mRNA_E-siliculosus-1a_M_contig86.16637.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig86.16637.1
Unique Name	mRNA_E-siliculosus-1a_M_contig86.16637.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot
Match: A0A6H5KC36_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC36_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.020e-10
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 3

Query: 2115 MPGDRGRATHLVTPSCGSSRGAALWQSKGAARGMSH 2222
            MPGDRGRATHL TPSCGSSRGAALWQSKG ARGMSH
Sbjct:    1 MPGDRGRATHLATPSCGSSRGAALWQSKGPARGMSH 36

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.660e-9
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = -1

Query: 1022 IGAWVLLEVDPEEGNGRRNRVTTPNVRLTELAT 1120
            IGAWVLLEVDP+EG+ RR RVTTPNVRLTELAT
Sbjct:   61 IGAWVLLEVDPKEGSRRRKRVTTPNVRLTELAT 93

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.570e-9
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = -1

Query: 1022 HCSICATK*ETSQ*ENRSDRCPTTIGAWVLLEVDPEEGNGRRNRVTTPNVRLTELAT 1192
            HC   +T+      E+ S      IGAWVLLEV+P+EG+GRR RVTTP VRLTELAT
Sbjct:   58 HCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKEGSGRRKRVTTPTVRLTELAT 114

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.490e-8
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = -1

Query: 1022 IGAWVLLEVDPEEGNGRRNRVTTPNVRLTELAT 1120
            IGAWVLLEVDP+E +GRR RVTTPNVRLT LAT
Sbjct:   81 IGAWVLLEVDPKERSGRRRRVTTPNVRLTGLAT 113

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig86.16637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A6H5KC36_9PHAE	6.020e-10	94.44	Protein kinase domain-containing protein n=2 Tax=E...	[more]
A0A6H5K105_9PHAE	3.660e-9	87.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAW0_9PHAE	4.570e-9	57.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LD01_9PHAE	5.490e-8	84.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig86	contig	E-siliculosus-1a_M_contig86:154676..157906 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	195
Model size	2425
Exons	3
Hectar predicted targeting category	other localisation

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig86.16637.1	prot_E-siliculosus-1a_M_contig86.16637.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig86 156832..157790 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936309.2675872-UTR-E-siliculosus-1a_M_contig86:154675..156067	1622936309.2675872-UTR-E-siliculosus-1a_M_contig86:154675..156067	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 154676..156067 +
1696251018.9770343-UTR-E-siliculosus-1a_M_contig86:154675..156067	1696251018.9770343-UTR-E-siliculosus-1a_M_contig86:154675..156067	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 154676..156067 +
1622936309.287672-UTR-E-siliculosus-1a_M_contig86:156109..156831	1622936309.287672-UTR-E-siliculosus-1a_M_contig86:156109..156831	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 156110..156831 +
1696251018.9895692-UTR-E-siliculosus-1a_M_contig86:156109..156831	1696251018.9895692-UTR-E-siliculosus-1a_M_contig86:156109..156831	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 156110..156831 +
1622936309.3382134-UTR-E-siliculosus-1a_M_contig86:157790..157906	1622936309.3382134-UTR-E-siliculosus-1a_M_contig86:157790..157906	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 157791..157906 +
1696251019.033525-UTR-E-siliculosus-1a_M_contig86:157790..157906	1696251019.033525-UTR-E-siliculosus-1a_M_contig86:157790..157906	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig86 157791..157906 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936309.3078592-CDS-E-siliculosus-1a_M_contig86:156831..156979	1622936309.3078592-CDS-E-siliculosus-1a_M_contig86:156831..156979	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig86 156832..156979 +
1696251019.0044756-CDS-E-siliculosus-1a_M_contig86:156831..156979	1696251019.0044756-CDS-E-siliculosus-1a_M_contig86:156831..156979	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig86 156832..156979 +
1622936309.3230512-CDS-E-siliculosus-1a_M_contig86:157743..157790	1622936309.3230512-CDS-E-siliculosus-1a_M_contig86:157743..157790	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig86 157744..157790 +
1696251019.0156765-CDS-E-siliculosus-1a_M_contig86:157743..157790	1696251019.0156765-CDS-E-siliculosus-1a_M_contig86:157743..157790	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig86 157744..157790 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig86:154676..157906+
coding sequence from alignment at E-siliculosus-1a_M_contig86:154676..157906+

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16637.1

>prot_E-siliculosus-1a_M_contig86.16637.1 ID=prot_E-siliculosus-1a_M_contig86.16637.1|Name=mRNA_E-siliculosus-1a_M_contig86.16637.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=65bp
MPGDRGRATHLVTPSCGSSRGAALWQSKGAARGMSHVNWKLGERDGSSEG
GLKTAAAAAAAAAS*

mRNA from alignment at E-siliculosus-1a_M_contig86:154676..157906+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig86.16637.1 ID=mRNA_E-siliculosus-1a_M_contig86.16637.1|Name=mRNA_E-siliculosus-1a_M_contig86.16637.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3231bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:154676..157906+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTCTTCTCTCTGCGACTAGTCGGCAGAGATGCTGGCTCAATGAGTCA
AATGGAGTGTGGCACAAGCAAGGGGAGGAGAAGGCGAAGAACTGAGAGGC
CAAGTCTGGTGCGACGGGCACATCGATCGGGCAGTCGCACGGCCGGAGCA
TTCGAGCGCATCTATCTCCTCCATCGCCCTGCACAGAACACGGCCTGCTT
CCCGCAATATCGACCGCGTAGCCTATGATGGCCAAGCCTTGTGCTGCTGC
TAGTCCTGGCTAATGGATGGACTTGTTGCTGTAGCACGGCAGCAAAACCA
TGCTGTAGCATCTACTTCTTAACAAGAGGTAAGAGGTTGAAGAGGTAGCA
ACGCACGACTTGGCAGCTGCTGTGCGAAGCAGTGCTGCTGCTGCTGTATC
TTGCTGCTGCTGTATCTACATGCACCATGTGCCAACAGTCGCACAGTGCG
TCTTTTCCTCCGTCACGAATGATCCACTTACTCCGCTTGCTTGTCAGTGT
TCCATCACCGATGATTGATTTACCTTGCGCATATCAGCAGGTCGAGATGT
ATGTATGTCAGGTTGCTTTTCAAAGTGCTTACAGTTAGTTATCGCACCAA
TTTCCGGTGCAGACTCAATTCTTTTTGGTCAGGATAGGTTGTCCAATATT
AGTTTCTCACGTCAAGTTTCTTATTTTTCCGTGCTGCAGAATCCTGCTGA
ATTTCTTAAATCGGCAATTTCTCGTTGTTCTCTTCTTGCCTACACAACGT
GCTAAATAAATAAATGATTTGCGTTGCTCTCCTCGCCTCCCGTACTCAAC
CCCGATTGATTCTCACCACCGACGGTTGTACTGAAGTACATATGAAGGCC
ACAGCCTAGAAGCGAAATATATAAATATATTCAGCTGAAATGTCTCTCTG
TCGCTACAAGGTCCTGTCCCCCCCCCATGAGTGAGGGATGAAACTAATTA
TATAAGCAAACACCCAATGATGCCTCACCCGCACACTGGCATGCCCACAA
CGAAAATCACCCGACATTCTATGTTGCAAGCTCAGTGAGGCGAACATTGG
GGGTTGTCACCCTATTGCGCCTCCCATTCCCTTCCTCCGGGTCTACCTCT
AGGAGCACCCACGCCCCAATTGTAGTAGGGCAGCGGTCGCTCCTGTTTTC
TTACTGAGACGTTTCTTATTTTGTTGCACAGATTGAGCAATGTTTCTTAA
CACTATTTTCTTATGTTTCGTGGAAATTTGAGCCTTTGTTTCTGAATAAA
ATGTTTCTTGATCGCGGGCTCTAACTGTTATCCACCGCCAACAATCTACA
TAATCTACTCAGGATTCCATCATCGGCCTTTCTTTGAATCTCCACCCGGG
TAATTGCGTTGCCCGACCCCGCTGTCTGTGTCGGTCAGGCTGGCTGGCTA
CAGGAAGTAAGCGGGTGGCCTCTTTCTTGGTAAGGCGGTAAGGCGGGAGT
GGATCTTCCAAACACACACACTGCATTGATCAGCCGGTTAGCGCGGTTGA
TAGTAATAATCATAAACACACGCAGTGAGGTGATGCAGTGGCCATTTCAT
AGGGGAATTGACAAAATGGGGTACAATGCAGTACAACAAGAGGGTGTATG
TATGCGCAGGAACGGGGAACGTTTTTCGGTGCGGGGCGCATGGGTACCGG
