mRNA_E-siliculosus-1a_M_contig87.16717.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16717.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16717.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A6H5JQD1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQD1_9PHAE)

HSP 1 Score: 737 bits (1902), Expect = 4.940e-267
Identity = 390/409 (95.35%), Postives = 394/409 (96.33%), Query Frame = 1
Query:    1 MTLSAHRRYGVGIALWLMVLMIAMSLVSMESTDDTIMVRRRRKERGSPFDLSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDLDVEALRSKPFAERLAELQELWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEFHKELTQKLEECAVALR 1227
            M LSAHRRYGVGIALWLMVLMIAMS VSMESTDDTIM         SPFDLSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDLD EALRSKP AERLAELQ LWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMA+DFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEP+HQLWVLEDGP SQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVR+KTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEE+HKELTQKLEECAVALR
Sbjct:    1 MRLSAHRRYGVGIALWLMVLMIAMSSVSMESTDDTIM--------WSPFDLSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDLDAEALRSKPLAERLAELQGLWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMARDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPEHQLWVLEDGPDSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRIKTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEYHKELTQKLEECAVALR 401          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A835Z7K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.160e-34
Identity = 123/403 (30.52%), Postives = 174/403 (43.18%), Query Frame = 1
Query:  124 RKERGSPFDLST---EALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDLDVEALRSKPFAERLAELQELWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVSQP---------------------------------------------------------SVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMG-----EAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAAR--GSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAA---LEKAIEAVQSFTPSCRDQFAQLDTKRRLEGL 1122
            +K  G   DL+        SI  +DDHP++D   AR  RML AL  +P  E++ M LD  A+ +   +ER   LQ LWE RQ EL+E Y  MP   ++L   I IL +  + D  L  AL DLED LSD+DMA+DFHT+GG+  L ++L   R   VRE AAW +GTAVKN  +   W LE GP +                                                           + +  LLE    A    L+ K +YAL++ L +N   Q  F +  G      A  +A  D   + R +  K +TL+SD++ + A   GS    +A             WC  +   L  A +      LE+A++A     P C  + A +  + RL  +
Sbjct:   79 KKAAGLNIDLAALEKRTADSIRGIDDHPVQDTPEARTQRMLEALLELPREEQERMQLD--AILALDPSERPPALQALWERRQAELKEIYAGMPTPAKILGSLIAILRSEASGDAVLLDALLDLEDHLSDVDMARDFHTLGGWHPLQALLHAERAPAVREHAAWVIGTAVKNVIEFHGWALETGPAAAADASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVAGAGDGLNAIDRLLECVADARHAGLQGKALYALASALRHNARAQAHFVTTGGLDALRNAAATAADDGGAAARGLLTKAITLVSDIVADEAHEEGSGGGAVAAGVARDER-----WCVLLHALLLRADAARGGTQLERALDAALVLAPLCGARPAGVALEARLAAM 474          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7R9U9J5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9J5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.680e-26
