mRNA_E-siliculosus-1a_M_contig86.16674.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig86.16674.1
Unique Name	mRNA_E-siliculosus-1a_M_contig86.16674.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI)

HSP 1 Score: 565 bits (1457), Expect = 4.900e-203
Identity = 300/304 (98.68%), Postives = 300/304 (98.68%), Query Frame = 1

Query:    1 MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFL--DSLAGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNRVEMLGSLF 906
            MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFL  DSL GEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRN VEMLGSLF
Sbjct:    1 MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLFLDSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A835Z320_9STRA (CDK-activating kinase assembly factor MAT1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z320_9STRA)

HSP 1 Score: 215 bits (547), Expect = 5.610e-65
Identity = 143/301 (47.51%), Postives = 190/301 (63.12%), Query Frame = 1

Query:    7 DELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLDSLAGEGLDGAGGEPGANGNAPA-AVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNRVEMLGSLF 906
            DE VC +CK ++D+   ITQ KL+VNN CGH+F  +C ++E  R+K F CP C+  V+R GLT+KTLDEL V +++T R+RI KIFN++EEDF   L  YN+YL  +ED+IY L +G   EA    A +R YED HR EI +N AR +D ++VVE+ +AA  QQ+E+RKH  Q E  R +   RK+  EA EVALGER+ VT+T+ D L L    G+G    GG  G    APA A+  G R ++ I APLPQP  +  T+R + +M    R    + A  AP RA G +RN  E  GSLF
Sbjct:    2 DEDVCSICK-SEDK---ITQDKLLVNNLCGHKFCGSCCDREFSRKKVFQCPKCKKDVKRTGLTQKTLDELAVQKELTHRRRILKIFNKTEEDFE-TLLEYNNYLAEVEDLIYDLTNGVDVEA--CLAKIRAYEDAHREEIIQNQARDMDTQRVVEQTIAAHAQQEETRKHDKQAEAQRLRLKRRKMHAEAVEVALGEREAVTSTLMDVLVL----GDG----GGADGXXXAAPAGALLPGQRMLIQINAPLPQPILHSATKRLYENMPPRARAAARRDAGGAPSRADGMRRNWFEACGSLF 287

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A7S1GHB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHB7_CYCTE)

HSP 1 Score: 139 bits (351), Expect = 8.370e-36
Identity = 81/209 (38.76%), Postives = 130/209 (62.20%), Query Frame = 1

Query:    4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            DD   C +C  A+ ++SN+T Q  +  N    CGH+F  AC E+EL RRK FPCP C+  V+R  L+ +TLD+++  +D + R+R+TK+FN+ E DF   L  YN+YLE +ED+IY + + ++  A+  +A V+ YE+ ++ +I    +++ D E+ + +++AA +++ E RK     EE       RK K EA EV LGER+ V+A +
Sbjct:    5 DDLFRCAICGTAEGDSSNLTTQSSLQTNATVGCGHQFCTACVERELSRRKEFPCPICETPVKRVTLSTRTLDDVQCEKDTSWRRRVTKVFNKIESDFS-TLLEYNNYLEEVEDIIYAIVN-EEPNAEEMKAKVKAYEEANKSQIVIRQSQRADEERSIADRIAAEQREVERRKREVIEEERAIALTKRKYKQEAAEVLLGEREEVSAEL 211

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A1E7FR87_9STRA (RING-type domain-containing protein n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FR87_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.180e-35
Identity = 76/209 (36.36%), Postives = 132/209 (63.16%), Query Frame = 1

Query:    4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            +D   C +C  A+ ++SN+T Q  + NN    CGH+F  +C ++EL RR+ FPCP C+  V++  L+ +TLD++   +D + R+R+ K+FN++++DF   L  YN+YLE +ED+IY + + ++  A+  +  ++ YE+ HR EI    +++ D E+ +++Q+A+ +++ E RK   + EE       RK K E+ EV LGERD V+A +
Sbjct:   10 EDLFSCAICGIAEGDSSNLTSQSQLQNNSTVGCGHQFCSSCIDRELSRRREFPCPICETPVKKVTLSTRTLDDVLCEKDTSWRRRVMKVFNKTQKDFPS-LLEYNNYLEEVEDMIYSIVN-EEPNAEECKGKIKAYEENHRTEIVIRQSQRADAERAIQDQIASEQREAERRKRELREEEKAIALTKRKFKQESAEVLLGERDEVSAEL 216