CTGGTTAGCCCTAAAATCACCTTCTAGTGGGTCAGCCTCACGCACCAAGT
CCCTGGGCAGCACGCTCACCCTTATTTTTTCACCCACTGGAGGACAGGGC
TAATTTACAACTCTACAGGAGCTAGGGGGCACCTCATCTTGTCACACACA
GCAGAGGGTACACAACGGGAGGAAAAGGAAAAACAAAGAAAAGTTGTGAA
AAAAAAACAAACTAGGAGCAAATCACCACCGCCGTTCTGTGTGTGAGTGT
CAACACTCCAGACGACACACGTGTGCCCCGCGTGAAAATCTACCCCTCTA
TCTTCGCACGTGCTCTTGGAGCTTTGCTGGCCGCTCTGCATTGGTTCCCG
TCGTGAGCGAAGCAGTCGGAGCGAAGCGCGCATCGAGATAGGAACAGCTT
TCAAAGCTTTCGCGAAATTTCCCAGAAAAAGACATCGTGAAGTACACTGC
TGCAGCTGTAGGTGTGCCTGGCATTCGTTGTTGCTTTCGTCCGTGGGTCG
GCCTGGATGCCAGGAGATCGCGGGCGAGCGACGCACCTGGTAACGCCGTC
ATGCGGCAGCAGTAGAGGTGCCGCTCTCTGGCAAAGCAAGGGCGCGGCGA
GGGGAATGTCGCACGTGAATTGGAAGCTGGGTGAACGGGATGGTAGCAGT
GAAGGTGAGCAAGCAGCCAATGTCTTCTATTTTGCCGTCCCAGAGAGAAG
GCGGGGGGGGGGGGAGTTGAGGTCCCCTCCTTCGGAGTGTACACGTGCCG
GAGAAGGGGGTTGAGGTTCCTTGGCGCACTGCGTTACATTGACACCCCCT
CACTGCTGTTGGTCGTTCTCTAATCGCACCCGCTGCGCGCGAGCTTCGTT
CTTTGCTCCCCTGAAAATCTAGACCAAATCCGACACGCGTCCTGTCCTAT
TTGGCCTGGCGAGGGCGTCGTCGCGATGCCTCTGTTGCTGTTTGCATTAG
ATCGCGTGTTGCCAATTTCGCAACACGCCGCACCCTGGTGTCTGTAGAGC
GTTCTCCCTTCCGCTCTTGCCGAACGCTCCATGGCTACGCGCTCCCGTTC
ACGCTGCCGCGCGTGAGGCGTCGATTGAGTTAGTAGCTCGACAAAATATC
CAAAACAAAATGGTTTGCCCTGGGTAAGAACAACATGAACGCCGCTTCTT
CTCTCCAACCCAGTGAAAAATGGAAAATCACCCCCCACACGATTCGCGCA
ATTTTTTCACCGCCCATCCATCACCCTTCGCACCCTCCCGCCCAACCCGT
CCATGGAAGTCGCGCACATCACCCGTGGTGTCAAGCTCGTGTGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTTCTTCCTATCTCCTCGCCGATGCTTCT
CGTGATGGGGTGATAACAAATATCCGTTGCGCGTTGCGCACTCTAATCCC
CTTATCATGAAAACGTAGGAGGGTTGAAGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCATCATGAAGGGTTTGTCCCTCTCTTGCGTCAACTATCGGATC
TATCTGATCGCTCCGTAGACGAAGAAATCCTACTGCGGAAGGGGAAGCTG
GAGCGGCAGCAGCTCGGGGCCAGCTCGACCT

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:154676..157906+

>mRNA_E-siliculosus-1a_M_contig86.16637.1 ID=mRNA_E-siliculosus-1a_M_contig86.16637.1|Name=mRNA_E-siliculosus-1a_M_contig86.16637.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:154676..157906+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCAGGAGATCGCGGGCGAGCGACGCACCTGGTAACGCCGTCATGCGG
CAGCAGTAGAGGTGCCGCTCTCTGGCAAAGCAAGGGCGCGGCGAGGGGAA
TGTCGCACGTGAATTGGAAGCTGGGTGAACGGGATGGTAGCAGTGAAGAT
GCCAGGAGATCGCGGGCGAGCGACGCACCTGGTAACGCCGTCATGCGGCA
GCAGTAGAGGTGCCGCTCTCTGGCAAAGCAAGGGCGCGGCGAGGGGAATG
TCGCACGTGAATTGGAAGCTGGGTGAACGGGATGGTAGCAGTGAAGGAGG
GTTGAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATGAGAGGGTT
GAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATGA