mRNA_E-siliculosus-1a_M_contig873.16782.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig873.16782.1
Unique NamemRNA_E-siliculosus-1a_M_contig873.16782.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A0R6M4Y3_UNDPI (50S ribosomal protein L14, chloroplastic n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4Y3_UNDPI)

HSP 1 Score: 232 bits (592), Expect = 3.550e-77
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKA SRKDGTSIRFDDNAAVIIN DKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI
Sbjct:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAASRKDGTSIRFDDNAAVIINMDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 121
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BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A8E5XRJ8_9PHAE (50S ribosomal protein L14, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 5.450e-72
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQPQTYLTVADNTGAKKIMCIR+LGG R YAKLGDII+GVVKEA PNML KRSDIVKAV+IRT+K VSRKDGTSIRFDDNAAVIIN DKNP+GTRIFGPIAREIRDK+FTKIVSLAPEVI
Sbjct:    1 MIQPQTYLTVADNTGAKKIMCIRILGGNRHYAKLGDIIVGVVKEAAPNMLIKRSDIVKAVIIRTRKVVSRKDGTSIRFDDNAAVIINVDKNPRGTRIFGPIAREIRDKEFTKIVSLAPEVI 121
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BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A7S6U9Y5_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Y5_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.750e-68
Identity = 103/121 (85.12%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQ QT LT+ADNTGAKK+MCIRVLGG RKYA++GDIIIGVVKEA PNM+ KRSDIV+AV++RTKKAVSRKDGT+IRFDDNAAV+IN DKNP+GTRIFGPIAREIRDK+FTKIVSLAPEVI
Sbjct:    1 MIQTQTCLTIADNTGAKKLMCIRVLGGNRKYAQVGDIIIGVVKEALPNMIIKRSDIVRAVIVRTKKAVSRKDGTNIRFDDNAAVVINNDKNPRGTRIFGPIAREIRDKEFTKIVSLAPEVI 121
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BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: B2XTE5_HETAK (50S ribosomal protein L14, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE5_HETAK)

HSP 1 Score: 202 bits (514), Expect = 2.790e-65
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQPQT LTVADNTGAKK+MCIRVLGG R YA +GDIIIGVVK+A PNM TKRSDIV+AVV+RTKK + RKDG SIRFDDNAAVIIN D NPKGTRIFGPIAREIRD+DF KIVSLA EV+
Sbjct:    1 MIQPQTLLTVADNTGAKKVMCIRVLGGNRSYASIGDIIIGVVKDAIPNMATKRSDIVRAVVVRTKKTIRRKDGLSIRFDDNAAVIINNDNNPKGTRIFGPIAREIRDRDFMKIVSLAAEVV 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: RK14_GUITH (50S ribosomal protein L14, chloroplastic n=7 Tax=Cryptophyceae TaxID=3027 RepID=RK14_GUITH)

HSP 1 Score: 200 bits (509), Expect = 1.620e-64
Identity = 95/121 (78.51%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQ QTYLTVADN+GAKKIMCIR+LGG RKYA +GD+IIGVVK+ATPNM  KRSD+V+AV++RTK  + RKDG SIRFDDNAAVIIN + NP+GTR+FGPIARE+RDKDFTKIVSLAPEV+
Sbjct:    1 MIQTQTYLTVADNSGAKKIMCIRILGGNRKYASIGDVIIGVVKDATPNMPVKRSDVVRAVIMRTKNTIRRKDGMSIRFDDNAAVIINKENNPRGTRVFGPIARELRDKDFTKIVSLAPEVL 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A516ZA13_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA13_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.680e-63
Identity = 95/121 (78.51%), Postives = 109/121 (90.08%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQPQTYLT+ADNTGA+KIMCIR+LGG RKY ++GD+IIGVVK+A+PNM  KRSDIV+AVV+RT+  V R DG SIRFDDNAAVIIN + NP+GTRIFGPIAREIRDK FTKIVSLAPEV+
Sbjct:    1 MIQPQTYLTIADNTGARKIMCIRILGGNRKYGRIGDVIIGVVKDASPNMPIKRSDIVRAVVVRTRHTVRRNDGMSIRFDDNAAVIINKENNPRGTRIFGPIAREIRDKRFTKIVSLAPEVL 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: B7T1X4_VAULI (50S ribosomal protein L14, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X4_VAULI)

