mRNA_E-siliculosus-1a_M_contig87.16715.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16715.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16715.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:106445..106828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size333
Model size384
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.655205-CDS-E-siliculosus-1a_M_contig87:106444..1067771622936321.655205-CDS-E-siliculosus-1a_M_contig87:106444..106777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 106445..106777 +
1696251024.6417472-CDS-E-siliculosus-1a_M_contig87:106444..1067771696251024.6417472-CDS-E-siliculosus-1a_M_contig87:106444..106777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 106445..106777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.6726668-UTR-E-siliculosus-1a_M_contig87:106777..1068281622936321.6726668-UTR-E-siliculosus-1a_M_contig87:106777..106828Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 106778..106828 +
1696251024.6527042-UTR-E-siliculosus-1a_M_contig87:106777..1068281696251024.6527042-UTR-E-siliculosus-1a_M_contig87:106777..106828Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 106778..106828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16715.1prot_E-siliculosus-1a_M_contig87.16715.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 106445..106777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16715.1

>prot_E-siliculosus-1a_M_contig87.16715.1 ID=prot_E-siliculosus-1a_M_contig87.16715.1|Name=mRNA_E-siliculosus-1a_M_contig87.16715.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=111bp
RGANSAYGGPPSRRRCYRNEPICAGQNCFYGSILSFMRYIWPLLVFCILS
SSVFFEFLSCSSSGLLSSSAPWFQGLHFVQYLLFFGSSYFVPSSCVSCSS
VTVISSCGFP*
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mRNA from alignment at E-siliculosus-1a_M_contig87:106445..106828+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16715.1 ID=mRNA_E-siliculosus-1a_M_contig87.16715.1|Name=mRNA_E-siliculosus-1a_M_contig87.16715.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:106445..106828+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCGGGGCAAACTCTGCATACGGTGGTCCCCCCTCTCGCCGCCGGTGCTA
CAGGAATGAACCCATTTGCGCAGGACAGAACTGCTTTTATGGCAGCATTC
TTTCATTCATGCGATATATTTGGCCTTTACTGGTTTTCTGTATCTTGTCA
TCGTCGGTTTTCTTCGAATTTCTTTCTTGTTCGTCATCTGGCCTTTTGTC
ATCGTCGGCACCATGGTTTCAAGGTCTTCATTTTGTGCAGTATTTATTGT
TCTTTGGAAGTAGTTACTTCGTTCCTTCTTCCTGTGTTTCGTGCTCGAGT
GTTACCGTAATAAGCAGTTGCGGCTTCCCGTAAAAATATGAAGCTTCAGA
CCCGCAACTCCGACGAAACTCGTCGAGGAGTTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:106445..106828+

>mRNA_E-siliculosus-1a_M_contig87.16715.1 ID=mRNA_E-siliculosus-1a_M_contig87.16715.1|Name=mRNA_E-siliculosus-1a_M_contig87.16715.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:106445..106828+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCGGGGCAAACTCTGCATACGGTGGTCCCCCCTCTCGCCGCCGGTGCTA
CAGGAATGAACCCATTTGCGCAGGACAGAACTGCTTTTATGGCAGCATTC
TTTCATTCATGCGATATATTTGGCCTTTACTGGTTTTCTGTATCTTGTCA
TCGTCGGTTTTCTTCGAATTTCTTTCTTGTTCGTCATCTGGCCTTTTGTC
ATCGTCGGCACCATGGTTTCAAGGTCTTCATTTTGTGCAGTATTTATTGT
TCTTTGGAAGTAGTTACTTCGTTCCTTCTTCCTGTGTTTCGTGCTCGAGT
GTTACCGTAATAAGCAGTTGCGGCTTCCCGTAACGCGGGGCAAACTCTGC
ATACGGTGGTCCCCCCTCTCGCCGCCGGTGCTACAGGAATGAACCCATTT
GCGCAGGACAGAACTGCTTTTATGGCAGCATTCTTTCATTCATGCGATAT
ATTTGGCCTTTACTGGTTTTCTGTATCTTGTCATCGTCGGTTTTCTTCGA
ATTTCTTTCTTGTTCGTCATCTGGCCTTTTGTCATCGTCGGCACCATGGT
TTCAAGGTCTTCATTTTGTGCAGTATTTATTGTTCTTTGGAAGTAGTTAC
TTCGTTCCTTCTTCCTGTGTTTCGTGCTCGAGTGTTACCGTAATAAGCAG
TTGCGGCTTCCCGTAA
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