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A6U3Q473_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q473_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.900e-34
Identity = 76/209 (36.36%), Postives = 131/209 (62.68%), Query Frame = 1

Query:    4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            DD   C +C  ++ ++SN+T    +  N    CGH+F   C E+EL RRK FPCP C+  V+R  L+ +TLD+++  +D + R+R+ K++N+ E DF   L  YN+YLE +ED+IY + + ++  A+  +A V+ YE+ ++GEI    +++ D E+ + +++AA +++        + EE  K+Q   KLKL++ +VALGER+ V+A +
Sbjct:   11 DDLFRCAVCGVSEGDSSNLTTVTALYTNATVGCGHQFCSTCVERELARRKVFPCPVCETAVKRVTLSTRTLDDVQCEKDTSWRRRVLKVYNKVETDFPS-LLEYNNYLEEVEDIIYSIVN-EEPNAEEVKAKVKAYEEANKGEIVIRQSQRADEERSMADRIAAEQREAXXXXREFEEEEKFKKQTKAKLKLQSTQVALGEREEVSAEL 217

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A6U3UWA8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UWA8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.970e-34
Identity = 77/202 (38.12%), Postives = 127/202 (62.87%), Query Frame = 1

Query:   19 CVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTA 615
            C +C  ++ +ASN+T Q  +  N    CGH+F  +C E+EL RRKTFPCP C+  V+R  L+ +TLD+L+  +D + R+RI KI+N+ E+DF   L  YN+YLE +ED+I+ + + ++  A+  +A V+ YE++++ +I    +++ D E+ + +++A+  ++ E RK   +  E       RK K E  EV LGERD V+A
Sbjct:   14 CAICGLSEGDASNLTTQNNLQTNGTLGCGHQFCNSCVERELSRRKTFPCPICKTVVKRVTLSTRTLDDLQCEKDTSWRRRILKIYNKVEKDFP-TLLEYNNYLEEVEDIIFSIVN-EEPNAEEVKAKVKAYEEKNKSQIVIRQSQRADEERCIADRIASETREAERRKREFEEVEKAVASTKRKFKQETTEVMLGERDQVSA 213

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A7R9W6S0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6S0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 9.500e-34
Identity = 74/204 (36.27%), Postives = 130/204 (63.73%), Query Frame = 1

Query:   19 CVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            C +C   + ++SN+T Q  +  N    CGH+F  AC E+EL RR+ FPCP C+ +V+R  L+ +TLD+++  +D + R+R+ K++N++E DF   LR YNDYLE +ED+I+ + + ++ +A+  +A +R YE+ ++ +I    +++ D E+ + +++AA ++  E RK      E    +  R+LK E+ EV LGER+ V+A +
Sbjct:   12 CAVCGVQEGDSSNLTTQSALWTNATVGCGHQFCTACVERELSRRRVFPCPICETEVKRVTLSTRTLDDVQCEKDTSWRRRVMKVYNKAESDFPS-LREYNDYLEEVEDIIFKIVN-EEPDAEEMKAKLRTYEEANKSQIVIRQSQRADEERSIADRIAAEQRDAERRKREFFETERAIAETKRQLKKESTEVMLGEREEVSAEL 213

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A1Z5JMD5_FISSO (CDK-activating kinase assembly factor MAT1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMD5_FISSO)

HSP 1 Score: 133 bits (335), Expect = 1.950e-33
Identity = 70/204 (34.31%), Postives = 130/204 (63.73%), Query Frame = 1

Query:   19 CVLCKGAQDEASNITQQKLVVNN---KCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            C +C  A+ ++SN+T Q  ++ N   KCGH+F Q+C ++E  RR+ FPCP C   V+R  LT++TLD+++  +D + R+R+ K++N+++ DF   L  YN+YLE +ED+I+ + + ++  A+  +  +++YE  ++  I    +++ D E+ +++++AA +++ E  +   Q +E    Q  RK K E+ EV LGER+ V+A +
Sbjct:   12 CAICGTAEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFARRREFPCPVCSTMVKRVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTQADFE-TLLEYNNYLEMVEDMIFSIVN-EEPNAEECKNKIKDYEQANKSAIVIRQSQRADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 213

