mRNA_E-siliculosus-1a_M_contig87.16745.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16745.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16745.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16745.1 vs. uniprot
Match: D7FW37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW37_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 9.380e-50
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:  241 MVHDPTQQFGEAPVFVNPRRRGGINYAADSAEAMWAAEAAAQPCREDTRGRISVDQEAEVGAEMLRMMKMWSFNGGAEAHAGQEAPVGQR 510
            MVHDP QQFGEAPVFVNPRRRGGINYAADSAEA WAA AAAQPCREDTRGR+SVDQEAEVGAEMLRMMKMWSFNGGAEAHAGQEAPVGQR
Sbjct:    1 MVHDPMQQFGEAPVFVNPRRRGGINYAADSAEAKWAAGAAAQPCREDTRGRMSVDQEAEVGAEMLRMMKMWSFNGGAEAHAGQEAPVGQR 90
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW37_ECTSI9.380e-5095.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:430495..435251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size273
Model size2203
Exons3
Ec32 orthologEc-01_003230.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16745.1prot_E-siliculosus-1a_M_contig87.16745.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 432185..435011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936332.9902673-UTR-E-siliculosus-1a_M_contig87:430494..4321841622936332.9902673-UTR-E-siliculosus-1a_M_contig87:430494..432184Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 430495..432184 -
1696251030.204723-UTR-E-siliculosus-1a_M_contig87:430494..4321841696251030.204723-UTR-E-siliculosus-1a_M_contig87:430494..432184Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 430495..432184 -
1622936333.1048481-UTR-E-siliculosus-1a_M_contig87:435011..4352511622936333.1048481-UTR-E-siliculosus-1a_M_contig87:435011..435251Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 435012..435251 -
1696251030.2626874-UTR-E-siliculosus-1a_M_contig87:435011..4352511696251030.2626874-UTR-E-siliculosus-1a_M_contig87:435011..435251Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 435012..435251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936333.0484464-CDS-E-siliculosus-1a_M_contig87:432184..4322821622936333.0484464-CDS-E-siliculosus-1a_M_contig87:432184..432282Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 432185..432282 -
1696251030.224312-CDS-E-siliculosus-1a_M_contig87:432184..4322821696251030.224312-CDS-E-siliculosus-1a_M_contig87:432184..432282Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 432185..432282 -