Identity = 85/247 (34.41%), Postives = 129/247 (52.23%), Query Frame = 1
Query:  343 LWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLE-----DGPVSQPSVLALLLENA-MAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGA----WCRRVDEALQHAHSPAALEKAIEAV 1053
            +W+ RQQ+LREA ++M     + +ERI +L+ AD+++  +   L  LED L DIDMA+DFHT+GG+P L  +L  S  E VR  AA  VG  V+N P+ Q WV E        V + +++ LL+     +A+T   +SK + ALS  L N+ +    F    G A L A+ D D  + R+ ++ + ++SDL  EAA      +   +        GG     WCRR ++    A      ++  EAV
Sbjct:  137 IWQKRQQDLREAIESMGSHVNIFLERIMVLSAADSSEEDVMKVLLQLEDDLMDIDMARDFHTVGGWPALTGLLADSHAEDVRCQAALVVGNTVRNTPEFQAWVSEVPMGSAADVEEATMMHLLVSMMNSSASTAKEQSKALSALSGALYNHVENLQLFADLDGSAKLLALLD-DAVEDRLSLRAIRIVSDLAFEAAESGDEELKGLL--------GGIFDARWCRRTEDLASAAKGAGTDDRLSEAV 374          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: W7TQS8_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQS8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.330e-18
Identity = 118/388 (30.41%), Postives = 158/388 (40.72%), Query Frame = 1
Query:  217 ARADRMLAALESIPEGERQGMDLDVEALRSKPFA-ERLAE-----------------LQELWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRP-EGVREL---AAWAVGTAVKNEPDHQLWVLEDGPVSQPSVLALLLENAMAATTPT---------LRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAM------------YDADGSDRRVRMKTLTLMSDLLQEAARGSPAAVLAT---------------MPVGSTASSGGAWCRRVDEALQHA------HSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEFHKE 1188
            +R   ML  L  +P  ER  M +D   L S+P A E L E                 ++ LW  RQ  L +AY+ M K  E L   I +L      +  +  AL +LED LSD+DMA+DF+T+GG+P L S L      EG RE+   AAW VG AVKN+   Q WVLE G     S L  LL       T           L  K VYA+++    N  VQ +     G  VL  +            +   G  R + +K +    DL  EA +   AA+                  +  G T+    AWC  +   L+            ALE  +EA+Q     C  Q    +  R +E L ++ R       EV EEE  KE
Sbjct:  174 SRRGTMLKVLSGLPPQERASMGID-SLLASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLKPAEELGRLIGVLKEGGEEE--VMRALMELEDWLSDVDMAQDFYTLGGWPLLVSKLGWEGGREGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALTRLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPAVQAKLVEEGGLEVLGHLLHSSVPPSPGSSHQRKGQRRALCLKLIAFAQDLALEAKQAVAAALEVAEARHPPSIXXXXXXXLLAGVTSP---AWCEGILGLLEEVVGGEGGREARALEGVLEAMQLLHVDCVRQGRWEEGGREVERLLRRAR-------EVVEEEDWKE 548          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S3M316_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M316_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.260e-16
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  439 ADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLE-------DGPVSQPSVLALLLE---------NAMAATTPTLRSKVVYALSACLTNNGDVQ 789
            AD T       L  LE LL D+D A+DFHTIGG+PTL S L+ S+P  VR +AA AVGTA+KN  D+QLW LE       D      S L LL+E           +A+    L+ + +YALSA +  N DVQ
