mRNA_E-siliculosus-1a_M_contig87.16740.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16740.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16740.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16740.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-6
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = -2 
Query:    3 VLTDVKEMWTEQPKTGKGQKKAKAV 77
            VLTDVKEMWTEQPKTGKGQKKAKAV
Sbjct:   34 VLTDVKEMWTEQPKTGKGQKKAKAV 58
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW42_ECTSI1.800e-6100.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:388024..388500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size477
Model size479
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.7142088-CDS-E-siliculosus-1a_M_contig87:388023..3885001622936321.7142088-CDS-E-siliculosus-1a_M_contig87:388023..388500Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 388024..388500 +
1696251024.6644912-CDS-E-siliculosus-1a_M_contig87:388023..3885001696251024.6644912-CDS-E-siliculosus-1a_M_contig87:388023..388500Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 388024..388500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16740.1prot_E-siliculosus-1a_M_contig87.16740.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 388024..388500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16740.1

>prot_E-siliculosus-1a_M_contig87.16740.1 ID=prot_E-siliculosus-1a_M_contig87.16740.1|Name=mRNA_E-siliculosus-1a_M_contig87.16740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=159bp
FTAFAFFCPFPVLGCSVHISFTSVNTLPKKDGQVTQERDPAGVRHCAFVL
RCVPQYMARRMQPSLPSLAVTSNFECPPRRRSRFDEHHARNQIRTERFEL
SSQRKKVARTPCQTEPRSSDWCPKINCLFDNAGMVVHLPKPSSSVELAHT
CCNADRKP*
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mRNA from alignment at E-siliculosus-1a_M_contig87:388024..388500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16740.1 ID=mRNA_E-siliculosus-1a_M_contig87.16740.1|Name=mRNA_E-siliculosus-1a_M_contig87.16740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=477bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:388024..388500+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTTACCGCCTTCGCCTTCTTCTGCCCCTTCCCCGTCTTGGGCTGCTCTGT
CCACATCTCCTTCACGTCGGTCAACACCCTGCCGAAAAAAGACGGGCAGG
TCACACAGGAGCGAGATCCGGCAGGGGTCCGTCATTGTGCATTCGTTCTT
CGGTGCGTGCCTCAATACATGGCGAGAAGGATGCAGCCATCCCTCCCCTC
GTTGGCCGTCACGTCTAATTTCGAGTGTCCACCAAGACGCCGTTCCCGCT
TCGATGAGCATCATGCCAGAAATCAAATCCGCACAGAAAGATTCGAACTA
TCATCCCAACGCAAGAAGGTAGCAAGGACGCCATGTCAAACTGAACCCCG
TTCGAGCGACTGGTGTCCGAAAATCAACTGCCTTTTTGACAACGCAGGCA
TGGTAGTGCATCTTCCGAAACCAAGCTCGAGCGTTGAACTCGCACACACA
TGTTGCAATGCCGATCGAAAGCCTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:388024..388500+

>mRNA_E-siliculosus-1a_M_contig87.16740.1 ID=mRNA_E-siliculosus-1a_M_contig87.16740.1|Name=mRNA_E-siliculosus-1a_M_contig87.16740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=954bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:388024..388500+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTTACCGCCTTCGCCTTCTTCTGCCCCTTCCCCGTCTTGGGCTGCTCTGT
CCACATCTCCTTCACGTCGGTCAACACCCTGCCGAAAAAAGACGGGCAGG
TCACACAGGAGCGAGATCCGGCAGGGGTCCGTCATTGTGCATTCGTTCTT
CGGTGCGTGCCTCAATACATGGCGAGAAGGATGCAGCCATCCCTCCCCTC
GTTGGCCGTCACGTCTAATTTCGAGTGTCCACCAAGACGCCGTTCCCGCT
TCGATGAGCATCATGCCAGAAATCAAATCCGCACAGAAAGATTCGAACTA
TCATCCCAACGCAAGAAGGTAGCAAGGACGCCATGTCAAACTGAACCCCG
TTCGAGCGACTGGTGTCCGAAAATCAACTGCCTTTTTGACAACGCAGGCA
TGGTAGTGCATCTTCCGAAACCAAGCTCGAGCGTTGAACTCGCACACACA
TGTTGCAATGCCGATCGAAAGCCTTGATTTACCGCCTTCGCCTTCTTCTG
CCCCTTCCCCGTCTTGGGCTGCTCTGTCCACATCTCCTTCACGTCGGTCA
ACACCCTGCCGAAAAAAGACGGGCAGGTCACACAGGAGCGAGATCCGGCA
GGGGTCCGTCATTGTGCATTCGTTCTTCGGTGCGTGCCTCAATACATGGC
GAGAAGGATGCAGCCATCCCTCCCCTCGTTGGCCGTCACGTCTAATTTCG
AGTGTCCACCAAGACGCCGTTCCCGCTTCGATGAGCATCATGCCAGAAAT
CAAATCCGCACAGAAAGATTCGAACTATCATCCCAACGCAAGAAGGTAGC
AAGGACGCCATGTCAAACTGAACCCCGTTCGAGCGACTGGTGTCCGAAAA
TCAACTGCCTTTTTGACAACGCAGGCATGGTAGTGCATCTTCCGAAACCA
AGCTCGAGCGTTGAACTCGCACACACATGTTGCAATGCCGATCGAAAGCC
TTGA
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