mRNA_E-siliculosus-1a_M_contig86.16659.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16659.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16659.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.130e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD
Sbjct:  702 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 804
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.560e-53
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D DAARRFKKGL VRTSGLLQ+RHA RINAVMVTTS EAMAVGGKIVPVLGEVNRIKSELRKNGTDG LGIEKLDSGDAYL FEASRVWYRDGFWALGTLILD
Sbjct:  644 DLDAARRFKKGLLVRTSGLLQRRHAHRINAVMVTTSDEAMAVGGKIVPVLGEVNRIKSELRKNGTDGELGIEKLDSGDAYLSFEASRVWYRDGFWALGTLILD 746
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5KBM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM1_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.740e-43
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRV 264
            D DAARRF+KGLFVRTSGLLQQRHADRINAVMVTTS+EAMAVGGKIVP+LGEVNRIKSELRKNGTDG LGIEKLDSGDAYL FEASRV
Sbjct:  415 DVDAARRFEKGLFVRTSGLLQQRHADRINAVMVTTSEEAMAVGGKIVPILGEVNRIKSELRKNGTDGELGIEKLDSGDAYLSFEASRV 502
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 6.240e-41
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D ARRFKKG+FVRTSG+LQQR+ADRI+AVMVT+S EA AVGGKIVPVL EV+R+K+ELR     G LGI+ L +GDAYLCF+A R WYRDGFWALG +ILD
Sbjct:   93 DADCARRFKKGIFVRTSGMLQQRYADRIDAVMVTSSDEASAVGGKIVPVLCEVDRVKAELRTG--QGDLGIDSLHTGDAYLCFDAERTWYRDGFWALGAIILD 193
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.650e-39
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D AR+FKKG+FVR SG+LQQR+ADRI+AVMVT   EA AVGGKIVPVLGEV+R+K+ELR     G LGIE L +GDAYLC +A R WYRDGFWALG LILD
Sbjct:  692 DADCARKFKKGIFVRASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTG--QGKLGIESLRTGDAYLCLDAERTWYRDGFWALGALILD 792
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.050e-39
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D ARRFK G+FVR SGLLQQR+ADRI+AVMVT+S EA AVGGKIVPVL EV+R+K+ELR     G LGI+ L +G+AYLCF+A R WYRDGFWALGTL LD
Sbjct:  678 DADCARRFKNGIFVRASGLLQQRYADRIDAVMVTSSDEASAVGGKIVPVLCEVDRVKAELRTG--QGDLGIDSLRTGNAYLCFDAERTWYRDGFWALGTLTLD 778
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5KCL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.750e-38
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D ARRF KG+FVR SG+LQQR+ADRI+AVMVT+  EA AVGGKIVPVL EV+R+K+ELR     G +GIE L +GDAYLCF+A R WYRDGFWALG LILD
Sbjct:  109 DVDCARRFIKGIFVRVSGMLQQRYADRIDAVMVTSCDEASAVGGKIVPVLCEVDRVKAELRTR--QGDVGIESLRTGDAYLCFDAGRTWYRDGFWALGALILD 209
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.000e-38
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D AR+FKKG+FVR SG+LQQR+A+RI+AVMVT+  EA AVGGK+VPVL EV+R K+ELR     G LGIE L +GDAYLCF+A R WYRDGFWALG LILD
Sbjct:  500 DADCARKFKKGIFVRASGMLQQRYANRIDAVMVTSCDEASAVGGKVVPVLCEVDRAKAELRTG--QGELGIEALRTGDAYLCFDAERTWYRDGFWALGALILD 600
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: D7FWV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV6_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.000e-37
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D AR+FKKG+FVR SG+LQQR+A+RI+AVMVT+  EA AVGGK+VPVL EV+R K+ELR     G  GIE L +GDAYLCF+A R WYRDGFWALG LILD
Sbjct:  500 DADCARKFKKGIFVRASGMLQQRYANRIDAVMVTSCDEASAVGGKVVPVLCEVDRAKAELRTG--QGEFGIEALRTGDAYLCFDAERTWYRDGFWALGALILD 600
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.700e-37
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVLGEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTLILD 309
            D D AR+FKKG+FVR SG+LQQR+ADRI+AVM T   EA AVGGKIVPVLGEV+R+K+ELR       LGIE L +GD YLC +A R WYRDGFWALG LILD
Sbjct:  242 DADCARKFKKGIFVRASGMLQQRYADRIDAVMATGCDEAFAVGGKIVPVLGEVDRVKAELRTG--QEKLGIESLRTGDTYLCLDAERTWYRDGFWALGALILD 342
