mRNA_E-siliculosus-1a_M_contig86.16656.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: A0A6H5KY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY55_9PHAE) HSP 1 Score: 1164 bits (3012), Expect = 0.000e+0 Identity = 737/968 (76.14%), Postives = 785/968 (81.10%), Query Frame = 1
Query: 67 MMSGNNHSMYGLTGAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAEGGMQELNNATIVGF------SSPQQQSGGQVWQQVVGKTRTSCNFCIARKKGCEYIEIDGKKQQCKLCKEKQQECVFEMKPPRTGKRREGASAAQRNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSKRKAPSAVMKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSAEEQGSWRGGAESMEGVFSGVIEIQKFGSNTQESKAFSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAVDGLCTKDVPTAKAYTIMAMVYAWQDNSPLFAEYLGRAQKLVDSLDSSEEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMMSDAGLFHMVRYYTNGVFKAFWRDLHEHNSDLPATTRFAEKHRHECATIEGMANSREGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRYGPLKHYVHCLVMILKRPATLGADKGSYEKLRKLYNGLDIAGPDIEAAEDMDMARLCNHQFCIGMAWIHQEKMLKMKRAXXXXXXXXXXXXXXXXXXXGRGADGRLPGGALGPVACVNEEGAATSTPGDG-----------SGXXXXXXXXXXXXPHLPSPGRGGGNRIDHFPQAAAAXXXXXETGAADAGDLYSTSPFPQEQSPLPHHAPLSQCRLDDPVAAAPFDGTGASMFPPKQEGTEPFPQALGGSAGGGAVSPDMFPQGWTWNDDLQQGSHQQQRSLGRGDLAALHPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNAAGPTVAA--GAAAPQGMEGTEMPAELFEFAQNKVRQQQQQESLGHRDQFPPLQELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPGG--AGGEGDSLHNILFSSGEE 2907
MMSGN+H+MYGL+ AQ++XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R EGG Q+LNNATI G SSPQ GGQV +Q VGKTRTSC+ CI RKKGCEY+EIDGKKQQCKLCKE+Q+ECVF MKP RT KR+ GASA XXXXXXXXXXX RKAPSAVMKRAR+GPSAATGLVG+EENVFVGDFFDRLGFFPL +Q+TV RA+TEV+ R AEEQ S+RGGAES EGVF+G I+KFGSNTQESKA SC++WCTIALGAMTNNL + TVRRYVKLAEEA+DGLCT+DVPTAKAYTIM+MVYAWQDN LFA+YLGRAQ+LVDS+D+SEEIPM +DIMKELERVRVLHYTEDEDVI+KCCYEADGEPPTMTLAMMSDAGLFHMVRYYTNGVFKAFWRDLH+ NSDLP TTRFA+KHRHEC+ IE +ANSRE LKNSAG LYIRAAMQFMRLPLKT+P EALKSTIVLT+IICQVPGMVRYGPLKHYVHCLVM+LKRPA LG DKGSYEKLRKLYN LDIAGPDIEAAEDMDMA LC HQFC GMAWIHQEKM+KMKRA XXXXX G GA G L GGALGPVACVNE GAATSTP + XXXXXXXXXXXXPHLPSPG NRIDHFP AAAA E GA GDLY+T PFPQEQSPLPHHAPLSQCR+DDPVAAAPFDGTGASMFPPKQ GTEPFPQA GGSAGGG S DMFPQGW WND LQQGSHQQQRSLGRGDLA LHP G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GAAA QG+EGTEMP ELFEFAQNKVRQQQQQESL QELLG+D HDDSRSVPEI MDSDAEEFTLV G AGGEG+SLH +LFS GEE
Sbjct: 1 MMSGNHHTMYGLSRAQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV----HRVEGGTQQLNNATIKGTQHEPGSSSPQ--PGGQV-RQFVGKTRTSCDLCIRRKKGCEYVEIDGKKQQCKLCKEQQRECVFFMKPRRTAKRKGGASAGX---------------------XXXXXXXXXXXXXXXRKAPSAVMKRARMGPSAATGLVGYEENVFVGDFFDRLGFFPLADQQTVRRALTEVVLRPAEEQSSFRGGAESDEGVFTGAPAIRKFGSNTQESKALSCIMWCTIALGAMTNNLSLLTVRRYVKLAEEAIDGLCTEDVPTAKAYTIMSMVYAWQDNVALFAKYLGRAQELVDSMDASEEIPM-ASDIMKELERVRVLHYTEDEDVINKCCYEADGEPPTMTLAMMSDAGLFHMVRYYTNGVFKAFWRDLHKSNSDLPETTRFADKHRHECSAIEEIANSRERLKNSAGGLYIRAAMQFMRLPLKTNPAEALKSTIVLTDIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGGDKGSYEKLRKLYNVLDIAGPDIEAAEDMDMAMLCKHQFCNGMAWIHQEKMIKMKRAQDAAEAAXXXXXTTGTAVPGLGAGGGLSGGALGPVACVNEGGAATSTPXXXXXXXXXXXXXXTXXXXXXXXXXXXXPHLPSPGGXXXNRIDHFPHAAAAAEAAAEVGAG-GGDLYATPPFPQEQSPLPHHAPLSQCRVDDPVAAAPFDGTGASMFPPKQGGTEPFPQARGGSAGGGDASADMFPQGWIWNDYLQQGSHQQQRSLGRGDLATLHPRGGPSAAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAQQGVEGTEMPVELFEFAQNKVRQQQQQESL---------QELLGMDEHDDSRSVPEIGVMDSDAEEFTLVSAGLGAGGEGESLHRLLFSPGEE 929
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: D8LBT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT4_ECTSI) HSP 1 Score: 968 bits (2502), Expect = 0.000e+0 Identity = 600/826 (72.64%), Postives = 618/826 (74.82%), Query Frame = 1
Query: 469 MKPPRTGKRREGASAAQRNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSKRKAPSAVMKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSAEEQGSWRGGAESMEGVFSGVIEIQKFGSNTQESKAFSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAVDGLCTKDVPTAKAYTIMAMVYAWQDNSPLFAEYLGRAQKLVDSLDSSEEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMMSDAGLFHMVRYYTNGVFKAFWRDLHEHNSDLPATTRFAEKHRHECATIEGMANSREGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRYGPLKHYVHCLVMILKRPATLGADKGSYEKLRKLYNGLDIAGPDIEAAEDMDMARLCNHQFCIGMAWIHQEKMLKMKRAXXXXXXXXXXXXXXXXXXXGRGADGRLPGGALGPVACVNEEGAATSTP------------GDGSGXXXXXXXXXXXXPHLPSPGRGGGNRIDHFPQAAAAXXXXXETGAADAGDLYSTSPFPQEQSPLPHHAPLSQCRLDDPVAAAPFDGTGASMFPPKQEGTEPFPQALGGSAGGGAVSPDMFPQGWTWNDDLQQGSHQQQRSLGRGDLAALHPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNAAGPTVAAGAAAPQGMEGTEMPAELFEFAQNKVRQQQQQESLGHRDQFPPLQELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPG-GAGGEGDSLHNILFSSGEE 2907
MKP RT KR+EGASAAQRN GXXXXXXXXXXXXXXXXXXXXXXXXXXXX S+RKAPSAVMKRAR GPSAATGLVGF+ENV+V DFFDRLGFFPL NQKTV RAITEVLFR AEEQGS RGGAESMEGVFSG + I KFGSNTQESKAFSCMLWCTIALGAMTNNL+V+TVRRY+KLAEEAVDGLCT+DVPTAKAYTIMAMVYAWQDNS LFAEYLGRAQKLVDSLD+SEEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAM+SDAGLFHMVRYYTNGVFKAFWRDLHE NSDLPATTR EGLKNSAGALYIRAAMQFMRLPLKTDPVEALKST+VLT+IICQVPGMVRYGPLKHYVHCLVM+LKRPA LG DKGSYEKLRKLYN LDIAGP+IEAAEDMDMA LC HQFC GMAWIHQEKMLK+KRA XXXXXXXXXXXXXXXX G GA G LPGGALGPVACVNEEGAATSTP GDGS XXXXXXXXXXXX HLPSP RIDHFPQ XXXXX A GDLYST PFPQEQSPLPHHAPLSQCRLDDP+AAAPFDGTGASMFPPKQEGTEPF PQGMEGTEMPAELFEFAQNK ELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPG GAGGEGDSLH+ILFS GEE
Sbjct: 1 MKPQRTAKRKEGASAAQRNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRKAPSAVMKRARFGPSAATGLVGFKENVYVSDFFDRLGFFPLANQKTVRRAITEVLFRPAEEQGSLRGGAESMEGVFSGALAIHKFGSNTQESKAFSCMLWCTIALGAMTNNLKVATVRRYIKLAEEAVDGLCTEDVPTAKAYTIMAMVYAWQDNSALFAEYLGRAQKLVDSLDASEEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMLSDAGLFHMVRYYTNGVFKAFWRDLHEVNSDLPATTR-------------------EGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTVVLTKIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGVDKGSYEKLRKLYNSLDIAGPNIEAAEDMDMAMLCKHQFCNGMAWIHQEKMLKVKRAQAXXXXXXXXXXXXXXXXPGLGAGGGLPGGALGPVACVNEEGAATSTPRGNGSSARGLAGGDGSXXXXXXXXXXXXXXHLPSPXXXXXXRIDHFPQXXXXXXXXXXXXXA-GGDLYSTPPFPQEQSPLPHHAPLSQCRLDDPLAAAPFDGTGASMFPPKQEGTEPF------------------------------------------------------------------------------------------------------------PQGMEGTEMPAELFEFAQNK--------------------ELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPGAGAGGEGDSLHSILFSPGEE 678
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.480e-23 Identity = 110/434 (25.35%), Postives = 187/434 (43.09%), Query Frame = 1
Query: 649 MKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSAEEQ-------------GSWRGGAES--MEGVFSGVIEIQKFGSNTQESKAFSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAVDGLCTKD--VPTAKAYTIMAMVYAWQDNSPLFAEYLGRAQKLVDSLDSSEEIPMELTD---IMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMMSDAGLFHM-------------------VRYYTNGVFKAFWRDL-----HEHNSDLPA----TTRFAEKHRHECATIEGMANSREGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRYGPLKHYVHCLVMILKRPATLGADKGSYEKLRKLYNGL--DIAGPDIEAAEDMD-MARLCNHQFC 1797
+KRARL PS ATGL+G +EN ++GDFF +GF P+T++ + +A+ +FR+ +E+ G G ES + G ++ + E+ A +C+LW T+ +G + S+V YV LA EA+ +C D TA+A+T MA+ + N F +Y+ A+ ++++L E++P +L D +K + + + DE+ I + + AM + L H V G F D+ + +++ P + +FA + EC + + E +K G LY + M + + L+ A+ +I PG+ R H HC + L L YE LR+ YN + + + + AE+ M +C H FC
Sbjct: 30 LKRARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVSTMFRTMQERDPEFPGPEAGGVVGGGHGWGESALVPGXXXXXXLVRA--ESAVENAAAACVLWSTVGVGCLIRGRPKSSVEGYVHLAREALS-VCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPP-EKVPADLLDTHLFVKACDMLEGYSHQVDEEYIKAASGTLE------SCAMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNEDSSDVGSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPE-VKGGVGELYFHSIMAYANV-LQGRQSWAMDGLWRCADIFLTSPGICRLTAWTHLAHCTLACL----LLSGRHEKYESLRQAYNSVMDEPSAVRVPPAEEWTGMECICKHVFC 447
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.320e-20 Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 643 AVMKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSAEEQGSWRGGAESMEGVFSGVIEIQKFGS----------------NTQESKAFSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAVDGLCTKD--VPTAKAYTIMAMVYAWQDNSPLFAEYLGRAQKLVDSLDSSEEIPMELTD 1182
A+ RARL PS ATGL+G +EN ++GDFF +GF P+T++ + +A+ +FR+ +E+ G E+ GVF G Q +G N E+ A +C+LW T+ +G + S+V YV+LA EA+ +C D TA+A+T MA+ + N F +Y+ A+ ++++L E++P +L D
Sbjct: 16 ALPARARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVNTMFRTMQERDPEFAGPEAG-GVFGGG---QGWGEHALVPGGGGGGLARAENAIENAAAACVLWSTVGVGCLIRGRPKSSVEGYVRLAREALS-VCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPQ-EKVPADLLD 207
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.550e-20 Identity = 93/314 (29.62%), Postives = 135/314 (42.99%), Query Frame = 1
