mRNA_E-siliculosus-1a_M_contig871.16780.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig871.16780.1
Unique NamemRNA_E-siliculosus-1a_M_contig871.16780.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig871.16780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig871contigE-siliculosus-1a_M_contig871:4034..4440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size120
Model size156
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig871.16780.1prot_E-siliculosus-1a_M_contig871.16780.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig871 4034..4406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.2455585-CDS-E-siliculosus-1a_M_contig871:4033..41031622936340.2455585-CDS-E-siliculosus-1a_M_contig871:4033..4103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig871 4034..4103 -
1696251033.6557515-CDS-E-siliculosus-1a_M_contig871:4033..41031696251033.6557515-CDS-E-siliculosus-1a_M_contig871:4033..4103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig871 4034..4103 -
1622936340.3380623-CDS-E-siliculosus-1a_M_contig871:4356..44061622936340.3380623-CDS-E-siliculosus-1a_M_contig871:4356..4406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig871 4357..4406 -
1696251033.6665285-CDS-E-siliculosus-1a_M_contig871:4356..44061696251033.6665285-CDS-E-siliculosus-1a_M_contig871:4356..4406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig871 4357..4406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.3535519-UTR-E-siliculosus-1a_M_contig871:4406..44401622936340.3535519-UTR-E-siliculosus-1a_M_contig871:4406..4440Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig871 4407..4440 -
1696251033.6775095-UTR-E-siliculosus-1a_M_contig871:4406..44401696251033.6775095-UTR-E-siliculosus-1a_M_contig871:4406..4440Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig871 4407..4440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig871.16780.1

>prot_E-siliculosus-1a_M_contig871.16780.1 ID=prot_E-siliculosus-1a_M_contig871.16780.1|Name=mRNA_E-siliculosus-1a_M_contig871.16780.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=40bp
MARECTPASRPYSRTCDTLGTWCGDSPRNTWLRRVPTVEG
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mRNA from alignment at E-siliculosus-1a_M_contig871:4034..4440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig871.16780.1 ID=mRNA_E-siliculosus-1a_M_contig871.16780.1|Name=mRNA_E-siliculosus-1a_M_contig871.16780.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=407bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig871:4034..4440- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGGCGAACATTGACAAGGGAGAATTTTCAGGAGAATGGCGCGAGAATGTA
CACCGGCATCCAGACCGTATTCAAGGACATGTGAGCAACGAGTAGATGCG
TCGCTGCTACTGACTTACCCGCTGTGGCCTTGTGTAGTTTCGATGGAAGC
AATTAGACGGACATGATATCGCCTGTTGGGAGTCTATCCAACTGTGTGTT
CGTGACATGAACCGTTTAGGCGATGAGGTGTTTGTGTCCTGTAGCGAGTG
CAGATAGATGTGGTCTTACACAGCCGCACGTTTCTGTTGTTCTCGTTCGT
TCGGGGTGCGCCCTGTGTTGCTTGTTGCTATTTCTAGCACCCTAGGGACA
TGGTGTGGCGATTCACCAAGGAACACGTGGCTTCGACGAGTGCCTACTGT
CGAAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig871:4034..4440-

>mRNA_E-siliculosus-1a_M_contig871.16780.1 ID=mRNA_E-siliculosus-1a_M_contig871.16780.1|Name=mRNA_E-siliculosus-1a_M_contig871.16780.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=240bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig871:4034..4440- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGCGAGAATGTACACCGGCATCCAGACCGTATTCAAGGACATGTGA
ATGGCGCGAGAATGTACACCGGCATCCAGACCGTATTCAAGGACATGTGA
CACCCTAGGGACATGGTGTGGCGATTCACCAAGGAACACGTGGCTTCGAC
GAGTGCCTACTGTCGAAGGGCACCCTAGGGACATGGTGTGGCGATTCACC
AAGGAACACGTGGCTTCGACGAGTGCCTACTGTCGAAGGG
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