1622936333.0671272-CDS-E-siliculosus-1a_M_contig87:432868..4330191622936333.0671272-CDS-E-siliculosus-1a_M_contig87:432868..433019Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 432869..433019 -
1696251030.2415164-CDS-E-siliculosus-1a_M_contig87:432868..4330191696251030.2415164-CDS-E-siliculosus-1a_M_contig87:432868..433019Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 432869..433019 -
1622936333.082196-CDS-E-siliculosus-1a_M_contig87:434987..4350111622936333.082196-CDS-E-siliculosus-1a_M_contig87:434987..435011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 434988..435011 -
1696251030.2524893-CDS-E-siliculosus-1a_M_contig87:434987..4350111696251030.2524893-CDS-E-siliculosus-1a_M_contig87:434987..435011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 434988..435011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16745.1

>prot_E-siliculosus-1a_M_contig87.16745.1 ID=prot_E-siliculosus-1a_M_contig87.16745.1|Name=mRNA_E-siliculosus-1a_M_contig87.16745.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=91bp
MVHDPTQQFGEAPVFVNPRRRGGINYAADSAEAMWAAEAAAQPCREDTRG
RISVDQEAEVGAEMLRMMKMWSFNGGAEAHAGQEAPVGQR*
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mRNA from alignment at E-siliculosus-1a_M_contig87:430495..435251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16745.1 ID=mRNA_E-siliculosus-1a_M_contig87.16745.1|Name=mRNA_E-siliculosus-1a_M_contig87.16745.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4757bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:430495..435251- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAACGGCGTACGGCGGTTCCGCATTCTTAAGTTCAGCACGCTCGCTCTA
TCACAAGGGCTGGGAAACCACCCACACAGCAGAGGAGCGCGCGTGGTGAC
CAGACTTGTTGGCCCCCCAAGACATCCGAGGAACTCGGGAATCGACGTTG
AAGACGCTCGGTGCACACGACTCGTTCTTGCTTACGAGAGACACAACTGG
TTCGACGATCTTGCTTTTTGGGCGGAGAGAAAGATCAATCATGGTCCACG
ATCCCACGCAGCAGGTATTGTAGGCGGGGGGGGATTTTATGCGACTGGCC
ACAGCGAGCATCAGCGTTGCTGGCCGTTAGAAGTCTGTGAGGCCAGATGA
TGTCGCTCGTTTGTCGTTATCATACCACGCTCTGTTTGTGTGGAGGGAGT
CCAGTCGGGAAAAGAAAGCGATGCGTAGCCGGGCAGGGAGGGGATTTCGT
AACCCAGCGGTGGGTTCTGTGGCTCTCCCGGCGAAAATAACTACACATTT
TGCTACATATTTTGCTTGGACTCCACAGCGGATCAGCGGCCCGACTGGTA
CGCTCGTGCGGGGGAAGGCGTAGCGCGGAGGTCTGTTGCTACTACATACG
TGACCGCACCTACCTTACGTGCCTTTTGTCGCTGTGCATTTTTTGTTTTG
CGTGCCGCTGACTGACGGGCTTTGCGTGACCCCGCGGGGTCTTTCGTGGT
ATACAGACGTACGGACTCAATTTTACGTTCCACGAACAAACCTGCAAACC
CAGATTATTCCTTGAAACTTTTCTTCTTGTTCGCTGGATTCTCTAAGTGT
AGGTAAGTGGAGGTAAGTGGCGGGCAATTGTTGCTTGGCTGCCCATCGTC