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: B7G382_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G382_PHATC)

HSP 1 Score: 133 bits (334), Expect = 2.670e-33
Identity = 72/209 (34.45%), Postives = 133/209 (63.64%), Query Frame = 1

Query:    4 DDELVCVLCKGAQDEASNITQQKLVVNN---KCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            DD   C LC  A+ ++SN++    +  N   +CGH+F  +C ++EL+R++ FPCP CQ  V+R  LT ++LD+++  +D + R+R+ K+FN++E DF   L  +N+YLE +ED+IY + + ++ +A+  +A ++EYE+ H+ EI    +++ D E+ +++++AA ++  E  +     EE       ++LK E+ +V LGER+ V+A +
Sbjct:    7 DDLFRCALCGTAEGDSSNLSSHTSLQTNATVRCGHQFCNSCIDRELVRKREFPCPVCQTPVKRVTLTVRSLDDVQCEKDTSWRRRVLKVFNKTEPDFSS-LLEFNNYLEQVEDMIYSIVN-EEPDAEACKAKIKEYENAHKTEIVIRQSQRADEERSIQDRIAAEQRSTERLRREAFDEEKAVANAKKRLKQESTQVLLGEREEVSAEL 213

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Match: A0A7S3DRW1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRW1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.770e-30
Identity = 71/204 (34.80%), Postives = 123/204 (60.29%), Query Frame = 1

Query:   19 CVLCKGAQDEASNITQQKLVVNN---KCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM 621
            C +C  A+ +ASN++ Q  +  N   +CGH+F  +C ++EL+RR+ FPCP CQ  V+R  LT ++LD ++  +D + R+RI  ++N+SE DF   L  YN+YLE +ED+IY + + +   A+  +A V+EYE  ++ +I    +++ D E+ +++++A  ++  E  +     EE       +K K E  EV LG R+ V+A +
Sbjct:   37 CAICGTAEGDASNLSNQTSLQTNATVRCGHQFCNSCLDRELVRRREFPCPICQTAVKRVNLTSRSLDHVQCEKDTSWRRRIISVYNKSENDFPS-LLEYNNYLEQVEDMIYAIVNEEPA-AEEIKAKVKEYEQENKAQIVIRQSQRADEERSIQDRIAYEQRLAEQTRLAAVEEEKHIAIAKKKFKTETTEVLLGYREEVSAEL 238

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig86.16674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBU7_ECTSI	4.900e-203	98.68	RING-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A835Z320_9STRA	5.610e-65	47.51	CDK-activating kinase assembly factor MAT1-domain-...	[more]
A0A7S1GHB7_CYCTE	8.370e-36	38.76	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A1E7FR87_9STRA	2.180e-35	36.36	RING-type domain-containing protein n=3 Tax=Bacill...	[more]
A0A6U3Q473_9STRA	2.900e-34	36.36	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A6U3UWA8_9STRA	7.970e-34	38.12	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7R9W6S0_9STRA	9.500e-34	36.27	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A1Z5JMD5_FISSO	1.950e-33	34.31	CDK-activating kinase assembly factor MAT1 n=2 Tax...	[more]
B7G382_PHATC	2.670e-33	34.45	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7S3DRW1_9STRA	3.770e-30	34.80	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig86	contig	E-siliculosus-1a_M_contig86:494835..499737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	909
Model size	909
Exons	8
Ec32 ortholog	Ec-27_002640.1
Ec32 ortholog description	Zinc finger, RING/FYVE/PHD-type
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko00002,ko03021,ko03400
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	DKL
EggNOG OGs	COG5220@1,KOG3800@2759
EggNOG free text desc.	cyclin-dependent protein serine/threonine kinase activator activity
GOs	GO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
KEGG Module	M00290
KEGG Pathway	ko03022,ko03420,map03022,map03420
KEGG ko	ko:K10842
Preferred name	TFB3
Seed eggNOG ortholog	2880.D8LBU7
Seed ortholog evalue	2.5e-161
Seed ortholog score	574.7
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig86.16674.1	prot_E-siliculosus-1a_M_contig86.16674.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig86 494835..499737 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig86:494835..499737+
coding sequence from alignment at E-siliculosus-1a_M_contig86:494835..499737+

