mRNA_E-siliculosus-1a_M_contig85.16579.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A6H5L5K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K5_9PHAE) HSP 1 Score: 311 bits (798), Expect = 6.350e-105 Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 1
Query: 271 MGSPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRK 765
MGSPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVAN RRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQL ++RDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRK
Sbjct: 1 MGSPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLASLRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRK 165
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: D7FSZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ6_ECTSI) HSP 1 Score: 254 bits (648), Expect = 6.200e-82 Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 1
Query: 358 MFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRKK 768
+F QVKLAGTAGVRVEELTPHRSVVKVAN RRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRKK
Sbjct: 43 IFAFQVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRKK 179
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: W7T2Q8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Q8_9STRA) HSP 1 Score: 198 bits (503), Expect = 4.060e-60 Identity = 99/161 (61.49%), Postives = 123/161 (76.40%), Query Frame = 1
Query: 283 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRK 765
N++A+ V K+ LPA+ +PW +L F+ VKLAGTA + VEE++ R+VV + N RRVQNHIG +HACGMALAAESATGI+VGM+VPDS LPLCKSM ++F R +GD+ AVA L+EEQLT + +EKG+ V V VTD SGK PI AE VWAWVPK RK
Sbjct: 7 NRLATQVAKLTSPLPAAYKPWGYTLAFDMMVKLAGTARLWVEEMSDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAVAHLTEEQLTKINSEEKGDVLVAVEVTDSSGKSPITAEMVWAWVPKLRK 167
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: K0SX00_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SX00_THAOC) HSP 1 Score: 192 bits (487), Expect = 1.020e-57 Identity = 93/161 (57.76%), Postives = 124/161 (77.02%), Query Frame = 1
Query: 283 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRK 765
NK+AS + +I+ LP S+ P+A S +FN+ VKLAGTAG+R++EL+ ++ + +ANARRVQNHIG +HAC MALAAESATGIL+GM+VPD+ LPL K+M +DF R +GD+ A A LS+E + +++KGE V TV DESG EPI+AE +WAWV KRRK
Sbjct: 6 NKMASTIQRIQSTLPESMHPFANSFLFNNMVKLAGTAGIRIDELSHKKATISLANARRVQNHIGGLHACSMALAAESATGILIGMNVPDTHLPLIKTMKVDFVRRCKGDIRAEATLSDEDYRRIHEEDKGEVWVPCTVVDESGNEPIKAEMLWAWVAKRRK 166
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A836CKL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL5_9STRA) HSP 1 Score: 189 bits (479), Expect = 3.110e-56 Identity = 89/160 (55.62%), Postives = 121/160 (75.62%), Query Frame = 1
Query: 283 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
NK A+ V K++ +P +LQPWA+S MFN+ VK AGTAG+ ++E+ P R+VV + N RRVQNHIG VHACGMAL +E+ATG+L+ ++VPD+ LPLCKS +DF R+++GD+ AVA L+++ L + +KG+ V VTVTDE G EPI+AE WAWV K R
Sbjct: 6 NKFATAVSKVQSVMPTALQPWAISGMFNTMVKFAGTAGISIDEIGPQRAVVTLKNRRRVQNHIGGVHACGMALLSETATGVLLAINVPDTHLPLCKSFKLDFKRIAKGDLKAVATLTDDMLLQMTTTDKGDVTVPVTVTDEDGNEPIKAEMCWAWVLKNR 165
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A349LV99_9GAMM (DUF4442 domain-containing protein n=1 Tax=Rheinheimera sp. TaxID=1869214 RepID=A0A349LV99_9GAMM) HSP 1 Score: 177 bits (450), Expect = 3.170e-52 Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query: 283 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
N ++++V KIK P LQPW L+ +F +K AGTAGVRVE+L P +SV+ + N RRVQNHIG VHA MAL ESATG LVG+ VPD R+PL KSM ID+T+ + GD+ AVA L+ EQ+ + QEKGE V V +TD + EPI+A FVWAWVPK+R
Sbjct: 5 NNLSNLVHKIK-QAPQFLQPWLLTKLFGGAIKFAGTAGVRVEQLDPEQSVLTLKNRRRVQNHIGGVHAAAMALLGESATGFLVGIHVPDDRIPLLKSMHIDYTKRATGDLKAVASLTTEQIQFITQQEKGEVQVSVVITDTAQIEPIQATFVWAWVPKKR 163
