mRNA_E-siliculosus-1a_M_contig86.16662.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16662.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16662.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16662.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.920e-10
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = -1 
Query:   76 NSHPLGGDPDLPDFQAWARTMLRRRLTGR 162
            NSHPLGGDPDLPDFQAWARTMLRRRL  R
Sbjct:   84 NSHPLGGDPDLPDFQAWARTMLRRRLVHR 112
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16662.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.460e-10
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:   85 NSHPLGGDPDLPDFQAWARTMLRRRL 162
            NSHPLGGDPDLPDFQAWARTMLRRRL
Sbjct:   82 NSHPLGGDPDLPDFQAWARTMLRRRL 107
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16662.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.370e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = -1 
Query:   46 NSHPLGGDPDLPDFQAWARTMLRRRLTGRRGC-SFKSSLV 162
            NSH LGGDPDL DFQAWARTMLRR L   R   +++++LV
Sbjct:   83 NSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAALV 122
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16662.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.890e-5
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = -1 
Query:   85 NSHPLGGDPDLPDFQAWARTMLRRRL 162
            NSHPLGGDP+L +FQ WART+LRR +
Sbjct:   85 NSHPLGGDPNLYNFQTWARTVLRRGM 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LFQ2_ECTSI2.920e-1093.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTC4_9PHAE5.460e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE84_9PHAE2.370e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE5.890e-573.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:375620..376641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size162
Model size164
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936305.6924875-CDS-E-siliculosus-1a_M_contig86:375619..3757061622936305.6924875-CDS-E-siliculosus-1a_M_contig86:375619..375706Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 375620..375706 +
1696251017.387473-CDS-E-siliculosus-1a_M_contig86:375619..3757061696251017.387473-CDS-E-siliculosus-1a_M_contig86:375619..375706Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 375620..375706 +
1622936305.7120647-CDS-E-siliculosus-1a_M_contig86:376566..3766411622936305.7120647-CDS-E-siliculosus-1a_M_contig86:376566..376641Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 376567..376641 +
1696251017.404413-CDS-E-siliculosus-1a_M_contig86:376566..3766411696251017.404413-CDS-E-siliculosus-1a_M_contig86:376566..376641Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 376567..376641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16662.1prot_E-siliculosus-1a_M_contig86.16662.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 375620..376641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16662.1

>prot_E-siliculosus-1a_M_contig86.16662.1 ID=prot_E-siliculosus-1a_M_contig86.16662.1|Name=mRNA_E-siliculosus-1a_M_contig86.16662.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=54bp
MSATPADLSTHRSLNHQGGLERTASATCQAPAQHRPRPGLEVREVGIPAE
RVRV
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mRNA from alignment at E-siliculosus-1a_M_contig86:375620..376641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16662.1 ID=mRNA_E-siliculosus-1a_M_contig86.16662.1|Name=mRNA_E-siliculosus-1a_M_contig86.16662.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1022bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:375620..376641+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGCAACACCGGCGGACTTGTCTACCCATCGCTCCCTAAACCACCA
AGGAGGACTTGAAAGAACAGCCTCGGCGACCTGTCAGGTGCTTATGGATG
CATGCGACGTGTAAATGCGTGTGTGTGACGTGCAGAGGAATGTCGGCCGG
AAGGACCCACAAACAGCAGTCAGTGCGCTACCTTATTGGAGCTGCATAAT
AGACCACTTGCAATTGGACCCCCCGCACCAAAAAAATGCCAAAAAAATGC
TCTGGGCGGAGGGGTGCGGGGGGTCCGATTGCAAGTGGTCTATTATGCAG
AGGTAGAGCACTGACTGTGAAAAGTAGGAAGAGGCGATGTGTGTACAAAA
ATAGCTTTCTTTATCTTGGAGCGCTTCTCTCTGGGTGCTCTTCCCTGTCC
CGCTTCACACAGAAAAGTTAGAAGTAGGGTTCGATGTGCAGTCGCACCCT
TTTGGCCATGCCAACAACAATAAGATAGGCGGTTCTTGCGCAGCCTGCTG
CATGTAGGTACAGCAGTAGTAGTCCTTTGGTGTGCTGTGGTGATGATGCC
ACACAAACAAGATCCATCCCCGATCCCAATCTACCCTTCCTTCCTTGTCG
CGCGGAGGGTGCCGAGCGGCAGCCATAATAATTATTACTAGGGTTTTCCG
CGAAGGATATCACAATAATAAGATTAAGATTACACGAAGGTCGATTGACG
GGTCTCTCTCTCTCTATCTCTTGCTTATTGAGTATTCAAAGTGGCAGCAA
CAAGTCATCAGCCGATGTCGACTCGCGACCGATCGTGGATGACGTCGCCG
GTCGACCATCTTCGGGGGTGGCTGCCTGTATTGAAATAAATCCCGACGAA
GTTTTTTTTGCCAATCAGCTATCTATGTAACTGCGTGCCACATATTAATC
TCTTTCTCGGCCGCCCGCCAGGCGTCGGCGTCGTCTCTGTGCACCAGGCG
CCTGCGCAGCATCGTCCGCGCCCAGGCCTGGAAGTCCGGGAGGTCGGGAT
CCCCGCCGAGCGGGTGCGAGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:375620..376641+

>mRNA_E-siliculosus-1a_M_contig86.16662.1 ID=mRNA_E-siliculosus-1a_M_contig86.16662.1|Name=mRNA_E-siliculosus-1a_M_contig86.16662.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=324bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:375620..376641+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGCAACACCGGCGGACTTGTCTACCCATCGCTCCCTAAACCACCA
AGGAGGACTTGAAAGAACAGCCTCGGCGACCTGTCAGATGTCTGCAACAC
CGGCGGACTTGTCTACCCATCGCTCCCTAAACCACCAAGGAGGACTTGAA
AGAACAGCCTCGGCGACCTGTCAGGCGCCTGCGCAGCATCGTCCGCGCCC
AGGCCTGGAAGTCCGGGAGGTCGGGATCCCCGCCGAGCGGGTGCGAGTTG
CGCCTGCGCAGCATCGTCCGCGCCCAGGCCTGGAAGTCCGGGAGGTCGGG
ATCCCCGCCGAGCGGGTGCGAGTT
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