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16674.1

>prot_E-siliculosus-1a_M_contig86.16674.1 ID=prot_E-siliculosus-1a_M_contig86.16674.1|Name=mRNA_E-siliculosus-1a_M_contig86.16674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=303bp
MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTF
PCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLR
AYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKV
DREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGER
DHVTATMGDGLFLDSLAGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPA
PLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNRVEMLGS
LF*

mRNA from alignment at E-siliculosus-1a_M_contig86:494835..499737+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig86.16674.1 ID=mRNA_E-siliculosus-1a_M_contig86.16674.1|Name=mRNA_E-siliculosus-1a_M_contig86.16674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4903bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:494835..499737+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATGATGAACTGGTGTGTGTGCTCTGCAAGGGCGCGCAGGATGAAGC
GAGCAACATCACGCAGCAAAAACTGGTCGTCAACAACAAGTGTGGACACC
GCTTGTGAGTCACATTGACACACTGCTCCGTAAGACTACTATTAATATCT
GTTGTATCTCAGAAGCAATATCAACGAAGGCACTACAGCAGGTAGTATTT
GGTATGCAACTTCATGAGGTGTATCCATGCTGCACACGCGACTTGCTAAA
CAACGGACTAGTACAACACTTCGCCCACCCCCTTTCCGCCCATTCCTGCA
CAGTGGCGGTTTGCTGTCCTAATTGGCGGACGAATCCACATCTTGTTTCA
CAGCAACACGAACCTGCAGCAGCAATCCCGCTTTTTTCTCGCACTGGCTC
CCCGCCTGCCTCAAATCTTACCTGTCTCTCTCTCGACAAAATCCGGTGCC
TGCCCCTCGGCGCGTCTAATTTTCCTTTCCTTGCTTGGCCCGCAACAACG
TTGGGACTCTCACAGCCACCAAGCTTGCGCGGAGAAGGAGCTTCTTCGTC
GCAAGACGTTTCCGTGTCCAGCGTGTCAAGTACAGGTACGCAAAGTTTTC
TGCTGTACTCTGGTCTGCGACATAGTGGCATGGCGCACAGATTGGAATTA
TATAGAGTATGCGTACGACTGCTGTTCACAACAAATTCGTTTCCTGACCC
CGCCTCCTCAGGTCAGGCCTCCCTCGTCCGCCTGCCTTGACCAGAGTGTG
GCGTCACGCACACAGTGTGTAGCGGCAGAGTATTTTTTTTAGCCGTTCGA
GCATCAGATTTTGTAGCAGCGAGGCTGCAGACCAACGCTACGGGTAGTTC
TTGCCACGATTGGGTTACCCATGTAATGTGCAGTCTATTTCCACTCCACA
GGAGTATCGAGTCTAGAATCTTTATGTCGACAGCAGTAGCAATTCTGCTG
TCACAAGTAGCAATATTGCTGTTTGGACGGCACACTATTATTAGTGTTTT