Sbjct:  204 ADLTTDDKVYLLRQLESLLDDVDNARDFHTIGGWPTLLSHLKASQPLQVRSVAALAVGTAIKNTYDYQLWTLESPASSTTDSGALVVSGLDLLIEALGTSENTAEEIASDRFELQKRALYALSAAMRGNMDVQ 336          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S2RJU1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJU1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.080e-16
Identity = 68/206 (33.01%), Postives = 105/206 (50.97%), Query Frame = 1
Query:  334 LQELWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHT-IGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVS-----QPSVLAL-----LLENAMAATTPTLRSKVVYALSACLTNNGDVQLQF----GSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLLQE 906
            L+ LWE RQ+EL+ A +AM +  + L   I  + + D  + ++  AL DLE+ LSD+DMA+D H  +GG+P L  +L   +   +R  AA  +GTA+KNEP  Q W+LE    S     Q +  AL     +LE         +  + +YAL++ L +N   Q  F    G    +A+L    D    +  +  K   L+ D+L+E
Sbjct:  121 LKVLWEQRQEELKAAMEAMQEAADTLSSIIRQIRSGD--EESVEAALADLEEHLSDVDMARDLHNALGGWPPLVRLLSSDQSPRIRAGAALVIGTAIKNEPVFQSWILESAAESVDVNPQQNETALSSLLGMLEEQGTGDVQVMHRRSMYALASALRHNLRNQAAFMELGGLERLQALLVKSCDGGLENPALVSKLAALVFDVLEE 324          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S0J9D3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J9D3_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 3.400e-15
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  469 ALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAA 912
            AL  L++L+ D+D A+DF TIGGF  +  +L    PE V    AW VGTAV+N+ + QL +LE        ++A LL+     +   +R+KV+YA+S  L N  + QL F  R G +VL      D S R +R K L L++DLL E+A
Sbjct:  171 ALFALQELVEDLDNARDFMTIGGFKQVMELLGSDTPELVAA-TAWVVGTAVQNQRELQLHMLEL------ELMAPLLQLLHDHSAIDVRAKVLYAVSGLLRNCPEAQLDFRRRQGVSVLVMTLARDSSPRLMR-KALVLLTDLLSESA 310          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S2FHY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHY2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.470e-15
Identity = 87/290 (30.00%), Postives = 132/290 (45.52%), Query Frame = 1
Query:  232 MLAALESIPEGERQGMDLDVEALRSKPFAERL--AELQELWEVRQQELREAYDAMPKVNELLMERIDIL----NNADATDGALTGALTDLEDLLSDIDMAKDFH-TIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVS------------QPSVLALLLENAMAATT-------------------PTL-----------RSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADG----SDR-----------RVRMKTLTLMSDLLQEA 909
            M+  L ++P  E+  +       +SK   E    A+L+ LWEVRQ EL EA  A  +  + L   I  L    ++  A D  +  AL  LED LSD+DMA+DFH  +GG+P+L ++L  ++   VR  AA  +GTAVKN+ + Q W+LE   +S            + + LALL    +   T                   PTL           R K +YA+++ +  N   Q  F S  G + L    DA+     SD+           ++R+K  T+++D + EA
Sbjct:   52 MIRTLSALPVVEQDRIGFTALMDKSKASGEEALEADLRSLWEVRQVELEEAMAATEESADFLAALIKTLKSHVDSNSADDETVLDALNGLEDHLSDMDMARDFHDALGGWPSLTNLLLPTQSLQVRAAAALVMGTAVKNQDEFQGWILEPVALSLSTDTTSEEHMHEEAALALLTHMLVKGCTXXXXXXXXGTTTSVTLCNEPTLEESDPVGALAMRKKALYAIASGIRQNPHTQSLFLSLDGLSRLEHAADAEAEFAASDKHKKRPDHSSLWQLRLKLATMLADWITEA 341          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S0LLH1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLH1_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 2.730e-14
