTCTTACGTGGGCGTGCCCC
AGCAGGTGTGTCGTGTGTCGGCGGTGTACGTGAGGGAAAGGGGTGTTTTT
CCGTTCGCTTTTCAGCAGTTGGCTCTGAAGATGTGCAACAACAGGTATTC
GTTGTCGTCATCGTTGTGGAAGATCAAATGACATACGCACCAGGGTTGTA
GGGGATGCAACATCGCGGTTGTGATACATATTTACCTGTGTAGCATCAAG
ATGTTGATTTCGAGCTCACACGTGTCACGTGTGGTTTGTGGAGACTGGCT
ACGTATGCAGGTCGCTAGACCGCACAAAGGTGAGTGTTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCAACAACAGCGGTGACGATGAGACGTCC
TTTGTCTTTTGTTTGACCAGCCCACTACAGGAATGGCCGCAGAAAGGCGA
AGATGGAGCCGTACCCGGTGGAAGAGGATGGTGTGGTGAGACCATTGAAG
CTCTTGCGCGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig877:1329..1990-

>mRNA_E-siliculosus-1a_M_contig877.16784.1 ID=mRNA_E-siliculosus-1a_M_contig877.16784.1|Name=mRNA_E-siliculosus-1a_M_contig877.16784.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=594bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig877:1329..1990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATACGTCCGATCTGAATGTCGCGCTCGTAGGGGACAGCGTCTTAGA
TGACCACTACTGGCTCGATCACCCTGCAAACGACGTTCGCGCGCAAACTG
AACGGACTCTCAAGATCGCCTACCCGGATCGGAGCATTCGAGTGGACAAT
TTCGCTGTCGATGAATCGACCATCTCGTGTGTCTTACGTGGGCGTGCCCC
AGCAGATGGATACGTCCGATCTGAATGTCGCGCTCGTAGGGGACAGCGTC
TTAGATGACCACTACTGGCTCGATCACCCTGCAAACGACGTTCGCGCGCA
AACTGAACGGACTCTCAAGATCGCCTACCCGGATCGGAGCATTCGAGTGG
ACAATTTCGCTGTCGATGAATCGACCATCTCGTGTGTCTTACGTGGGCGT
GCCCCAGCAGCCCACTACAGGAATGGCCGCAGAAAGGCGAAGATGGAGCC
GTACCCGGTGGAAGAGGATGGTGTGGTGAGACCATTGAAGCTCTTGCGCG
AACCCACTACAGGAATGGCCGCAGAAAGGCGAAGATGGAGCCGTACCCGG
TGGAAGAGGATGGTGTGGTGAGACCATTGAAGCTCTTGCGCGAA
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