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFQ2_ECTSI2.130e-60100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTC4_9PHAE1.560e-5393.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM1_9PHAE2.740e-4393.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWL4_9PHAE6.240e-4172.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE1.650e-3971.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNU8_9PHAE3.050e-3971.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL4_9PHAE1.750e-3870.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV89_ECTSI5.000e-3869.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWV6_ECTSI1.000e-3768.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L909_9PHAE1.700e-3768.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:361223..361531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size309
Model size309
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E3IK@1,2SAKM@2759
Seed eggNOG ortholog2880.D8LFQ2
Seed ortholog evalue4.3e-52
Seed ortholog score210.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936313.3662899-CDS-E-siliculosus-1a_M_contig86:361222..3615311622936313.3662899-CDS-E-siliculosus-1a_M_contig86:361222..361531Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 361223..361531 +
1696251020.676826-CDS-E-siliculosus-1a_M_contig86:361222..3615311696251020.676826-CDS-E-siliculosus-1a_M_contig86:361222..361531Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 361223..361531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16659.1prot_E-siliculosus-1a_M_contig86.16659.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 361223..361531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16659.1

>prot_E-siliculosus-1a_M_contig86.16659.1 ID=prot_E-siliculosus-1a_M_contig86.16659.1|Name=mRNA_E-siliculosus-1a_M_contig86.16659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp
DPDAARRFKKGLFVRTSGLLQQRHADRINAVMVTTSKEAMAVGGKIVPVL
GEVNRIKSELRKNGTDGGLGIEKLDSGDAYLCFEASRVWYRDGFWALGTL
ILD
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mRNA from alignment at E-siliculosus-1a_M_contig86:361223..361531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16659.1 ID=mRNA_E-siliculosus-1a_M_contig86.16659.1|Name=mRNA_E-siliculosus-1a_M_contig86.16659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=309bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:361223..361531+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACCCGGACGCTGCTCGCAGGTTCAAGAAGGGTCTATTCGTTCGCACGAG
CGGCTTGTTACAGCAGAGGCACGCCGACAGGATCAACGCCGTAATGGTCA
CTACAAGCAAGGAGGCCATGGCCGTGGGGGGTAAGATCGTACCCGTCCTC
GGCGAAGTTAATCGCATCAAGTCGGAGCTGCGGAAGAATGGTACCGATGG
GGGGCTTGGCATCGAGAAACTCGACAGCGGAGATGCCTACCTTTGTTTCG
AGGCTAGCCGGGTTTGGTACCGAGACGGGTTCTGGGCCCTGGGGACGCTC
ATCCTAGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:361223..361531+

>mRNA_E-siliculosus-1a_M_contig86.16659.1 ID=mRNA_E-siliculosus-1a_M_contig86.16659.1|Name=mRNA_E-siliculosus-1a_M_contig86.16659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:361223..361531+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACCCGGACGCTGCTCGCAGGTTCAAGAAGGGTCTATTCGTTCGCACGAG
CGGCTTGTTACAGCAGAGGCACGCCGACAGGATCAACGCCGTAATGGTCA
CTACAAGCAAGGAGGCCATGGCCGTGGGGGGTAAGATCGTACCCGTCCTC
GGCGAAGTTAATCGCATCAAGTCGGAGCTGCGGAAGAATGGTACCGATGG
GGGGCTTGGCATCGAGAAACTCGACAGCGGAGATGCCTACCTTTGTTTCG
AGGCTAGCCGGGTTTGGTACCGAGACGGGTTCTGGGCCCTGGGGACGCTC
ATCCTAGACGACCCGGACGCTGCTCGCAGGTTCAAGAAGGGTCTATTCGT
TCGCACGAGCGGCTTGTTACAGCAGAGGCACGCCGACAGGATCAACGCCG
TAATGGTCACTACAAGCAAGGAGGCCATGGCCGTGGGGGGTAAGATCGTA
CCCGTCCTCGGCGAAGTTAATCGCATCAAGTCGGAGCTGCGGAAGAATGG
TACCGATGGGGGGCTTGGCATCGAGAAACTCGACAGCGGAGATGCCTACC
TTTGTTTCGAGGCTAGCCGGGTTTGGTACCGAGACGGGTTCTGGGCCCTG
GGGACGCTCATCCTAGAC
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