HSP 1 Score: 197 bits (500), Expect = 3.800e-63
Identity = 98/121 (80.99%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQ Q+YLTVADNTGAKKIMCI VLGG R+YAK+GDIIIGVVKEA PNM  KRSDI++AVV+RTKKA+ R DGT I+FDDNAAVIIN +KNP+GTRIFGPIAREIRDK+F+KIVSLAPEV+
Sbjct:    1 MIQSQSYLTVADNTGAKKIMCICVLGGNRQYAKVGDIIIGVVKEAIPNMPIKRSDIIRAVVVRTKKAIKRIDGTLIQFDDNAAVIINLEKNPRGTRIFGPIAREIRDKEFSKIVSLAPEVL 121
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BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A023HCF1_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A023HCF1_9STRA)

HSP 1 Score: 196 bits (499), Expect = 5.400e-63
Identity = 96/121 (79.34%), Postives = 108/121 (89.26%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MI PQT LTVADNTGAKKIMCIRVLGG RKYAK+GD IIGVVKEATPNM  KRSD+V+AVV+RT+K + R DG  IRFDDNAAVI+N D NP+GTRIFGP+AREIRDK+F+KIVSLAPEV+
Sbjct:    1 MIYPQTLLTVADNTGAKKIMCIRVLGGSRKYAKIGDTIIGVVKEATPNMPIKRSDVVRAVVVRTRKTIRRPDGMFIRFDDNAAVIVNMDSNPRGTRIFGPVAREIRDKNFSKIVSLAPEVL 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A7R6WDW7_9EUKA (50S ribosomal protein L14, chloroplastic n=1 Tax=Haptophyceae sp. NIES-3900 TaxID=2748608 RepID=A0A7R6WDW7_9EUKA)

HSP 1 Score: 196 bits (498), Expect = 7.680e-63
Identity = 91/121 (75.21%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MIQPQT L VADN+GAKK+MCIR+LGG RKYA LGD+I+GVVKEA+PNM  KRSD+V+AVV+RTKK V R +GTS+RFDDNAAVIIN + NP+GTR+FGP+ARE+RDK+FTKI+SLAPEV+
Sbjct:    1 MIQPQTCLQVADNSGAKKVMCIRILGGNRKYATLGDVIVGVVKEASPNMPVKRSDVVRAVVVRTKKTVRRNEGTSVRFDDNAAVIINKENNPRGTRVFGPVARELRDKNFTKIISLAPEVL 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Match: A0A2U9NM75_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NM75_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.200e-62
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 1 
Query:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 363
            MI PQT L VADNTGAKKIMCIRVLGG RKYAK+GD IIGVVKEA PNML KRSDIV+A+++RT K + R+DG SIRFDDNA VI+N + NPKGTR+FGP+AREIRDK+F+KIVSLAPEV+
Sbjct:    1 MIYPQTILNVADNTGAKKIMCIRVLGGHRKYAKIGDTIIGVVKEALPNMLIKRSDIVRAIIVRTSKTIRRQDGMSIRFDDNAVVIVNLENNPKGTRVFGPVAREIRDKNFSKIVSLAPEVL 121
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig873.16782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6M4Y3_UNDPI3.550e-7798.3550S ribosomal protein L14, chloroplastic n=55 Tax=... [more]
A0A8E5XRJ8_9PHAE5.450e-7290.0850S ribosomal protein L14, chloroplastic n=1 Tax=I... [more]
A0A7S6U9Y5_9STRA1.750e-6885.1250S ribosomal protein L14, chloroplastic n=1 Tax=S... [more]
B2XTE5_HETAK2.790e-6582.6450S ribosomal protein L14, chloroplastic n=2 Tax=H... [more]
RK14_GUITH1.620e-6478.5150S ribosomal protein L14, chloroplastic n=7 Tax=C... [more]
A0A516ZA13_9STRA2.680e-6378.5150S ribosomal protein L14, chloroplastic n=1 Tax=F... [more]
B7T1X4_VAULI3.800e-6380.9950S ribosomal protein L14, chloroplastic n=1 Tax=V... [more]
A0A023HCF1_9STRA5.400e-6379.3450S ribosomal protein L14, chloroplastic n=1 Tax=L... [more]
A0A7R6WDW7_9EUKA7.680e-6375.2150S ribosomal protein L14, chloroplastic n=1 Tax=H... [more]
A0A2U9NM75_9STRA2.200e-6276.8650S ribosomal protein L14, chloroplastic n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig873contigE-siliculosus-1a_M_contig873:5261..5626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size366
Model size366
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0093@1,KOG0901@2759
EggNOG free text desc.large ribosomal subunit rRNA binding
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0008150,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0031974,GO:0031976,GO:0031984,GO:0032991,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0070013,GO:0070180,GO:0097159,GO:0098798,GO:1901363,GO:1990904
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02874
Preferred namerpl14
Seed eggNOG ortholog2880.D1J742
Seed ortholog evalue8.6e-60
Seed ortholog score236.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.4783869-CDS-E-siliculosus-1a_M_contig873:5260..56261622936340.4783869-CDS-E-siliculosus-1a_M_contig873:5260..5626Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig873 5261..5626 +
1696251033.7206535-CDS-E-siliculosus-1a_M_contig873:5260..56261696251033.7206535-CDS-E-siliculosus-1a_M_contig873:5260..5626Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig873 5261..5626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig873.16782.1prot_E-siliculosus-1a_M_contig873.16782.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig873 5261..5626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig873.16782.1