GTTTTGCCTCCCGGAGAGGGTGCGATAAGAGTGGTCGCATTGCTGATGAT
GCGGTGGCGAATGGGCCAATGTACGAGAGGCAGGGACAGACTGAGACAGG
CAGGAAGGCAGGCAGAATCGGAACGGGTTTAAACAACATTGGAAATCACT
GGTAAATCCTTGAAAAAAAAATCACCGGTGAACCCGCTCTCGTGTCATCA
ACCTCCTCTTTCTTGCCATCTTCGCCACCCCCCCTTCGCCCGTCGCAAAT
TTTGGTGTGTGACGCCTCCACACGCCCGCGCGCGCGTTGCGGAACACACC
CACCCTAAAACCTATGTCTTGGCACCAGGTGCGTCGAGCCGGCTTGACCG
AAAAGACTCTGGACGAGCTAGAGGTCGCGAGGGATATCACCGTGCGCAAG
CGGATAACAAAGATGTACGTGACCGGACCGTGCCCGCGAGAGAGAGAGAG
AGAGAGACGCGATGGACGCACGCCCGTGCTTGTTGTCTCTCGCTTGCGGG
TGTCTGTCTGCCGTCGGCAAATTTTTATCCGTGTGGCGCATCTCGATAAG
AAGTCTAGGGCTTTGCTTCTTCTCCTTCCTGGCCGACCTGGTCGCCAGAC
GGCCGGGCAACAGCCTACCAATGACTCACCCGTCACCTCGACATGAGCCC
CGCCGCTGACCGTTGATACAAAAATGCCGGGGTTTCTTTAGGCGCTACGG
AGGCAAACGGAATGTCCCACCCGCTATCAATCGTACCAACTACCGGGTGA
ACGGTGACCCTTGTGGCAGGAGGGGGGGCGCCACGAGCAGTGCACCCGAA
ACTTCCCTCGGAGTTGGTTGTTGCCCCTCGCCACTATATTTTGAAGATGC
CGCCCCTCGCCATTATATTTCGAAGATGTGAACATGTGAAGATGTGAAGA
TGCCGCTCGCTCCGGAGACGGGCCGACCGAGCGCTCTTGTACGTACTTCC
AAGTCAGAGGTCGAAATCGACCATGAAAACCCCGGGTTTCCAAGCCCCCG
CCGGAAGGGAGGCATCCATCCCTCCCTCCTATCCACCGGCGTTGTTTGGT
ACAGCATCCCACCAATCACCACTTAACCAACAACTATTCAAGGGCATCCC
ACCCGAATATGAACCCTGTTTTTTTTTAACCATAATTGATTTTGGAACAG
CTTCAACCGTTCGGAGGAGGATTTCGGCGGGGACCTCCGCGCCTACAACG
ACTACCTTGAGACCATGGAGGACGTGATCTACGGGCTCTGCAGCGGCGAC
AAGGGGGAGGCGGACAGGGCCCAGGCCACCGTGAGGGAGTACGAGGACAG
GCACCGGGGCGAGATCACCAAAAACGCCGCCAGGAAGTGAGTAAGCAGAT
GATAGATGGCAGATGGCATTACCTGCCATTTAGATGCCGGTTTTACCCGG
GGGAGGGGGAGGTCCGGGCTATAGGTTTTGGTTTGCTCCTATAGAAACAA
GACGAAAGGCCACCGCGAATCAGTCGTTTCTCGATTCTTGTCTTGTAGGA
TTACGTGGAAGTTGAGATATGCAACAACAACACATCGTCTTGTGTGGCAC
ACTCCCCGTGAGTGAACGAAGCGAGATCATACTTGCCGAAGAGTCGGTCC
CGCTCTCCGTGCTTACCACAACGGTGTCATCGATTTGCTGTTTTTTTTCC
CGCCTCCGAAATCCCTCCCCTCGCTGTGATGATGATGATGATGATGATGG
CGACGGCGGTGGTGGTGGTGGTGTCAGGGTGGACCGAGAAAAGGTCGTGG
AGGAACAGCTGGCGGCGCTAAGACAACAACAGGTGAGTGACTCGCTCACT
CTCTCTCTCATCCGTTTTTTTTTGTCGTCAGTGGTCCGGCTGTCGACACA
ACCAGCGTTTTGTTGCGGCCATGCATATGCCAGCACTGGCCGTGCGTTTT
GGCCTCGTATGCTATGATACTGTACTGTAGTGTACTGTAGATGTGTCCGG
CCCCCTTCTGTGTTCGAGGGTATACGCCACATGCCACTTTTTGGGATTCG