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  469 ALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLEDGPVSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAA 912
            AL  L++L+ D+D AKDF  IGGF  +  +L    P  V  +A W VGTAV+N+ + QL +LE        ++A LL+   A T   +R+K +YALS  L N  + QLQF    G  VL     AD S  R+  K L L++DLL E A
Sbjct:  173 ALLALQELVEDLDNAKDFMAIGGFKQVMELLGSETPALVAGVA-WIVGTAVQNQRELQLQMLEL------HLMAPLLQLLHAHTAAEVRTKALYALSGLLRNCAEAQLQFKQGEGVGVLLRTL-ADVSSPRLVRKALVLLTDLLAERA 312          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Match: A0A7S1UMA0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMA0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.910e-14
Identity = 65/213 (30.52%), Postives = 105/213 (49.30%), Query Frame = 1
Query:  340 ELWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPDHQLWVLED------------GPVSQPSVLALLLENAM---AATTPTLRSKVVYALSACLTN---NGDVQLQFGSRMG-EAVLSAMYDADGSDRRVRMKTLTLMSDLLQEAARGS 921
            E+W  RQ +L+ A +++   + +    + +L +  A+   L   L  + + L D+D+A DFH++GG+P +A++L    PEGVR  AA  +  +V+N P+ Q WV  D            G      V AL L   M   +++TP  + K ++ALSA L N   N D  L  G      AVL+    A   D ++  + + + +DL  EAA  +
Sbjct:  202 EVWRKRQVDLKAAMESVADTHSIFTGYLGVLQDPAASAEELVAMLDVVAEQLMDVDLANDFHSMGGWPIVAALLAEEHPEGVRAAAAAVIADSVRNVPEFQGWVGVDKLGRLEVVGDDAGGDGSGEVTALDLLTDMFSSSSSTPKEQQKALFALSAALYNHPANLDKFLDLGGAAKLSAVLAPPEGAPKQDSKLIQRAINIAADLAFEAAESA 414          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD1_9PHAE4.940e-26795.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7K3_9STRA2.160e-3430.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U9J5_9STRA4.680e-2634.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TQS8_9STRA1.330e-1830.41Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S3M316_9STRA8.260e-1644.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2RJU1_9STRA9.080e-1633.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0J9D3_9EUKA3.400e-1540.54Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2FHY2_9STRA5.470e-1530.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0LLH1_9EUKA2.730e-1441.22Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1UMA0_9STRA3.910e-1430.52Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:114299..117102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1230
Model size1298
Exons3
Ec32 orthologEc-01_003620.1
Ec32 ortholog descriptionArmadillo-type fold
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko03021,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0197@1,KOG2160@2759
EggNOG free text desc.adenyl-nucleotide exchange factor activity
KEGG Pathwayko04141,map04141
KEGG koko:K14001,ko:K15196
Seed eggNOG ortholog2880.D7FW70
Seed ortholog evalue2.4e-199