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A1F4N727_9BURK (DUF4442 domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 TaxID=1797568 RepID=A0A1F4N727_9BURK) HSP 1 Score: 176 bits (445), Expect = 1.800e-51 Identity = 88/164 (53.66%), Postives = 117/164 (71.34%), Query Frame = 1
Query: 271 MGSPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
M PN++A V +++ LPA L+PWA+S + V L GTAG+R E++TP + V VAN R+VQNHI VHA GM L AE+ATG VGM+VPD +LPL KSM +DF R + G +TAVA L EQ+ + Q+KGE V V +TDESG++PI+AE +WAWVPK++
Sbjct: 1 MSRPNQLARTVARLQV-LPAGLRPWAISRLLGHAVPLVGTAGLRFEQITPQQVAVSVANRRKVQNHIRGVHAAGMVLLAETATGFCVGMNVPDDKLPLIKSMKVDFQRRAVGGMTAVASLRPEQIALMHAQDKGEVTVPVVITDESGQQPIQAEMIWAWVPKQK 163
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A1G4SMM3_9PSED (DUF4442 domain-containing protein n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1G4SMM3_9PSED) HSP 1 Score: 174 bits (440), Expect = 9.840e-51 Identity = 92/162 (56.79%), Postives = 120/162 (74.07%), Query Frame = 1
Query: 277 SPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
S N+++ +VGKI+ LP +LQ ALSL+F SQVK AGTA VRV LT ++V+ +AN R+VQNHI VHA MAL AESATG LVGM+VPD +LPL KS+ +D+ + + G + AVA L+ EQ+ A+ QEKGE V VTVTDE+G +PI+ E +WAWV K+R
Sbjct: 2 SSNRLSRIVGKIQ-QLPTALQSPALSLLFGSQVKFAGTAKVRVHTLTQQQAVMSIANKRKVQNHIKGVHAAAMALLAESATGFLVGMNVPDDKLPLIKSLKVDYLKRATGSLRAVASLTPEQIQAIHTQEKGEVLVAVTVTDEAGIQPIQCEMLWAWVSKKR 162
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: A0A7S2HF20_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF20_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.160e-50 Identity = 84/160 (52.50%), Postives = 116/160 (72.50%), Query Frame = 1
Query: 283 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
NK+AS+V K++ LP S P SL+FN+ VKLAGTAG+RVE+++ + V + N R +QNHIG +HAC MALAAESATGI+VGM+VPD+ +PL K+M +DF + QGD+ A LS+E + ++++G+ VQV V DE+G EPI+ E +WAWV K R
Sbjct: 7 NKMASIVQKMESYLPKSFHPLGYSLLFNNMVKLAGTAGLRVEKMSRNEVEVYLKNRRSIQNHIGGLHACSMALAAESATGIVVGMNVPDTHIPLIKTMNVDFVKRCQGDIRVKASLSDEDFVRIHEEDRGDVTVQVHVEDEAGNEPIKTEMIWAWVNKNR 166
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Match: UPI0012BD4878 (DUF4442 domain-containing protein n=1 Tax=Sansalvadorimonas verongulae TaxID=2172824 RepID=UPI0012BD4878) HSP 1 Score: 171 bits (434), Expect = 7.620e-50 Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 1
Query: 325 PASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANARRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRR 762
P ++ W +S M VKL GT R+E+LT + S + + N +R QNHIGSVHACGMALAAESATG++VGM+VPDSR+P+ KSM I+F + S GD+TA A L+EEQ+ +RD EKGE V TVTD G EPI E +WAW PKRR
Sbjct: 16 PKGMRVWLVSKMLGKTVKLVGTTKTRIEKLTSNESTITIRNLKRNQNHIGSVHACGMALAAESATGLIVGMNVPDSRVPVIKSMNINFVKRSAGDITARAHLTEEQVALIRDTEKGEVTVPCTVTDAKGVEPITVEMIWAWTPKRR 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig85.16579.1 >prot_E-siliculosus-1a_M_contig85.16579.1 ID=prot_E-siliculosus-1a_M_contig85.16579.1|Name=mRNA_E-siliculosus-1a_M_contig85.16579.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=167bp MGSPNKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPback to top mRNA from alignment at E-siliculosus-1a_M_contig85:32262..36631- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig85.16579.1 ID=mRNA_E-siliculosus-1a_M_contig85.16579.1|Name=mRNA_E-siliculosus-1a_M_contig85.16579.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4370bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:32262..36631- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:32262..36631- >mRNA_E-siliculosus-1a_M_contig85.16579.1 ID=mRNA_E-siliculosus-1a_M_contig85.16579.1|Name=mRNA_E-siliculosus-1a_M_contig85.16579.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:32262..36631- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |