mRNA_E-siliculosus-1a_M_contig85.16608.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig85.16608.1
Unique NamemRNA_E-siliculosus-1a_M_contig85.16608.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig85contigE-siliculosus-1a_M_contig85:435528..436473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size285
Model size287
Exons2
Ec32 orthologEc-13_001180.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936302.8988912-CDS-E-siliculosus-1a_M_contig85:435527..4356961622936302.8988912-CDS-E-siliculosus-1a_M_contig85:435527..435696Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 435528..435696 +
1696251016.1231296-CDS-E-siliculosus-1a_M_contig85:435527..4356961696251016.1231296-CDS-E-siliculosus-1a_M_contig85:435527..435696Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 435528..435696 +
1622936302.9913971-CDS-E-siliculosus-1a_M_contig85:436357..4364731622936302.9913971-CDS-E-siliculosus-1a_M_contig85:436357..436473Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 436358..436473 +
1696251016.1353729-CDS-E-siliculosus-1a_M_contig85:436357..4364731696251016.1353729-CDS-E-siliculosus-1a_M_contig85:436357..436473Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 436358..436473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig85.16608.1prot_E-siliculosus-1a_M_contig85.16608.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig85 435528..436473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig85.16608.1

>prot_E-siliculosus-1a_M_contig85.16608.1 ID=prot_E-siliculosus-1a_M_contig85.16608.1|Name=mRNA_E-siliculosus-1a_M_contig85.16608.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=95bp
DAEKRSPSDATEMENIVEAKKTRAEETQAVGEEPSEKTKKTATAERCKAN
VESMLLWSAASTIEGQCNARRGGSCHARCNFRALHQRFPKNPQI*
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mRNA from alignment at E-siliculosus-1a_M_contig85:435528..436473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig85.16608.1 ID=mRNA_E-siliculosus-1a_M_contig85.16608.1|Name=mRNA_E-siliculosus-1a_M_contig85.16608.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=946bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:435528..436473+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGCCGAGAAACGCTCTCCTTCTGATGCGACCGAAATGGAGAACATCGT
AGAGGCTAAGAAAACCAGAGCCGAAGAAACGCAGGCCGTTGGTGAAGAAC
CGTCCGAAAAGACAAAGAAGACCGCTACTGCGGAGAGGTGTAAGGCCAAT
GTAGAATCAATGTTATTGTGTTGATTTTATCCCACCGAATCGAATTAGGC
ACGAAGTCGCGCCCCGCTTTTGAGTCATACAATGATGTCCGCGATCGGGT
CGGCAGGTATCGAACGTTCTTGTCTCCAGATGAATCTCGGGTCATGTTCG
GATGCTGTCGTTGTATCAGAAATAGTGTACTTCGGAGGGGGTCACCAGTC
TCGGATAGGGGACCTACAAGCCACTGACGCTGAATCAAACGGAACCTGAA
GATGCAAGGCGGCGGGAACAAGGGCCGCACAACGCTCATCGCCGTCCACT
TCACGGACGACTCTTTTCGACCTATCGCCAACTTGAAAATATCGCTCATG
TACGCTCCTCTTCCTACAGGAACCGACCGACTCTCCATCGCCAAAATGCC
CAAAACATCACCATCTAAAGAGGATGAATCTGCGTCGCCCACTGCCACCT
CTCTTGATGCCTCCGCCTCCGCGCTCGGCACCACCACCACCACCACCACC
GCAGGAGCGGTCGAGTCTTGCGGACTTAGCCCTATCGGCCAATTGTGAGG
GGTAATCCCGCTTTGCCCCCGTCCGGAAAGCCTGCCGCACCGCACAAAGG
CTCGTTTCGACCGGAAGCCGTCTCTCTGTGCTTTTGCTTCCTCTTGTGCT
ACTGCGTCCGTTACTGTGTCGCCCTGGAAGGGTCGGCGGCGTCCACTATT
GAAGGACAATGCAACGCTCGCCGAGGTGGAAGCTGTCACGCCCGCTGCAA
CTTCCGTGCCCTTCACCAACGATTTCCGAAAAATCCGCAAATTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:435528..436473+

>mRNA_E-siliculosus-1a_M_contig85.16608.1 ID=mRNA_E-siliculosus-1a_M_contig85.16608.1|Name=mRNA_E-siliculosus-1a_M_contig85.16608.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:435528..436473+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGCCGAGAAACGCTCTCCTTCTGATGCGACCGAAATGGAGAACATCGT
AGAGGCTAAGAAAACCAGAGCCGAAGAAACGCAGGCCGTTGGTGAAGAAC
CGTCCGAAAAGACAAAGAAGACCGCTACTGCGGAGAGGTGTAAGGCCAAT
GTAGAATCAATGTTATTGTGACGCCGAGAAACGCTCTCCTTCTGATGCGA
CCGAAATGGAGAACATCGTAGAGGCTAAGAAAACCAGAGCCGAAGAAACG
CAGGCCGTTGGTGAAGAACCGTCCGAAAAGACAAAGAAGACCGCTACTGC
GGAGAGGTGTAAGGCCAATGTAGAATCAATGTTATTGTGGTCGGCGGCGT
CCACTATTGAAGGACAATGCAACGCTCGCCGAGGTGGAAGCTGTCACGCC
CGCTGCAACTTCCGTGCCCTTCACCAACGATTTCCGAAAAATCCGCAAAT
TTAGGGTCGGCGGCGTCCACTATTGAAGGACAATGCAACGCTCGCCGAGG
TGGAAGCTGTCACGCCCGCTGCAACTTCCGTGCCCTTCACCAACGATTTC
CGAAAAATCCGCAAATTTAG
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