mRNA_E-siliculosus-1a_M_contig86.16644.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16644.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16644.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:243663..244605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size786
Model size943
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936305.959239-UTR-E-siliculosus-1a_M_contig86:243662..2438191622936305.959239-UTR-E-siliculosus-1a_M_contig86:243662..243819Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 243663..243819 +
1696251017.5223565-UTR-E-siliculosus-1a_M_contig86:243662..2438191696251017.5223565-UTR-E-siliculosus-1a_M_contig86:243662..243819Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 243663..243819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936305.9746587-CDS-E-siliculosus-1a_M_contig86:243819..2446051622936305.9746587-CDS-E-siliculosus-1a_M_contig86:243819..244605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 243820..244605 +
1696251017.5499666-CDS-E-siliculosus-1a_M_contig86:243819..2446051696251017.5499666-CDS-E-siliculosus-1a_M_contig86:243819..244605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 243820..244605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16644.1prot_E-siliculosus-1a_M_contig86.16644.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 243820..244605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16644.1

>prot_E-siliculosus-1a_M_contig86.16644.1 ID=prot_E-siliculosus-1a_M_contig86.16644.1|Name=mRNA_E-siliculosus-1a_M_contig86.16644.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=262bp
MRDTSFCTCLLIYPTDIEKSSERTRRAEAKNAETVVACGRLATQYRTTPP
PLLCPRAGHLILLASPWKTCPSPEVANPKDIEVNMEYASTLPFQAKIVPP
CSTTPTLLYFGSIVPRKRNIKCSLPPCGAASQQNVREPDRSSVKSQDRNG
RRFFQPGTTVRMPHFSRPPNPDRTRRALTFTTLPDRPILDACPRVGAPSH
VPRNSLKQRYAPPPLNVASTLAALPLFLLSIVKRWNHLPNKRKEVCMRRH
NGRLVSRASLPT
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mRNA from alignment at E-siliculosus-1a_M_contig86:243663..244605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16644.1 ID=mRNA_E-siliculosus-1a_M_contig86.16644.1|Name=mRNA_E-siliculosus-1a_M_contig86.16644.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=943bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:243663..244605+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACAGACAGACAGACAGACAAAGGTTCCTTTGTATCCTTGGTCTGTGCGC
ACGAACAAGCGGTCGCGTGCGCGGCGTGCGACAGCACGCACGTGCGTAAA
ACGTGAAGAAACTGACGTGCCACTTGCTGCAAACATGCACATGCCGTCGT
AAACGCGATGAGAGACACGAGCTTTTGTACCTGTCTCCTAATTTATCCTA
CCGATATAGAGAAAAGTTCCGAACGGACGAGGCGTGCAGAGGCGAAAAAC
GCGGAAACCGTCGTCGCCTGTGGCCGCCTCGCCACACAATACAGGACTAC
CCCTCCTCCTCTCCTCTGCCCCCGTGCGGGCCATCTCATACTTCTAGCAT
CTCCTTGGAAAACCTGCCCAAGTCCTGAGGTGGCAAATCCAAAAGACATC
GAAGTTAACATGGAATACGCAAGCACGCTACCGTTCCAAGCGAAAATTGT
CCCTCCCTGCTCCACTACTCCTACACTGCTGTACTTCGGCAGTATCGTAC
CGAGAAAACGAAACATCAAGTGCTCCCTCCCTCCATGCGGTGCAGCCAGC
CAACAGAACGTACGCGAACCAGACCGCAGCAGCGTGAAGTCGCAAGACAG
GAACGGCCGCCGTTTTTTCCAACCGGGAACAACCGTGCGTATGCCCCACT
TTTCTCGGCCGCCAAACCCAGATCGCACCCGACGGGCGCTAACTTTCACC
ACACTACCAGACAGGCCGATTCTTGATGCTTGCCCTCGAGTGGGTGCACC
TTCACACGTGCCACGCAATTCACTCAAGCAGAGGTACGCCCCGCCACCGC
TGAATGTCGCTTCGACCTTGGCGGCGCTGCCTCTGTTTCTACTTTCAATC
GTCAAAAGGTGGAATCATCTTCCAAACAAACGAAAAGAAGTATGCATGCG
CCGACACAACGGCCGACTGGTGTCCCGAGCCAGCCTTCCGACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:243663..244605+

>mRNA_E-siliculosus-1a_M_contig86.16644.1 ID=mRNA_E-siliculosus-1a_M_contig86.16644.1|Name=mRNA_E-siliculosus-1a_M_contig86.16644.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1572bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:243663..244605+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGAGACACGAGCTTTTGTACCTGTCTCCTAATTTATCCTACCGATAT
AGAGAAAAGTTCCGAACGGACGAGGCGTGCAGAGGCGAAAAACGCGGAAA
CCGTCGTCGCCTGTGGCCGCCTCGCCACACAATACAGGACTACCCCTCCT
CCTCTCCTCTGCCCCCGTGCGGGCCATCTCATACTTCTAGCATCTCCTTG
GAAAACCTGCCCAAGTCCTGAGGTGGCAAATCCAAAAGACATCGAAGTTA
ACATGGAATACGCAAGCACGCTACCGTTCCAAGCGAAAATTGTCCCTCCC
TGCTCCACTACTCCTACACTGCTGTACTTCGGCAGTATCGTACCGAGAAA
ACGAAACATCAAGTGCTCCCTCCCTCCATGCGGTGCAGCCAGCCAACAGA
ACGTACGCGAACCAGACCGCAGCAGCGTGAAGTCGCAAGACAGGAACGGC
CGCCGTTTTTTCCAACCGGGAACAACCGTGCGTATGCCCCACTTTTCTCG
GCCGCCAAACCCAGATCGCACCCGACGGGCGCTAACTTTCACCACACTAC
CAGACAGGCCGATTCTTGATGCTTGCCCTCGAGTGGGTGCACCTTCACAC
GTGCCACGCAATTCACTCAAGCAGAGGTACGCCCCGCCACCGCTGAATGT
CGCTTCGACCTTGGCGGCGCTGCCTCTGTTTCTACTTTCAATCGTCAAAA
GGTGGAATCATCTTCCAAACAAACGAAAAGAAGTATGCATGCGCCGACAC
AACGGCCGACTGGTGTCCCGAGCCAGCCTTCCGACAATGAGAGACACGAG
CTTTTGTACCTGTCTCCTAATTTATCCTACCGATATAGAGAAAAGTTCCG
AACGGACGAGGCGTGCAGAGGCGAAAAACGCGGAAACCGTCGTCGCCTGT
GGCCGCCTCGCCACACAATACAGGACTACCCCTCCTCCTCTCCTCTGCCC
CCGTGCGGGCCATCTCATACTTCTAGCATCTCCTTGGAAAACCTGCCCAA
GTCCTGAGGTGGCAAATCCAAAAGACATCGAAGTTAACATGGAATACGCA
AGCACGCTACCGTTCCAAGCGAAAATTGTCCCTCCCTGCTCCACTACTCC
TACACTGCTGTACTTCGGCAGTATCGTACCGAGAAAACGAAACATCAAGT
GCTCCCTCCCTCCATGCGGTGCAGCCAGCCAACAGAACGTACGCGAACCA
GACCGCAGCAGCGTGAAGTCGCAAGACAGGAACGGCCGCCGTTTTTTCCA
ACCGGGAACAACCGTGCGTATGCCCCACTTTTCTCGGCCGCCAAACCCAG
ATCGCACCCGACGGGCGCTAACTTTCACCACACTACCAGACAGGCCGATT
CTTGATGCTTGCCCTCGAGTGGGTGCACCTTCACACGTGCCACGCAATTC
ACTCAAGCAGAGGTACGCCCCGCCACCGCTGAATGTCGCTTCGACCTTGG
CGGCGCTGCCTCTGTTTCTACTTTCAATCGTCAAAAGGTGGAATCATCTT
CCAAACAAACGAAAAGAAGTATGCATGCGCCGACACAACGGCCGACTGGT
GTCCCGAGCCAGCCTTCCGACA
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