Seed ortholog score701.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16717.1prot_E-siliculosus-1a_M_contig87.16717.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 114367..117102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936325.3397515-UTR-E-siliculosus-1a_M_contig87:114298..1143661622936325.3397515-UTR-E-siliculosus-1a_M_contig87:114298..114366Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 114299..114366 -
1696251026.227587-UTR-E-siliculosus-1a_M_contig87:114298..1143661696251026.227587-UTR-E-siliculosus-1a_M_contig87:114298..114366Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 114299..114366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936325.3540664-CDS-E-siliculosus-1a_M_contig87:114366..1149391622936325.3540664-CDS-E-siliculosus-1a_M_contig87:114366..114939Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 114367..114939 -
1696251026.2385383-CDS-E-siliculosus-1a_M_contig87:114366..1149391696251026.2385383-CDS-E-siliculosus-1a_M_contig87:114366..114939Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 114367..114939 -
1622936325.367851-CDS-E-siliculosus-1a_M_contig87:116208..1167301622936325.367851-CDS-E-siliculosus-1a_M_contig87:116208..116730Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 116209..116730 -
1696251026.2478888-CDS-E-siliculosus-1a_M_contig87:116208..1167301696251026.2478888-CDS-E-siliculosus-1a_M_contig87:116208..116730Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 116209..116730 -
1622936325.3816173-CDS-E-siliculosus-1a_M_contig87:116967..1171021622936325.3816173-CDS-E-siliculosus-1a_M_contig87:116967..117102Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 116968..117102 -
1696251026.2573235-CDS-E-siliculosus-1a_M_contig87:116967..1171021696251026.2573235-CDS-E-siliculosus-1a_M_contig87:116967..117102Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 116968..117102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16717.1

>prot_E-siliculosus-1a_M_contig87.16717.1 ID=prot_E-siliculosus-1a_M_contig87.16717.1|Name=mRNA_E-siliculosus-1a_M_contig87.16717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=410bp
MTLSAHRRYGVGIALWLMVLMIAMSLVSMESTDDTIMVRRRRKERGSPFD
LSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDLDVEAL
RSKPFAERLAELQELWEVRQQELREAYDAMPKVNELLMERIDILNNADAT
DGALTGALTDLEDLLSDIDMAKDFHTIGGFPTLASMLRCSRPEGVRELAA
WAVGTAVKNEPDHQLWVLEDGPVSQPSVLALLLENAMAATTPTLRSKVVY
ALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRMKTLTLMSDLL
QEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEA
VQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEFHKELTQK
LEECAVALR*
