mRNA_E-siliculosus-1a_M_contig86.16649.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16649.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16649.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16649.1 vs. uniprot
Match: D8LBS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-10
Identity = 37/50 (74.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SRRRDARLLQLRGVERXXXXXXXXXXGDLANDQQPLGSDHVQDDDQQHVA 150
            SRRRD  LLQLRGVER           DLANDQQPLGSDHVQDDDQQHVA
Sbjct:    2 SRRRDDLLLQLRGVERRRRVIC----SDLANDQQPLGSDHVQDDDQQHVA 47
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS7_ECTSI8.760e-1074.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:286085..288399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size288
Model size1476
Exons2
Ec32 orthologEc-27_002850.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16649.1prot_E-siliculosus-1a_M_contig86.16649.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 287273..288399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.8837013-UTR-E-siliculosus-1a_M_contig86:286084..2872721622936310.8837013-UTR-E-siliculosus-1a_M_contig86:286084..287272Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 286085..287272 -
1696251019.5947766-UTR-E-siliculosus-1a_M_contig86:286084..2872721696251019.5947766-UTR-E-siliculosus-1a_M_contig86:286084..287272Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 286085..287272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.9021683-CDS-E-siliculosus-1a_M_contig86:287272..2874791622936310.9021683-CDS-E-siliculosus-1a_M_contig86:287272..287479Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 287273..287479 -
1696251019.6044097-CDS-E-siliculosus-1a_M_contig86:287272..2874791696251019.6044097-CDS-E-siliculosus-1a_M_contig86:287272..287479Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 287273..287479 -
1622936310.9191136-CDS-E-siliculosus-1a_M_contig86:288318..2883991622936310.9191136-CDS-E-siliculosus-1a_M_contig86:288318..288399Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 288319..288399 -
1696251019.6156964-CDS-E-siliculosus-1a_M_contig86:288318..2883991696251019.6156964-CDS-E-siliculosus-1a_M_contig86:288318..288399Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 288319..288399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16649.1

>prot_E-siliculosus-1a_M_contig86.16649.1 ID=prot_E-siliculosus-1a_M_contig86.16649.1|Name=mRNA_E-siliculosus-1a_M_contig86.16649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=96bp
SRRRDARLLQLRGVERRRRAPLLELRGDLANDQQPLGSDHVQDDDQQHVA
RAIAARRVGSVILATPSSEHGRFLRRSACLSVCVLIFAIEFLFVG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig86:286085..288399-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16649.1 ID=mRNA_E-siliculosus-1a_M_contig86.16649.1|Name=mRNA_E-siliculosus-1a_M_contig86.16649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2315bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:286085..288399- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCCGACGACGAGATGCCCGTCTCCTTCAGCTTCGAGGAGTGGAACGACG
ACGACGAGCCCCTCTCCTTGAGCTTCGCGGCGTGAAACGACGAGTGATTG
AAGTGTTCGGTAGGTGACGGACAATTTGATAAATTTATTGTTTTGTTTGG
CATTTCATAATCGGGTGGGAACGAAGCACAAACGAACGCATTATTATTAT
TGTTTACTGTACATGCTTTTTATTGCTATGCGCGCACGCATTTGTCGAGT
CCCACCAAACAACTACCGACAAACACAAGCGAGGAGCAAAAGCCTCCTCC
CCACTCGACTTCCAATATTAGGCAATCGTGTTTTCTTGCGATGTGATGTA
TGGTTGGAAACGGACACATAATACCCGCCGTTTCTCTGTTGGCCGGACAT
CAAGATCGTATGCATACAGAAGTACAAGTGTCTGGTAGGGTATCGGCAGT
GCCACATACGGGGGAGGGGCTTCGTGAGGCGTCAAAAGTGGAACAGCACT
CACTCACAGAAATGTCCTGTAGGGTATCGGGTCAAACCCAACAGAAAAAT
CGGTTTTGTGAGAAGGTCGTACAGAACTCATAGAACGTTCGGGTAGGTTC
ATAAATGCTACATACAGATGTTTTCTGTACGGTATTGGAGTGTCACATCA
TATAACTCATCGAACCGACGTTTCTGTAGGGTTTCGGAGGTACCGCAGAT
CCCCTGCAACGTTCTGTGGGGTAGCTACCCGGAGAGAAACCGCCGATACA
CTTGTGTGGGTACCCTACCGAACACACCCTTTGTTCGTGTCCCCTTGTTC
GTTTCTTTGCATGCTCGGCCTTTGTTTGTGCTCTTGACGTCACTTTTTCC
CCTGATGCGTTCCTTCCCGCTTCCTTTTTCGTCCATGTTTCCGGGTCTTT
TTTTTTACATATATATTTAGGACCTGGCGAACGACCAACAACCCTTGGGC
TCCGACCACGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGC
CGCCCGCCGTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACG
GCCGATTTCTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTC
GCTATTGAGTTTTTGTTCGTTGGTTGAGTCTCAGAGTAAGTAAGGCAGCC
CGTGTTGGCGGAAGAAGACGGAGGAATAAGTCTGTGTTTTGCCAAGTAAC
GAAGCGCGTGCGGTTGGAATGGTTTATTGTTGTAGCCGATGTTGATGGAA
GGTTATTGTAGCTAAGGTAGATTCCGGTGTTGACGGGAAAGGACGTAAGT
CTGTGTCTTGCCAATACATATGTCCAGACGTTGTGGCCGGAGTTCGGCAA
GAGCATCACCAGGGGATGGTAGCGACTTGGCTCAACCGACCGTCGCATTG
CGGCTACACGTTGGGAACTTGTCGGAGCACACGGTGGTGGAGAGCAGTCC
TAACCATTCGTCAAGCACGCACGTTTGCCCCAAGAATTTCAGCCGAGTGC
TGCGGGTGTACGTAGGCTCGTATGTAGTCTTTACATTTCCGAACATCCCT
GAGTGTCCCGTCTTTGAAACGTTGAACACGCGAGCAACAGTTGCAGCATG
ATTACACATGTAGATTGTTGGCGTGCGCCGTAGACTAGTCAATCGAGATC
TGGAGTTTTTTTTGAGAAAGTACCGTTGGGTATGTAGGTTGTACCCGCTA
GCTAGGAGGAGAGTGTTTTTGCTTCGATTTCCAAACTCCTGGCTGAAAAC
GACCTAGTCTAGTCTACATAGGCCCCAAAATCGAAAATCGAGCAAAAAGG
GGGGGGGGGGCGCGGACATATAATAAGGGGTTGATCGACGGGTTCAACAC
CGAGGCGTTTGCCCCTTCTGGGCGTTGTCGAACATGCACATATATCTGGC
ACCTCCCAGGCTCGCCCTCAGCAGCCTCCGCTCAGGGAGGATTCATTTGG
GTGATTGTGTGCATAGATGCGTGGATCGTGTTCAATTAAACATTTCCGTC
TTGGTCAGAGGTAGAACAAGCCGTGGGGTAAGCAAGGGCTGCCTTCGCAC
CCCTCTTGAACGTTCGTTTTCGTGTGCTGGCCTGACTGGGTGAGCCGGCC
CGGCTACATTGTGGAGCATATGGACCAGAATGGGGAACCTCTTCGTTGGG
CTTAGCGAGTAATTTAAATATGTGCATTGTGCATGTCGGTATTCTGTGCT
TACCCTTGTCGCACCGATGCAACCCACATGTTGTGGCAACCCACATGTTG
TGGGGAAGGATGCTTTTTTCTGTGGATCAAGGACAAACCGAAATACACTG
CATGCTGTAAAAATC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:286085..288399-

>mRNA_E-siliculosus-1a_M_contig86.16649.1 ID=mRNA_E-siliculosus-1a_M_contig86.16649.1|Name=mRNA_E-siliculosus-1a_M_contig86.16649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:286085..288399- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCCGACGACGAGATGCCCGTCTCCTTCAGCTTCGAGGAGTGGAACGACG
ACGACGAGCCCCTCTCCTTGAGCTTCGCGGCAGCCGACGACGAGATGCCC
GTCTCCTTCAGCTTCGAGGAGTGGAACGACGACGACGAGCCCCTCTCCTT
GAGCTTCGCGGCGACCTGGCGAACGACCAACAACCCTTGGGCTCCGACCA
CGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGCCGCCCGCC
GTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACGGCCGATTT
CTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTCGCTATTGA
GTTTTTGTTCGTTGGTTGAGACCTGGCGAACGACCAACAACCCTTGGGCT
CCGACCACGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGCC
GCCCGCCGTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACGG
CCGATTTCTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTCG
CTATTGAGTTTTTGTTCGTTGGTTGA
back to top