>prot_E-siliculosus-1a_M_contig873.16782.1 ID=prot_E-siliculosus-1a_M_contig873.16782.1|Name=mRNA_E-siliculosus-1a_M_contig873.16782.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=122bp
MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNML
TKRSDIVKAVVIRTKKAVSRKDGTSIRFDDNAAVIINTDKNPKGTRIFGP
IAREIRDKDFTKIVSLAPEVI*
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mRNA from alignment at E-siliculosus-1a_M_contig873:5261..5626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig873.16782.1 ID=mRNA_E-siliculosus-1a_M_contig873.16782.1|Name=mRNA_E-siliculosus-1a_M_contig873.16782.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig873:5261..5626+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATACAACCACAAACGTATTTAACAGTGGCCGACAATACAGGTGCGAA
AAAAATTATGTGTATTCGTGTGTTAGGTGGCAGACGCAAATATGCAAAAC
TTGGAGATATTATTATTGGGGTTGTAAAAGAAGCAACACCAAATATGCTA
ACTAAAAGGTCTGACATCGTGAAAGCTGTAGTTATCCGAACaAAAAAAGC
TGTTTCAAGAAAGGATGGTACTAGTATTAGGTTTGATGATAATGCTGCTG
TTATTATTAATACCGACAAAAATCCTAAAGGAACAAGAATTTTTGGTCCA
ATTGCAAGAGAAATTCGTGATAAGGATTTTACTAAAATTGTTTCATTAGC
TCCTGAGGTTATTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig873:5261..5626+

>mRNA_E-siliculosus-1a_M_contig873.16782.1 ID=mRNA_E-siliculosus-1a_M_contig873.16782.1|Name=mRNA_E-siliculosus-1a_M_contig873.16782.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig873:5261..5626+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATACAACCACAAACGTATTTAACAGTGGCCGACAATACAGGTGCGAA
AAAAATTATGTGTATTCGTGTGTTAGGTGGCAGACGCAAATATGCAAAAC
TTGGAGATATTATTATTGGGGTTGTAAAAGAAGCAACACCAAATATGCTA
ACTAAAAGGTCTGACATCGTGAAAGCTGTAGTTATCCGAACaAAAAAAGC
TGTTTCAAGAAAGGATGGTACTAGTATTAGGTTTGATGATAATGCTGCTG
TTATTATTAATACCGACAAAAATCCTAAAGGAACAAGAATTTTTGGTCCA
ATTGCAAGAGAAATTCGTGATAAGGATTTTACTAAAATTGTTTCATTAGC
TCCTGAGGTTATTTAAATGATACAACCACAAACGTATTTAACAGTGGCCG
ACAATACAGGTGCGAAAAAAATTATGTGTATTCGTGTGTTAGGTGGCAGA
CGCAAATATGCAAAACTTGGAGATATTATTATTGGGGTTGTAAAAGAAGC
AACACCAAATATGCTAACTAAAAGGTCTGACATCGTGAAAGCTGTAGTTA
TCCGAACaAAAAAAGCTGTTTCAAGAAAGGATGGTACTAGTATTAGGTTT
GATGATAATGCTGCTGTTATTATTAATACCGACAAAAATCCTAAAGGAAC
AAGAATTTTTGGTCCAATTGCAAGAGAAATTCGTGATAAGGATTTTACTA
AAATTGTTTCATTAGCTCCTGAGGTTATTTAA
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