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mRNA from alignment at E-siliculosus-1a_M_contig87:114299..117102-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16717.1 ID=mRNA_E-siliculosus-1a_M_contig87.16717.1|Name=mRNA_E-siliculosus-1a_M_contig87.16717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2804bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:114299..117102- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACACTTTCAGCCCACCGAAGATATGGAGTTGGCATCGCTCTGTGGTT GATGGTGCTGATGATTGCCATGAGCTTAGTCTCCATGGAAAGCACTGATG ATACGATCATGGTGAGAAGGCGGAGGAAAGAAAGAGTGGAGACTAATCAG AACAGGGGCGGGGTAGCAACAACCATCGCTAAGCCAACTGCATCATTTCG GTCACCTTCTATTTTGTCAGCAACATACCGCAGTGCCGATTGGCGTCAAA TACACTGCTGCAGCAGTATCGTTTGTAGAGTAATCTCCGTATTTACGTGC CTCGTGGGTCCTTGTCTGCCGACAAACCAACTCGTCGTCCTTTGCTTGTC CGTCATGTCTTACGATGCACAGGGGAGCCCTTTCGACCTCAGCACGGAGG CCTTGGCGTCTATCGCCGATCTAGATGACCATCCCATCGAAGACAACGAT GCTGCTCGAGCTGACCGCATGCTCGCGGCCCTGGAGTCAATCCCTGAGGG CGAGCGACAAGGCATGGACCTAGACGTGGAAGCTTTGCGCTCGAAGCCCT TTGCGGAGCGGTTGGCCGAGTTACAGGAGCTATGGGAAGTACGGCAGCAG GAACTCCGCGAGGCTTACGACGCGATGCCTAAGGTGAACGAATTACTGAT GGAACGGATCGACATCCTGAACAACGCCGACGCAACGGACGGCGCCCTGA CTGGCGCTCTCACCGACCTGGAGGACCTGCTGTCGGATATCGACATGGCC AAAGATTTCCATACTATCGGAGGATTCCCCACGCTGGCTTCCATGCTCCG CTGTTCGCGACCAGAAGGTGTTCGTGAACTAGCAGCCTGGGCAGTCGGCA CTGCGGTGAAAAATGAGCCTGACCATCAACTGTGGGTGTTAGAGGTGAGC ACAAACACCAAGAGCAGCCATCGGAGTATCAGGTTGGCAAGTCGCGGCAC GAAGGCGTCGCCACTCGTGTTGGAATGAAACAGTAGTCCTCCACTTTGGA GCGGGGCGATACTGTTGGTAGAAGCGCAGTTCGGAGCATTTTTTGTATTC ACGAGATCATTACGATGACACATTCCGTACTGAGTCTTGGCAGCGTTCAC TATCGCGACAGATCTCGCACCAGTGCAGTTCCTCTCCAACGATTCCGACA TCGTACAAGGTTGTACACACACGGTTTCCACGGCGGTTCTGTCTTTATAC GTGAGGATCCTGACACGATGGCTGCCGTCTTCTGTCGTTTAGTACCATAG TTGGGGCTGACTGGTAAAAAGAATCTCAGTCACTGGGGCTCGTTCATCTT CGAATGTCCTCCACAAAATAAGAAATTGTCAAATTCGTCAAGAAAGTACA ATCAAGGTAGACAAAAACACACACACTTTTCACGCATACATACAGCAGAC AATGTATCTGCTTATCAACTGCCGCCCTTTTGGTTGGTTGTATACATATA TACGTGGTGTGCCCGGGTCTAAAACTGCTGCACTTTGCGGAACATGATTG ACTGCGGGAGGGGCCACATCTTTGCGGTTCCAATGACTTGTAGTTAGTTG TGAAGCTTACCATTAGTTCCATCGACGGTCGATCTTCCGAATGAACGCAT TCAACACCAAACCAAGATTTAATGACACATATCAGCGAGAGGCAACGGAC AAAATTCAACGTATCAAGTTCCGAGTGATTCCGCGTGTTTCGGTTGACTT GGAAGCAAGTCACAACATGACGTGCACAGATGCTATGATGGGTCATCTGG AAGAACAGACGAACGGATCCATCCAAGATAGCAGCCCGATTTCGTTTTGG AGCAGATTCGAACGTGCGCAGTGTGACCGGGGGTTGTCCTTACGCGCGCT GCGCAAATACGTTATATTTTCCCTCGAATCTCTATCCGGACAGATCGCTT TGCTGTCGTTGTCCTTGTCTTCCAAGCGACAAACCGTCTCGACCTCCTTG TAATACCGCCGTGTGGTCGAACGCTACCCCACAAAAGCACAGAAACAAAT GTGAAGACCCAGATAGAATGCTAACCACTCCCGAATCTGACAAAAAAACA TCCTAAATACAGGATCGATGTGTGTGTGACGTGTGACGTGTGACGTGTGA GAGAGCCAACACATATTTCTCGCCCTGCCATCTTGTCTGCGTACGCTGCT GCATAACAAACAGGACGGTCCTGTTTCCCAACCCTCGGTGCTGGCTCTTC TGCTGGAAAACGCTATGGCCGCCACGACCCCGACTCTGAGAAGCAAAGTT GTCTATGCACTTTCAGCGTGCTTGACAAATAATGGTGATGTACAGCTTCA GTTCGGCTCGCGAATGGGAGAGGCCGTGCTTTCAGCGATGTACGATGCCG ATGGATCAGATCGCCGTGTGAGAATGAAGACCCTCACCCTCATGTCAGAT TTGCTTCAAGAGGCTGCGAGAGGCTCGCCGGCAGCTGTTCTAGCCACGAT GCCTGTTGGCTCCACGGCTTCGTCGGGCGGGGCCTGGTGTCGCCGAGTAG ATGAAGCGCTGCAGCATGCACATTCTCCAGCTGCGCTGGAAAAGGCGATC GAAGCTGTTCAGTCTTTTACACCCTCGTGCAGGGATCAATTTGCACAGCT CGACACGAAGCGACGATTAGAAGGCCTAGCCCAGCAATGCCGTACATCGC CTCCGGAGGGGTTCGAGGTAGCAGAGGAAGAATTTCACAAGGAATTGACC CAGAAATTGGAAGAATGTGCTGTCGCTCTTCGATGAGCAGAGTAGTGTGG CATGTAGCGGCATTTTCTCGACGAGCTTGTAGGCGTTATGAGCGACTCCC GCTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:114299..117102-