CGGCAGACACTGTCGCTCCCAGATGTTGATCACACAAAGACCACACATTC
ACACGCCGCCCATAAAACGCGCCAGCCAAAATCCCGAAGCGTGTTCAGGG
TACATTCGGCGGTGGTACGCAGTTTTTTTGGCAAGAACCGAGCGAGTCCC
CCCCTCCCACTTGTTGTACCCAGTCTAGTATCATGTATGACAGTTCTCCA
CAAAACCCCTGGCACTGCAACCCCCCCCCTACCCCGCCCGCCTCTCTCTC
GCCCGCGCCGCTTCGTCTCGGGCCGGACTGCCCGCGGCAGGAGAGCCGCA
AGCACTACAACCAGCTGGAGGAGGCGCGCAAGCAGCAGCACGCGAGGAAG
CTCAAGCTCGAGGCCCAAGAGGTGGCTCTCGGGGAGCGAGATCACGTCAC
CGCCACCATGGGAGACGGGCTGTTCTTGGGTGAGAGAAGCGACGGGGCTG
CCGGGGCCGGGGCTGCCTTACGACCGCAACGTGCTTCGTGCGGCGTTTTT
GATTCCCACGCGCGCGGGGGGGGTGGATTGTGGATTGCTAGTAGAGGCTG
GCACGGCACCGTCCAATGTTTTTTTGTCAAGAGGGGCGCGGCGGCGATGT
GCTCGATTGTAGGCGTGGCCCTGCGACACTATCAATAGACCCAGTGCTCC
GTCGAACCATATTGCCACTGCTGTCTGCCCTGTACTACTACCGAACGAAA
CTGTTGTGTAAGGGGGTGATGCAACGCTCTAGACTATTCATAATGTGCTG
TGGAGTCCTGTATATGTAGCTTCGCGGCTACGAACCGGTGTGGACGGCGG
GTAAGCCTTGCAGGCCCTGCGGTGCATGTTTTGTTCACGAGCAAGTCGCG
CTGCTGCGGTAAACCAACGTGGCACCCTCCCGTAGTTTCGTTTTGATGAT
GCACATCATCAGTAGGCCACCCAGCATGTACCACATGATATCACGTGAGA
ACCAATGTAGACGCTTGCAAACCAAACCAATCGCGCTTGCATACCACTCT
ATCTAGTAACCATTCGAAGACGACGACAATAACAACAACAACAACAACAA
CAACAACAACAACAGACAGCCTTGCTGGGGAGGGGCTCGACGGAGCAGGA
GGAGAGCCGGGGGCGAACGGGAACGCGCCTGCGGCCGTTCCGGCGGGGAT
GAGGCAGATGCTCAACATACCCGCACCGCTGCCGCAGCCCCAGAGCAACC
AGGTTTGTTTGCGTAACGGCGTGTGCATCCGCAGCAGCAGTGGCAGCAGC
ACGTAGCAGTCTGATTGGACGAGAGTCTTGACGTTGTTGTTTTTTTTTAC
CGTGCCGATGTCAACAGCTTTTTTGTGTTTCGTACGACGGAAGGAAGCAT
ACCACGATTTAGAGTAGATATATCTGTAGATGCGTGCGATCGGGCTTGTG
TGTTGGCCCGTTTGCGTCTGACTGTCGATTGCGGACTTACCACTCCCGTG
CCGTCAGTTTTGCTCTCGGTGTGGCTATTTTGTCGTTATAATAGTGTTGT
CTGCTCCACAATCAGTGAAGATCGACGAACGGATTTCCGTAGTAATCTTT
TAGTCTCAGGTTACGGTACAATTGAAATCGGAATACTTGTTCGAAATATA
TTGCGCTTAGTTTAACAGCTACACATGGGCTGGTGGTAAACACTGAACTT
TGATTTACAGCTCATTATAACCCCCACCACGCCACCGGTCGCGCCCCCAT
CCCTCTCGCGGTTACACATTGCTAAAGTCCAAATTTCCGTGCTGATCTGG
TCGTTTCTTTTTTTTCGGCAGGACACGCGAAGACGGTTCGCCTCGATGTC
GGTGACGGAGCGGCGTCCTCGCATGCAGAAGGCCGCCGCGGCGCCAGACC
GAGCGCTCGGGGCCAAGCGGAACCGGGTGGAGATGTTGGGCAGCCTGTTC
TAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:494835..499737+

