mRNA_E-siliculosus-1a_M_contig87.16771.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16771.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16771.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:608032..609132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size411
Model size415
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16771.1prot_E-siliculosus-1a_M_contig87.16771.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 608035..609132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936338.5286312-UTR-E-siliculosus-1a_M_contig87:608031..6080341622936338.5286312-UTR-E-siliculosus-1a_M_contig87:608031..608034Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 608032..608034 +
1696251032.7856493-UTR-E-siliculosus-1a_M_contig87:608031..6080341696251032.7856493-UTR-E-siliculosus-1a_M_contig87:608031..608034Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 608032..608034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936338.544968-CDS-E-siliculosus-1a_M_contig87:608034..6081471622936338.544968-CDS-E-siliculosus-1a_M_contig87:608034..608147Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 608035..608147 +
1696251032.7987056-CDS-E-siliculosus-1a_M_contig87:608034..6081471696251032.7987056-CDS-E-siliculosus-1a_M_contig87:608034..608147Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 608035..608147 +
1622936338.5589783-CDS-E-siliculosus-1a_M_contig87:608541..6088061622936338.5589783-CDS-E-siliculosus-1a_M_contig87:608541..608806Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 608542..608806 +
1696251032.8132806-CDS-E-siliculosus-1a_M_contig87:608541..6088061696251032.8132806-CDS-E-siliculosus-1a_M_contig87:608541..608806Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 608542..608806 +
1622936338.574555-CDS-E-siliculosus-1a_M_contig87:609099..6091321622936338.574555-CDS-E-siliculosus-1a_M_contig87:609099..609132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 609100..609132 +
1696251032.8234687-CDS-E-siliculosus-1a_M_contig87:609099..6091321696251032.8234687-CDS-E-siliculosus-1a_M_contig87:609099..609132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 609100..609132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16771.1

>prot_E-siliculosus-1a_M_contig87.16771.1 ID=prot_E-siliculosus-1a_M_contig87.16771.1|Name=mRNA_E-siliculosus-1a_M_contig87.16771.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=137bp
MTGYVQKDEGRSWYQFDSVGLTQDFCRVALANYRRKAAGVLKDNAKIQIN
KKSFWPVMINLSQKEYFPLKMSGAQLALYAIQSGEYGPCYSWISSTSSQG
IPVEKAVSFWRCWTAHAEVQKQDIYHVFFDTRPTCGC
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mRNA from alignment at E-siliculosus-1a_M_contig87:608032..609132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16771.1 ID=mRNA_E-siliculosus-1a_M_contig87.16771.1|Name=mRNA_E-siliculosus-1a_M_contig87.16771.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:608032..609132+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCATGACTGGATATGTCCAGAAAGATGAAGGTCGCTCTTGGTATCAGTT
CGACAGTGTCGGGCTCACACAGGATTTCTGCAGGGTGGCCCTTGCGAACT
ACCGCCGGAAAGCAGCGTGAGTAGTAAACTTCATTTCTTTACATTTCATT
TTTTTTCCCGTTCACATTCTGTTTTTGTTGTATCCCGTCCTGTTTCTACA
CCCTCCTCTTGTCTCATTTATTGTTTTGGTTGAGCTTGTCGTCATATCCG
CGGTTATCGTTTCCGGTGTAAATGTCTTCGTGTTATTCGTTACCGCGCCC
GTTTTTCTGTCGTGCTAACAACTTGAATTTCATTTTTTTGTCTGTTCACA
TTCTGTTTTTGTTGTATCCGGACCTGTTTCAATGACTTTATCGTCGTCCC
GTTCGTGAGTGTGTTCTGCCCTACCATGCTCTACTGCATCATCACCTTAT
CGTTATGTTGATGTTAAACCTTACGCAACATGTCTTCCTTTTCCGTTTCC
CATTTTCCAGGGGCGTTCTGAAAGACAATGCCAAGATCCAGATCAACAAG
AAATCTTTCTGGCCTGTCATGATCAACCTCTCTCAGAAGGAGTACTTCCC
TCTGAAGATGTCTGGTGCTCAACTCGCCCTCTACGCGATCCAGTCCGGCG
AGTACGGACCGTGCTACTCGTGGATCTCCTCCACCAGCTCTCAGGGTATT
CCGGTGGAGAAGGCCGTCTCCTTCTGGCGTTGCTGGACAGCTCACGCCGA
AGTGCAGAAGCAAGACATCTACCACGTAAGCAATATTTCATGTTTTTGCT
ATTTTTTTCCCTTCCCCATTGATTATTTTGTTTGCCGTTTCTGGTCCTTT
GATAGTACGTACCTGCTCTTCTCTATCGTGTATATCGTTTTTTTTCGGTG
GAAACGTCAGCATCAGGTGTTTTGATCTTTGACGGGTTGTTTCCTTTATC
GTTGTAAAATAGTTTCAAGAGAGGCTCGTTCGTTCGTCTTGCGCCCGTTC
TCTCTAATTTTTCCTCGCCTTTTGTCCACGTCATACGTCTTATCCTCGTT
TCGTGACGCCCGTGCCAGGTCTTCTTCGACACACGCCCTACCTGTGGGTG
T
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:608032..609132+

>mRNA_E-siliculosus-1a_M_contig87.16771.1 ID=mRNA_E-siliculosus-1a_M_contig87.16771.1|Name=mRNA_E-siliculosus-1a_M_contig87.16771.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:608032..609132+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTGGATATGTCCAGAAAGATGAAGGTCGCTCTTGGTATCAGTTCGA
CAGTGTCGGGCTCACACAGGATTTCTGCAGGGTGGCCCTTGCGAACTACC
GCCGGAAAGCAGCATGACTGGATATGTCCAGAAAGATGAAGGTCGCTCTT
GGTATCAGTTCGACAGTGTCGGGCTCACACAGGATTTCTGCAGGGTGGCC
CTTGCGAACTACCGCCGGAAAGCAGCGGGCGTTCTGAAAGACAATGCCAA
GATCCAGATCAACAAGAAATCTTTCTGGCCTGTCATGATCAACCTCTCTC
AGAAGGAGTACTTCCCTCTGAAGATGTCTGGTGCTCAACTCGCCCTCTAC
GCGATCCAGTCCGGCGAGTACGGACCGTGCTACTCGTGGATCTCCTCCAC
CAGCTCTCAGGGTATTCCGGTGGAGAAGGCCGTCTCCTTCTGGCGTTGCT
GGACAGCTCACGCCGAAGTGCAGAAGCAAGACATCTACCACGGGCGTTCT
GAAAGACAATGCCAAGATCCAGATCAACAAGAAATCTTTCTGGCCTGTCA
TGATCAACCTCTCTCAGAAGGAGTACTTCCCTCTGAAGATGTCTGGTGCT
CAACTCGCCCTCTACGCGATCCAGTCCGGCGAGTACGGACCGTGCTACTC
GTGGATCTCCTCCACCAGCTCTCAGGGTATTCCGGTGGAGAAGGCCGTCT
CCTTCTGGCGTTGCTGGACAGCTCACGCCGAAGTGCAGAAGCAAGACATC
TACCACGTCTTCTTCGACACACGCCCTACCTGTGGGTGTGTCTTCTTCGA
CACACGCCCTACCTGTGGGTGT
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