mRNA_E-siliculosus-1a_M_contig86.16698.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16698.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16698.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16698.1 vs. uniprot
Match: A0A6H5KGV6_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.880e-12
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 3 
Query:    3 TGRRTSGSTRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP 131
            TGRRTSG+TRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP
Sbjct:  316 TGRRTSGNTRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP 358
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGV6_9PHAE4.880e-1297.67Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:669742..671483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size132
Model size1742
Exons1
Ec32 orthologEc-27_002400.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16698.1prot_E-siliculosus-1a_M_contig86.16698.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 670011..670142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936320.7719984-UTR-E-siliculosus-1a_M_contig86:669741..6700101622936320.7719984-UTR-E-siliculosus-1a_M_contig86:669741..670010Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 669742..670010 +
1696251024.1716607-UTR-E-siliculosus-1a_M_contig86:669741..6700101696251024.1716607-UTR-E-siliculosus-1a_M_contig86:669741..670010Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 669742..670010 +
1622936320.8147233-UTR-E-siliculosus-1a_M_contig86:670142..6714831622936320.8147233-UTR-E-siliculosus-1a_M_contig86:670142..671483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 670143..671483 +
1696251024.2045205-UTR-E-siliculosus-1a_M_contig86:670142..6714831696251024.2045205-UTR-E-siliculosus-1a_M_contig86:670142..671483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 670143..671483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936320.7928796-CDS-E-siliculosus-1a_M_contig86:670010..6701421622936320.7928796-CDS-E-siliculosus-1a_M_contig86:670010..670142Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 670011..670142 +
1696251024.184893-CDS-E-siliculosus-1a_M_contig86:670010..6701421696251024.184893-CDS-E-siliculosus-1a_M_contig86:670010..670142Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 670011..670142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16698.1

>prot_E-siliculosus-1a_M_contig86.16698.1 ID=prot_E-siliculosus-1a_M_contig86.16698.1|Name=mRNA_E-siliculosus-1a_M_contig86.16698.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=44bp
MCARFSGKTVISLLAFRTMFTCTCLYSLLCVLGFLQYGMLLRA*
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mRNA from alignment at E-siliculosus-1a_M_contig86:669742..671483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16698.1 ID=mRNA_E-siliculosus-1a_M_contig86.16698.1|Name=mRNA_E-siliculosus-1a_M_contig86.16698.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1742bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:669742..671483+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGACCGGGAGGAGGACCAGCGGGAGCACCAGGCCCTCCAGCGCTATCAGC
AAGTCGCTGCCGCCGTCGCCGAAGCCCTCGGCGGCAGACAAGCGGCTTCG
GCTCAGCTCGGACAGCGATGACAAGCGTCCGTGAAGTTGGAATGGCGCGA
GCGTCTTCGCTCCCAAAGCGCGCAGCCGTTCTTGTTCATCGCGAATAAAT
TGAACAGCGGGTGCTGCTGCAAGTCTTGTGGGATTCTTAGATGTATGTAC
GTCGTGCTTAGATACGCTCATGTGTGCTCGGTTTTCTGGAAAAACCGTCA
TTTCTTTGCTTGCGTTTCGTACGATGTTCACATGTACGTGCTTGTATTCG
TTGTTATGTGTGCTCGGTTTTCTGCAATACGGTATGCTTCTAAGGGCATA
GCCATCATCACCCTGCTGGCGTTTCCTTCTCGCGTAGGGATAGCGTGTCG
ATTCTTTGCTTGGTGGGCGTGATAGTTGGAGACGGGTGGCTGAGCTCAAT
GCACCAACCAGGAGGTTGGTGCCCTGTGTACGTCTGGGTTGGGTGGGACG
ACGACGTAAATATGCCTTTTTTCTAGGTCCGCAAAAGTGTTCAAGGTTTT
GAAGTAATGTTTCTTTTTCTTTTCAGGTTTTTTATGTAACGGTTCTCCAG
CTGTAGCGTTATTTCTCATGACGTATGTATGTTGCTGTCCAGCATGGAGC
GCGATTTCTCATCACGCTGTTGCTGCTGAACCGTTCCCCTCTCACTCTCG
CTCAGCTTCCAACCGGACGAAACCCGGCAGATTGATAGAAAAGAGCGCGT
TTGACGCAGGGCATTTATGGGTAGTTTTTTTGGGTGGTTTTTTTCCGCGC
CAGTCGACAGGGTGCACTGCTGTTAAGGGGCGAGGTTATACATGTAAGGA
GGAGAGGAGAGTATATCGGAAGCTTATCGCATGTTCGTTGACTGTGTTGA
TTTGATATCGCATGCCGGCCAGAGGTTATAAGAAGGAGAGGGGAGTATGT
CGTAAACTTGTCGCATGTTCGTTGCTGCTGTGTTGATTTATATTGCATAT
TGGCCTCGCGTCGTATAAATTCTTACCTTTTTCTGGCCTAAAGGCCTTGC
CGGAATCAGGCCTATGATTGGGATCGGGGGGGGGGCGGACGTGGAAGGCA
GGGGGCCGCGCTGTAGAATATTGCATGCACTTCCCCCCTACGGCTTGTAC
ATTTTGTGTTATGGAAGGCACCGGTATCCGTGCGCCTGTTGAACATGTGC
GTGTAAAGACTGCTACTACTACTGCAACCGTGCGCAAACATATTCCTGCT
GTTTTTCTTGGCAGGTTGTACCTGAGTTTACCCGCTTGTTTTGCCTACCT
ACAGGTGGGTTGTGTTCTCCCTCAGTCGCCTGTAGTTAAGAAATATGCAT
ACAAACGACGGTACCAGCCGCGGTTGTGGGGCATCCCGGCGTGCCGGTGT
GAGGAGCTGTCGTACACTTGAGCGTTTGCTGTTGTAGAACTTAAGGGAGG
GTGTCTGTTTTTGTTGCAGGGAACGAAAGAACATGGATCGGAGAGGAAGG
ACAAGGCGTATTATTGCAACGTAAACAGGGGCCGGAAGAAGAGGTTGGCC
TAGACCTTGCCGAAATTGTGGGCTAGTTTTTAAAGGTATAGACTATCCGT
GTTGTAGGGCTACTTTCAATGGTGACGTTCCATGCTGCAAGGTTGTCTGG
AAGCTTACGACGTGGTGCGTGGGTGTGGAGGGTCATAACTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:669742..671483+

>mRNA_E-siliculosus-1a_M_contig86.16698.1 ID=mRNA_E-siliculosus-1a_M_contig86.16698.1|Name=mRNA_E-siliculosus-1a_M_contig86.16698.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:669742..671483+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGTGCTCGGTTTTCTGGAAAAACCGTCATTTCTTTGCTTGCGTTTCG
TACGATGTTCACATGTACGTGCTTGTATTCGTTGTTATGTGTGCTCGGTT
TTCTGCAATACGGTATGCTTCTAAGGGCATAGATGTGTGCTCGGTTTTCT
GGAAAAACCGTCATTTCTTTGCTTGCGTTTCGTACGATGTTCACATGTAC
GTGCTTGTATTCGTTGTTATGTGTGCTCGGTTTTCTGCAATACGGTATGC
TTCTAAGGGCATAG
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