>mRNA_E-siliculosus-1a_M_contig86.16674.1 ID=mRNA_E-siliculosus-1a_M_contig86.16674.1|Name=mRNA_E-siliculosus-1a_M_contig86.16674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1818bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:494835..499737+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATGATGAACTGGTGTGTGTGCTCTGCAAGGGCGCGCAGGATGAAGC
GAGCAACATCACGCAGCAAAAACTGGTCGTCAACAACAAGTGTGGACACC
GCTTATGGATGATGAACTGGTGTGTGTGCTCTGCAAGGGCGCGCAGGATG
AAGCGAGCAACATCACGCAGCAAAAACTGGTCGTCAACAACAAGTGTGGA
CACCGCTTCCACCAAGCTTGCGCGGAGAAGGAGCTTCTTCGTCGCAAGAC
GTTTCCGTGTCCAGCGTGTCAAGTACAGCCACCAAGCTTGCGCGGAGAAG
GAGCTTCTTCGTCGCAAGACGTTTCCGTGTCCAGCGTGTCAAGTACAGGT
GCGTCGAGCCGGCTTGACCGAAAAGACTCTGGACGAGCTAGAGGTCGCGA
GGGATATCACCGTGCGCAAGCGGATAACAAAGATGTGCGTCGAGCCGGCT
TGACCGAAAAGACTCTGGACGAGCTAGAGGTCGCGAGGGATATCACCGTG
CGCAAGCGGATAACAAAGATCTTCAACCGTTCGGAGGAGGATTTCGGCGG
GGACCTCCGCGCCTACAACGACTACCTTGAGACCATGGAGGACGTGATCT
ACGGGCTCTGCAGCGGCGACAAGGGGGAGGCGGACAGGGCCCAGGCCACC
GTGAGGGAGTACGAGGACAGGCACCGGGGCGAGATCACCAAAAACGCCGC
CAGGAACTTCAACCGTTCGGAGGAGGATTTCGGCGGGGACCTCCGCGCCT
ACAACGACTACCTTGAGACCATGGAGGACGTGATCTACGGGCTCTGCAGC
GGCGACAAGGGGGAGGCGGACAGGGCCCAGGCCACCGTGAGGGAGTACGA
GGACAGGCACCGGGGCGAGATCACCAAAAACGCCGCCAGGAAGGTGGACC
GAGAAAAGGTCGTGGAGGAACAGCTGGCGGCGCTAAGACAACAACAGGGT
GGACCGAGAAAAGGTCGTGGAGGAACAGCTGGCGGCGCTAAGACAACAAC
AGGAGAGCCGCAAGCACTACAACCAGCTGGAGGAGGCGCGCAAGCAGCAG
CACGCGAGGAAGCTCAAGCTCGAGGCCCAAGAGGTGGCTCTCGGGGAGCG
AGATCACGTCACCGCCACCATGGGAGACGGGCTGTTCTTGGGAGAGCCGC
AAGCACTACAACCAGCTGGAGGAGGCGCGCAAGCAGCAGCACGCGAGGAA
GCTCAAGCTCGAGGCCCAAGAGGTGGCTCTCGGGGAGCGAGATCACGTCA
CCGCCACCATGGGAGACGGGCTGTTCTTGGACAGCCTTGCTGGGGAGGGG
CTCGACGGAGCAGGAGGAGAGCCGGGGGCGAACGGGAACGCGCCTGCGGC
CGTTCCGGCGGGGATGAGGCAGATGCTCAACATACCCGCACCGCTGCCGC
AGCCCCAGAGCAACCAGACAGCCTTGCTGGGGAGGGGCTCGACGGAGCAG
GAGGAGAGCCGGGGGCGAACGGGAACGCGCCTGCGGCCGTTCCGGCGGGG
ATGAGGCAGATGCTCAACATACCCGCACCGCTGCCGCAGCCCCAGAGCAA
CCAGGACACGCGAAGACGGTTCGCCTCGATGTCGGTGACGGAGCGGCGTC
CTCGCATGCAGAAGGCCGCCGCGGCGCCAGACCGAGCGCTCGGGGCCAAG
CGGAACCGGGTGGAGATGTTGGGCAGCCTGTTCTAGGACACGCGAAGACG
GTTCGCCTCGATGTCGGTGACGGAGCGGCGTCCTCGCATGCAGAAGGCCG
CCGCGGCGCCAGACCGAGCGCTCGGGGCCAAGCGGAACCGGGTGGAGATG
TTGGGCAGCCTGTTCTAG