>mRNA_E-siliculosus-1a_M_contig87.16717.1 ID=mRNA_E-siliculosus-1a_M_contig87.16717.1|Name=mRNA_E-siliculosus-1a_M_contig87.16717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2460bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:114299..117102- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACACTTTCAGCCCACCGAAGATATGGAGTTGGCATCGCTCTGTGGTT
GATGGTGCTGATGATTGCCATGAGCTTAGTCTCCATGGAAAGCACTGATG
ATACGATCATGGTGAGAAGGCGGAGGAAAGAAAGAATGACACTTTCAGCC
CACCGAAGATATGGAGTTGGCATCGCTCTGTGGTTGATGGTGCTGATGAT
TGCCATGAGCTTAGTCTCCATGGAAAGCACTGATGATACGATCATGGTGA
GAAGGCGGAGGAAAGAAAGAGGGAGCCCTTTCGACCTCAGCACGGAGGCC
TTGGCGTCTATCGCCGATCTAGATGACCATCCCATCGAAGACAACGATGC
TGCTCGAGCTGACCGCATGCTCGCGGCCCTGGAGTCAATCCCTGAGGGCG
AGCGACAAGGCATGGACCTAGACGTGGAAGCTTTGCGCTCGAAGCCCTTT
GCGGAGCGGTTGGCCGAGTTACAGGAGCTATGGGAAGTACGGCAGCAGGA
ACTCCGCGAGGCTTACGACGCGATGCCTAAGGTGAACGAATTACTGATGG
AACGGATCGACATCCTGAACAACGCCGACGCAACGGACGGCGCCCTGACT
GGCGCTCTCACCGACCTGGAGGACCTGCTGTCGGATATCGACATGGCCAA
AGATTTCCATACTATCGGAGGATTCCCCACGCTGGCTTCCATGCTCCGCT
GTTCGCGACCAGAAGGTGTTCGTGAACTAGCAGCCTGGGCAGTCGGCACT
GCGGTGAAAAATGAGCCTGACCATCAACTGTGGGTGTTAGAGGGGAGCCC
TTTCGACCTCAGCACGGAGGCCTTGGCGTCTATCGCCGATCTAGATGACC
ATCCCATCGAAGACAACGATGCTGCTCGAGCTGACCGCATGCTCGCGGCC
CTGGAGTCAATCCCTGAGGGCGAGCGACAAGGCATGGACCTAGACGTGGA
AGCTTTGCGCTCGAAGCCCTTTGCGGAGCGGTTGGCCGAGTTACAGGAGC
TATGGGAAGTACGGCAGCAGGAACTCCGCGAGGCTTACGACGCGATGCCT
AAGGTGAACGAATTACTGATGGAACGGATCGACATCCTGAACAACGCCGA
CGCAACGGACGGCGCCCTGACTGGCGCTCTCACCGACCTGGAGGACCTGC
TGTCGGATATCGACATGGCCAAAGATTTCCATACTATCGGAGGATTCCCC
ACGCTGGCTTCCATGCTCCGCTGTTCGCGACCAGAAGGTGTTCGTGAACT
AGCAGCCTGGGCAGTCGGCACTGCGGTGAAAAATGAGCCTGACCATCAAC
TGTGGGTGTTAGAGGACGGTCCTGTTTCCCAACCCTCGGTGCTGGCTCTT
CTGCTGGAAAACGCTATGGCCGCCACGACCCCGACTCTGAGAAGCAAAGT
TGTCTATGCACTTTCAGCGTGCTTGACAAATAATGGTGATGTACAGCTTC
AGTTCGGCTCGCGAATGGGAGAGGCCGTGCTTTCAGCGATGTACGATGCC
GATGGATCAGATCGCCGTGTGAGAATGAAGACCCTCACCCTCATGTCAGA
TTTGCTTCAAGAGGCTGCGAGAGGCTCGCCGGCAGCTGTTCTAGCCACGA
TGCCTGTTGGCTCCACGGCTTCGTCGGGCGGGGCCTGGTGTCGCCGAGTA
GATGAAGCGCTGCAGCATGCACATTCTCCAGCTGCGCTGGAAAAGGCGAT
CGAAGCTGTTCAGTCTTTTACACCCTCGTGCAGGGATCAATTTGCACAGC
TCGACACGAAGCGACGATTAGAAGGCCTAGCCCAGCAATGCCGTACATCG
CCTCCGGAGGGGTTCGAGGTAGCAGAGGAAGAATTTCACAAGGAATTGAC
CCAGAAATTGGAAGAATGTGCTGTCGCTCTTCGATGAGACGGTCCTGTTT
CCCAACCCTCGGTGCTGGCTCTTCTGCTGGAAAACGCTATGGCCGCCACG
ACCCCGACTCTGAGAAGCAAAGTTGTCTATGCACTTTCAGCGTGCTTGAC
AAATAATGGTGATGTACAGCTTCAGTTCGGCTCGCGAATGGGAGAGGCCG
TGCTTTCAGCGATGTACGATGCCGATGGATCAGATCGCCGTGTGAGAATG
AAGACCCTCACCCTCATGTCAGATTTGCTTCAAGAGGCTGCGAGAGGCTC
GCCGGCAGCTGTTCTAGCCACGATGCCTGTTGGCTCCACGGCTTCGTCGG
GCGGGGCCTGGTGTCGCCGAGTAGATGAAGCGCTGCAGCATGCACATTCT
CCAGCTGCGCTGGAAAAGGCGATCGAAGCTGTTCAGTCTTTTACACCCTC
GTGCAGGGATCAATTTGCACAGCTCGACACGAAGCGACGATTAGAAGGCC
TAGCCCAGCAATGCCGTACATCGCCTCCGGAGGGGTTCGAGGTAGCAGAG
GAAGAATTTCACAAGGAATTGACCCAGAAATTGGAAGAATGTGCTGTCGC
TCTTCGATGA
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