Query: 349 TRTSCNFCIARKKGCEYIEIDGKKQQCKLCKEKQQ-ECVFEMKP--------PRTGKRREGASAAQRNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSKRKAPSA----VMKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSAEEQGSWRGGAESMEGVFSGVIEIQKFG---------SNTQESKAFSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAV-DGLCTKDVPTAKAYTIMAMVYAWQDNSPLFAE---YLGRAQKLVDSLDSSEEIPMELTDIMKELERVRV 1212
T SC FC RK+ C D ++ +C LC EK Q C + +KP P +R + + R P+ +KR RL S ATGLVG +EN F+G FF LG PLT + TV A+ EV+ R Q R G MEG+ E ++ G +T CM+WC IALGA+ + V V YV+LA E++ D + V A+AY IM+ +++ + + + YL A +V L E++P EL ++ ++RV
Sbjct: 54 TYKSCTFCAKRKRSC-----DSRRPRCSLCIEKNQPHCHYPLKPLPKRAAAKPTAARRLXXXXXXXSDCSISSGDASKAKRLAEAHEVASYGAGSVLATVDTRSMPTVRGRMSLKRCRLSASPATGLVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVMMRQCGGQAYSRTGGSGMEGL----AEDEEKGWCGGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVTGYVQLARESLADCFDGRSVEHARAYLIMSFLHSIIHDKAIDDKNERYLSFAVNIVSKL-RPEDVPKELGLMLVTTNKLRV 357
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Match: D7FTC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC5_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 3.660e-14 Identity = 77/264 (29.17%), Postives = 118/264 (44.70%), Query Frame = 1
Query: 649 MKRARLGPSAATGLVGFEENVFVGDFFDRLGFFPLTNQKTVGRAITEVLFRSA-----------------------------EEQGSWRGGAESMEGVF---SGVIEIQKFGSNTQESKA--FSCMLWCTIALGAMTNNLQVSTVRRYVKLAEEAVDGL---CTKDVPTAKAYTIMAMVYAWQDNSPLFAEYLGRAQKL-----VDSLDSSEEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMMSDAGL 1314
+KR RLG S ATGLVG +EN F+GDFF +GF PLT Q TV A+ +LF S EE+ + GG M V S V ++++ Q S + + M WC +ALGA+T V +V Y++LAE A+ G D A+A+T+M +Y + +S F +A++ + D+SEE + T + + V ++ + DG+ + L +DA +
Sbjct: 32 LKRGRLGMSLATGLVGTQENAFLGDFFGCMGFLPLTCQSTVREAMVRILFSSDNDNNKGFSSSTGHTWPHPVAPASAMMAMDEEKFCYGGGEGDMSIVSTARSPVSSMKQWEQQQQLSPSDPSTSMFWCAVALGALTQGRPVRSVAPYIRLAEAALVGNEEGAFSDA--ARAWTLMGYLYGFCGDSAKFRNCQEQAERCFHDGRTEGEDTSEEEAADATTASRLSQFVMQSYHRFGQAFFADVSATGDGDEASTALERAADASI 293 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig86.16656.1 >prot_E-siliculosus-1a_M_contig86.16656.1 ID=prot_E-siliculosus-1a_M_contig86.16656.1|Name=mRNA_E-siliculosus-1a_M_contig86.16656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=948bp MMSGNNHSMYGLTGAQQEHHQQHPQHQHYAHPSQQHQQPPHYNYSSSGSSback to top mRNA from alignment at E-siliculosus-1a_M_contig86:345227..356645+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig86.16656.1 ID=mRNA_E-siliculosus-1a_M_contig86.16656.1|Name=mRNA_E-siliculosus-1a_M_contig86.16656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=11419bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:345227..356645+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:345227..356645+ >mRNA_E-siliculosus-1a_M_contig86.16656.1 ID=mRNA_E-siliculosus-1a_M_contig86.16656.1|Name=mRNA_E-siliculosus-1a_M_contig86.16656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:345227..356645+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |