mRNA_E-siliculosus-1a_M_contig86.16646.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16646.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16646.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16646.1 vs. uniprot
Match: A0A6H5JFX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX2_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.500e-39
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 MDDIHEGGDFIFNPALRGIWMKFRHCPSTMNGSSEWNTGFATPTIELHVLMRRERLANTGGLAVEENHEYANA 219
            MDDI EGGDFIFNPAL GIWMKFRHCPSTM GS EWNTGFATPTI+LHVLM RERLANTGGL V+ENHEYA+A
Sbjct:  105 MDDILEGGDFIFNPALGGIWMKFRHCPSTMIGSGEWNTGFATPTIKLHVLMCRERLANTGGLVVQENHEYADA 177
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16646.1 vs. uniprot
Match: D8LBS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS6_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.260e-33
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    4 DDIHEGGDFIFNPALRGIWMKFRHCPSTMNGSSEWNTGFATPTIELHVLMRRERLANTGGLAVEENHEYANA 219
            D I   GDF+FNPAL GIWM+FRHCPSTMNGS EWNTGFATP+I+LHVLM RERLANT GL VE+NHEYA+A
Sbjct:  122 DGILGEGDFVFNPALGGIWMRFRHCPSTMNGSGEWNTGFATPSIKLHVLMFRERLANTDGLVVEQNHEYADA 193
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16646.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   25 DFIFNPALRGIWMKFRHCPSTMNGSSEWNTGFATPTIELHVLMRRERLANTGGLAVEENHEYANA 219
            +F + PAL G+WM+ RH PS    S  WNTG ATPTIE  VLMRR RLA+ GGL VEE+  YA A
Sbjct: 2939 EFRYLPALGGLWMRVRHLPSAKTASDVWNTGSATPTIEYRVLMRRARLADEGGLTVEEDAGYAEA 3003
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JFX2_9PHAE7.500e-3987.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LBS6_ECTSI2.260e-3379.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI2_9PHAE1.110e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:263828..264223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size294
Model size396
Exons1
Ec32 orthologEc-27_002890.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.5150027-UTR-E-siliculosus-1a_M_contig86:263827..2639291622936310.5150027-UTR-E-siliculosus-1a_M_contig86:263827..263929Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 263828..263929 -
1696251019.4986532-UTR-E-siliculosus-1a_M_contig86:263827..2639291696251019.4986532-UTR-E-siliculosus-1a_M_contig86:263827..263929Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 263828..263929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.5341642-CDS-E-siliculosus-1a_M_contig86:263929..2642231622936310.5341642-CDS-E-siliculosus-1a_M_contig86:263929..264223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 263930..264223 -
1696251019.5113397-CDS-E-siliculosus-1a_M_contig86:263929..2642231696251019.5113397-CDS-E-siliculosus-1a_M_contig86:263929..264223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 263930..264223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16646.1prot_E-siliculosus-1a_M_contig86.16646.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 263930..264223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16646.1

>prot_E-siliculosus-1a_M_contig86.16646.1 ID=prot_E-siliculosus-1a_M_contig86.16646.1|Name=mRNA_E-siliculosus-1a_M_contig86.16646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=98bp
MDDIHEGGDFIFNPALRGIWMKFRHCPSTMNGSSEWNTGFATPTIELHVL
MRRERLANTGGLAVEENHEYANATAAAAGGGGGGGGGGGGDGPQGQP*
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mRNA from alignment at E-siliculosus-1a_M_contig86:263828..264223-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16646.1 ID=mRNA_E-siliculosus-1a_M_contig86.16646.1|Name=mRNA_E-siliculosus-1a_M_contig86.16646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:263828..264223- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACGACATCCACGAGGGGGGCGACTTCATCTTCAATCCTGCGTTGAG
AGGTATCTGGATGAAATTCCGCCACTGCCCGTCCACGATGAACGGCTCCA
GCGAGTGGAACACGGGATTCGCTACGCCCACCATCGAGTTGCACGTGCTG
ATGCGTCGTGAGCGTCTCGCCAACACGGGCGGACTGGCGGTTGAAGAGAA
CCACGAGTACGCCAACGCGACTGCGGCTGCTGCGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGATGGACCACAGGGACAACCGTGAAGGACT
GGGATGTTTGGCCCCCCTGGTCAAGGAAGGAACGAAGGCAAGCATTTCTG
GCGAAGGAGGCCGCCCAAGACTTGTTCAGGCGCAGGAACCCTCTTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:263828..264223-

>mRNA_E-siliculosus-1a_M_contig86.16646.1 ID=mRNA_E-siliculosus-1a_M_contig86.16646.1|Name=mRNA_E-siliculosus-1a_M_contig86.16646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=588bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:263828..264223- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACGACATCCACGAGGGGGGCGACTTCATCTTCAATCCTGCGTTGAG
AGGTATCTGGATGAAATTCCGCCACTGCCCGTCCACGATGAACGGCTCCA
GCGAGTGGAACACGGGATTCGCTACGCCCACCATCGAGTTGCACGTGCTG
ATGCGTCGTGAGCGTCTCGCCAACACGGGCGGACTGGCGGTTGAAGAGAA
CCACGAGTACGCCAACGCGACTGCGGCTGCTGCGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGATGGACCACAGGGACAACCGTGAATGGAC
GACATCCACGAGGGGGGCGACTTCATCTTCAATCCTGCGTTGAGAGGTAT
CTGGATGAAATTCCGCCACTGCCCGTCCACGATGAACGGCTCCAGCGAGT
GGAACACGGGATTCGCTACGCCCACCATCGAGTTGCACGTGCTGATGCGT
CGTGAGCGTCTCGCCAACACGGGCGGACTGGCGGTTGAAGAGAACCACGA
GTACGCCAACGCGACTGCGGCTGCTGCGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGATGGACCACAGGGACAACCGTGA
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