CTATCGTCCAAAATGAAGGGTTGCGATCTTACCCCGCCCCCACACAATGT
TGTGCGTAGTCATGACATCTACAAGTATACCTCTGCTGTGAAGTGCTGTG
GATATTTATTTTCAATGCTCAAGTCATCCCCATTCATGCAACAGGCATAC
AGCAGTAGGATGCCACTGGAGCCTTGGATCAACTTGTTCAGGGCCCTCCT
GGTGCAAATTTTTCAATTTTTCCAACGGGTGCAGCAGTATAGCCTAATGA
TGTATATTCACGAACTGCGGTTATAGACTGTAAGACCCAAAGGTAGAATA
ATCTACATGTATGATAGCGGCGTCACGGAGACTGAAAGAACCGAAGTCCC
CGCCCATGGGGTGCCCCAATAATTTGCCGAAAGACACACCCCGGGGCTAA
TAACTAGCAAGGTTTTTACAGTAGTTTTTTTTCATGTATCCAGAGAGGGG
CGAAAAGTAAAAAAACCCAGGGGCGGAAAGTCCCCGAGGGTGTTGTCTCT
TTCCTGCTGTGATGATGCACCTGCTGTACGACACAGCATAGTGCTGACTC
AACAGCAAAACAACCACAACGAATACGGCAACTGACGCATGCGTACACCC
ACGAGAACGCTGCCACAATGGAATGTCGTTCGTGGGTTCGTGTGCGGACG
TCGTCCCGTGGGACGGCCCAATAATTTGCCGGATAAGAACACTCCAGGGC
TCAACACTCCAGGTCTAACTCAAAGGTAGCGGGGCGAAAAAAAAAATAAG
GAAGAAGGGTGCCCCGGGGTGGCTGACCTCGGGGTGGTTAACTTCAAGTT
TTTGTGCGATTCCTAACGCGTCAAGTGTTGGATCAGTACGGACATATGGA
GGTACTGGGTAGATAGAGATCGGAACGGTTTTTAATGCGAAGACAACAAC
AACAACAACAACAACAACAACAACAACAACAACGACCAGGTGATATTTTT
TTCCGGGCGTTCTCAAAGGAAATTTCGGTATGCCTGGACGTTGACGAAAG
TGCGTATGCATAAAGACTTTCATGCGACATAGTACATAAGGACCGAAGTC
CACCACGTCCCTGCTTTTTAAACTAGCGACAAGGTTGTTTTTTTTTCTAC
TGCGGTGGACATGATGTTAATTATGCATAACAGACAGATATATGATCGGT
GGGTGATATCGTCACGACCGACCCAACCGCAACCTTCCGCTACAGCGCGA
CCATGCATGACGGACACACGCCGCCATTTCGGAGGGATCAGGCGTCCGCA
AGATTCCCTTCCTTTGTTGTGTTGGGCGCATGCCCCGTTTTCTCAATCGG
ACCCTTGGTGGTCACTTACACTACAATACATGTTTTCAAGCATCATCACC
GCTTTGTCGTGGTTCTCTTGTCGCTCGCGCAGTTTGGTGAGGCACCGGTA
TTCGTCAACCCGCGAAGAAGGGGCGGGATAAACTACGCGGCAGATTCAGC
GGAGGCCATGTGGGCGGCAGAGGCCGCGGCTCAGCCATGCCGGGAAGACA
CACGCGGACGGATAAGCGTCGATCAAGAAGCAGGTGCGTTTGAGATGCGG
CCACGAGGTAAAGCATCGCGGCGTACAGCAGTATGAACATGCATGGGCAG
CATGAACTTTTATTCATACATGACAGTAGGAACAACAACATGGCCAGTAC
TCCGTTAAAGGGAGGGGCAGGGGAAGGAGGTTTTCGACCGCGCGGTGTCA
GTCAAGCCGGTTCCGAGCTGCCTTTTGCGATTGCTCATGTTAGCGGACTG
ATTTTTGCAGCGCACGATTCACGAAGGAGGCGGCGGAATCTCTTGCGGGA
TAATTTAGGTCGTTCAGAGGCGGTGCTAGCTAGACCTGCAGGGGTGATAA
ATTTCCTCATGAAAGTGACGCAATGGGTTCTTTTTCACCGTATGTATCAG
TTTGACAACGGCGTGCACTTCGTGGACGTGGGTTGCGGCTGCGAGGAAAT
CAACATCCGTGAATCGTGTTTCGGTACTTGATCCAATGCGCTGCCGAGGC
TTAGCTCCGGTGTTCCTGAATAAACTCACCGTCCCCGCGTAGCCAAGGCT
CGTTCAATCTGATTTGGTCGCGCATCCGACCCTGTCCCCTCGCATTTTCT
CGATGGCTTGTTTTGCCAGAGGTGGGCGCGGAAATGCTGCGGATGATGAA
AATGTGGTCCTTCAATGGTGGTGCCGAAGCACACGCCGGGCAGGAGGCAC
CAGTGGGTCAACGCTGATGATGTCGTCGATACATGCTGGAGGCGGCCTGG
CCTGACTGGCTTCATTTAGCCGGGCTTACACACACAACGAACAATTTTTG
GATGCGAGCAGGTTTAGAAAAATTTAGCGGCGTGTCTGTATTCATGTGGT
CGAGGCGACACATTCCCCTTTCATACATGCTGCAATTTCCCCCCTCCATA
TGGTCTCCGACCCTGAGGCTAGAGTGAAGGCGCCGCGGTGGTTTGTTCGT
TTGTCTGCATGCCTGTGTTTTTTTTTGTGAGTGTGTGCGTGTGTCCAAGT
CCAGGTTGTCCTGTTGTTGCTTCACCTTTCATCTCTCCAGATGGAAGTAC
TGCACCCGAAGTCGCGCATGCCATCGGCGCATTTGTACCGCTTGCAGTGC
GTATTTTAGCTGAATTTTGTGTGTTTCCGGTGTTCCCCTTTGACCACTTT
GGGGTGTGTGTGCACGAACGAGAAGGCTTGACTCGCTGCCCTTGACTACG
AGGGACAAGGATGGTGTGTGCTTGTCGAGCGTTTCTGAACACCAGAGCTC
AACAAGAGAGTGAGTTGAGCGTGGGAGAGCTGTTGATAGGTGTAAATAAT
TACTGTGGTAGCTCTTGATCAGGCGGCGAGTTTTTGGTCATGGGCAGGTG
GGTGTATGTGGGTGGGCGGTGGTGACGTGGATCGATGTGTTGCAGAGTTA
CAGAGTGGCGCCGTGTGAGAGGGTATTATCGCCAATGAGGTGCTTTACCT
AAGTGGTAGCCTTGGTTGCGAACCTTGGCATGCACAGGCTCTTCCTGGCT
TGATCGATTCTATTTCATACTTGTACTTCGTATATATATTTTTTTTGTGA
GTAAGGACGTGGGGAAGAAGGGCATCGTTGGAGGGGGCGCTTTTCTTATG
GCTAGCGGCAATCACATCGCCTGGCGATATTACACGCTTGGACCTGCAAA
CAGTGCAAGTAGAGTGTGGGGAGTGTCATATCTAAGCGTTCTCCATGGCT
GGCTCGAAAGCTCCTGGCTTCGGCCGGGTCCTCCACTTCGCCAGTTTTTT
CTATTTATTGTACAAGAGGGGGCTTATTGTTCGATGATGATGTGCGTCTG
AGTCGTCCCGGGGTGTCACCTGTCGCCGTTGGGGGGGAAGTCATCTCGTT
TTATTCATCGTGTGCCTCGCTGGCTGCAAATAACATGTTTCTTTGTTGCG
AATGTCTATATGGGTTCGCACGCCTTCCACCGGCCAAGGAGGTGCGACCC
TCTGTGGTGTTTTCGTGGACGGGAGGACGAGAGGCGAGAAGGTAGTAGCC
TAAGCAGTAAACGGAAATCGCGTGGTTTGTGTTGCACCGGGCACCCCGGT
GACGATGTATTTGGTCGCCCGGAACCCCTTCTAGCGGCCCGGTCGAGAGT
GCGAGTGTCTGGGAATGATTGTACGGCGATATATGTATGCTTCGGAGAAC
GGACAGAACTATCCCTGTGTTGAAAGATTAGGGCACGCGGGGGTTGTGTG
TGTGACCGACCGCGTGCCGGACTTGTACAGCAGTTGGGAGAAGCAACAGC
GTACGGCACAATGGCTAGAAACTACGAGTAGCGGTTGGCAAAGAAACTGC
GTGTAGCGGTTGGCAACCGGGATGATGAGACTGGGTGCATGTTCTTGTCG
CCCTGAGATGAGAGTGTGCACAAGTCATCCCAAAAAAGGCATTTTATTGA
CACAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:430495..435251-

>mRNA_E-siliculosus-1a_M_contig87.16745.1 ID=mRNA_E-siliculosus-1a_M_contig87.16745.1|Name=mRNA_E-siliculosus-1a_M_contig87.16745.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:430495..435251- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCCACGATCCCACGCAGCAGATGGTCCACGATCCCACGCAGCAGTT
TGGTGAGGCACCGGTATTCGTCAACCCGCGAAGAAGGGGCGGGATAAACT
ACGCGGCAGATTCAGCGGAGGCCATGTGGGCGGCAGAGGCCGCGGCTCAG
CCATGCCGGGAAGACACACGCGGACGGATAAGCGTCGATCAAGAAGCAGT
TTGGTGAGGCACCGGTATTCGTCAACCCGCGAAGAAGGGGCGGGATAAAC
TACGCGGCAGATTCAGCGGAGGCCATGTGGGCGGCAGAGGCCGCGGCTCA
GCCATGCCGGGAAGACACACGCGGACGGATAAGCGTCGATCAAGAAGCAG
AGGTGGGCGCGGAAATGCTGCGGATGATGAAAATGTGGTCCTTCAATGGT
GGTGCCGAAGCACACGCCGGGCAGGAGGCACCAGTGGGTCAACGCTGAAG
GTGGGCGCGGAAATGCTGCGGATGATGAAAATGTGGTCCTTCAATGGTGG
TGCCGAAGCACACGCCGGGCAGGAGGCACCAGTGGGTCAACGCTGA
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