mRNA_E-siliculosus-1a_M_contig86.16676.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig86.16676.1 vs. uniprot
Match: A0A6H5KXM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM5_9PHAE) HSP 1 Score: 967 bits (2499), Expect = 0.000e+0 Identity = 759/847 (89.61%), Postives = 773/847 (91.26%), Query Frame = 2
Query: 389 MSFGMEQARERLRQATAICASVETGYWQHRGSITDKSAATFSQYRERLVEEKHALTGEVLSHLGLQWVAPSHGASPSSNSSRSAASTAGEPPAAGKLLLPRPPFPRPAAVDNRFQRARVPPPAAATGGRSSCLVDEGQKERSREAGSSAQREPSSRGVWVEEDQFSPSVRPAYKNDEKDAQEQVIVSAAERGYHXXXXXXXXXXXXXXXXXXX---PNDHLQHPDVAARYGGSSGATVDLGGRSRLWNTENEVPSPAAAVTPAPAGRGSDGVVGDNGALVSPPRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQISPSLVSTLPAVLVETGPLPPLAGAXXXXXXXXXXXXXXXXXXXXXXXXXXHQEFMNAAGSAAVTTSVGPYRPFLGSPEMAAVAVSEASSRGSFSSTGSSPAMQHNHHGFYPATAAAGGDFSASSATPDPDHIPFRRVSMTSTTSHDWEQQREMRLPRAGDVDGGXXXXXXXXXXXXXXXXXXVRVLGLRNGHASXXXXXXXXXTEPSTSSDAVVAGSKRFRDAFEESQAPLPLPPPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGGVAPNGTGXXXGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSAAXXXXXXXXXX-TAPTPAQAW 2917
MSFGMEQARE+LRQATA+CASVETGYWQHR I KSAATFSQYRERLVEEKHALTGEVLSHLGLQWVAPSHGASPS RSAASTAGEPPAAGKLLLPRPPFPRPAAVDNRFQRA VPP AAA GGRSS +VDE QKERSREAGS AQREPSSRGVWVEEDQFSP +RPAY+N+EKDAQEQVIVSAAERGY XXXXXXXXXXXXXX XXX P DHLQHPD+A +YG SSGAT DLGGRSRLWNTENEVPSPAAAVTPA AGRGSDGVVGDNGALVSPPR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PR+ISPSLVSTLPAVLVETGPLPPL G XXXXXX HQ+FMNAAGSAAVTT VGPYRPFLGSPEMAAVAVSEASSRGSFSSTGSSPA+QHNHHGFYPATAA GGDF ASSA DPDHIPFRRVS+TSTTSHDWEQQ EMR PRAGDVDGGXXXXXXXXXXXXXXXXX VRVLGLRNGHASXXXXXXXXX EPSTSSDAVV GSKRFRD+FEE Q+PLPL QMSLPPAVKIVRPGGGAVGPPTTMTRHGRGG VAPNGT GRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA XXXXXXXXXX TAPT AQAW
Sbjct: 1 MSFGMEQAREKLRQATAVCASVETGYWQHRSGINGKSAATFSQYRERLVEEKHALTGEVLSHLGLQWVAPSHGASPS----RSAASTAGEPPAAGKLLLPRPPFPRPAAVDNRFQRASVPPLAAA-GGRSSRVVDEEQKERSREAGS-AQREPSSRGVWVEEDQFSPRMRPAYENNEKDAQEQVIVSAAERGYEAXXXXXXXXXXXXXXRXXXXQQPKDHLQHPDLATQYGDSSGATADLGGRSRLWNTENEVPSPAAAVTPAAAGRGSDGVVGDNGALVSPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PREISPSLVSTLPAVLVETGPLPPLTGTAAADXXXXXXAPLPYKRTRKTSAEE-HQDFMNAAGSAAVTTGVGPYRPFLGSPEMAAVAVSEASSRGSFSSTGSSPALQHNHHGFYPATAA-GGDFPASSAAADPDHIPFRRVSITSTTSHDWEQQHEMRQPRAGDVDGGXXXXXXXXXXXXXXXXX-VRVLGLRNGHASXXXXXXXXXXEPSTSSDAVVVGSKRFRDSFEEIQSPLPL----QMSLPPAVKIVRPGGGAVGPPTTMTRHGRGG-VAPNGTAGGGGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSAXXXXXXXXXXXXTAPTLAQAW 832
BLAST of mRNA_E-siliculosus-1a_M_contig86.16676.1 vs. uniprot
Match: D8LBU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU9_ECTSI) HSP 1 Score: 575 bits (1482), Expect = 1.130e-182 Identity = 426/676 (63.02%), Postives = 432/676 (63.91%), Query Frame = 2
Query: 365 RPGATRNTMSFGMEQARERLRQATAICASVETGYWQHRGSITDKSAATFSQYRERLVEEKHALTGEVLSHLGLQWVAPSHGASPSSNSSRSAASTAGEPPAAGKLLLPRPPFPRPAAVDNRFQRARVPPPAAATGGRSSCLVDEGQKERSREAGSSAQREPSSRGVWVEEDQFSPSVRPAYKNDEKDAQEQVIVSAAERGYHXXXXXXXXXXXXXXXXXXX---PNDHLQHPDVAARYGGSSGATVDLGGRSRLWNTENEVPSPAAAVTPAPAGRGSDGVVGDNGALVSPPRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQISPSLVSTLPAVLVETGPLPPLAGAXXXXXXXXXXXXXXXXXXXXXXXXXXHQEFMNAAGSAAVTTSVGPYRPFLGSPEMAAVAVSEASSRGSFSSTGSSPAMQHNHHGFYPATAAAGGDFSASSATPDPDHIPFRRVSMTSTTSHDWEQQREMRLPRAGDVDGGXXXXXXXXXXXXXXXXXXVRVLGLRNGHASXXXXXXXXXTEPSTSSDAVVAGSKRFRDAFEESQAPLPLPPPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGGVAPNGTGXXXGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL 2383
RPGAT NTMSFGMEQARERLRQATA+CASVE+GYWQHR + DK QEQVIVSAAERGY XXXXXXXXXXXXXXXXXX P DHLQHPDVAARYGGSSGAT DLGGRSRLWNTENE XXXXXXXXXXXXXXXXXXXPRQISPSLVSTLPAVLVETGPLPPLAGA HQ+FMNAAGSAAVTT VGPY PFLGSPEMAAVAVSEASSRGSFSSTGSSPA+QHNHHGFYPATAA GGDFSASSA DPDHIPFRRVS+TSTTSHDWEQQREMR PRAGDVDGGXXXXXXXXXXXXXXXXXX RVLGLRNGHA XXXXXXX TEP TSSDAVVAGSKRFRDAFEESQAPLP PPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGG APNGT XXGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL
Sbjct: 25 RPGATSNTMSFGMEQARERLRQATAVCASVESGYWQHRSRVHDK------------------------------------------------------------------------------------------------------------------------------------------------QEQVIVSAAERGYQAXXXXXXXXXXXXXXXXXXXXQPKDHLQHPDVAARYGGSSGATADLGGRSRLWNTENE----------------------------------------------QXXXXXXXXXXXXXXXXXXXPRQISPSLVSTLPAVLVETGPLPPLAGAGAPPPYKRTRKTSAEE----------HQDFMNAAGSAAVTTGVGPYHPFLGSPEMAAVAVSEASSRGSFSSTGSSPALQHNHHGFYPATAA-GGDFSASSAAADPDHIPFRRVSITSTTSHDWEQQREMRQPRAGDVDGGXXXXXXXXXXXXXXXXXX-RVLGLRNGHAXXXXXXXXAATEPLTSSDAVVAGSKRFRDAFEESQAPLP--PPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGG-APNGTAGXXGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL 495
BLAST of mRNA_E-siliculosus-1a_M_contig86.16676.1 vs. uniprot
Match: D8LBV0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV0_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.410e-25 Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 2
Query: 2642 LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSAAXXXXXXXXXX-TAPTPAQAW 2917
LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA XXXXXXXXXX TA TPAQAW
Sbjct: 57 LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSAXXXXXXXXXXXXTASTPAQAW 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig86.16676.1 >prot_E-siliculosus-1a_M_contig86.16676.1 ID=prot_E-siliculosus-1a_M_contig86.16676.1|Name=mRNA_E-siliculosus-1a_M_contig86.16676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=844bp MSFGMEQARERLRQATAICASVETGYWQHRGSITDKSAATFSQYRERLVEback to top mRNA from alignment at E-siliculosus-1a_M_contig86:513805..527550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig86.16676.1 ID=mRNA_E-siliculosus-1a_M_contig86.16676.1|Name=mRNA_E-siliculosus-1a_M_contig86.16676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=13746bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:513805..527550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:513805..527550+ >mRNA_E-siliculosus-1a_M_contig86.16676.1 ID=mRNA_E-siliculosus-1a_M_contig86.16676.1|Name=mRNA_E-siliculosus-1a_M_contig86.16676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5064bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:513805..527550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |