mRNA_E-siliculosus-1a_M_contig85.16575.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig85.16575.1
Unique NamemRNA_E-siliculosus-1a_M_contig85.16575.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.730e-118
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 2 
Query:   29 GPQQTAIACYDDFVPILLGGTQSLLNGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAWVWLRIVGELYRIVLQTKRLFVGRVIAAIK 577
            GPQQTAIACYDDFVPILLGGT+SLLNGFLKRRKRDIALVVLTVILLVS  LLWPILFSLRVDGTTSMSWAAVWTPLWI DGIGLMFFVF+VSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQV+LV+RLDRHISWSWEEVLAPLMAWVWLRI GELYRIVLQTKRLFVGRVIAAIK
Sbjct:   15 GPQQTAIACYDDFVPILLGGTESLLNGFLKRRKRDIALVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIGLMFFVFIVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDRHISWSWEEVLAPLMAWVWLRIAGELYRIVLQTKRLFVGRVIAAIK 197
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.370e-73
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 2 
Query:  227 MSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAWVWLRIVGELYRIVLQTKRLFVGRVIAAIK 577
            MSWAAVWTPLWIAD IGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQV+LV+RLD HISWSWEEVLAPLMAWVWLRI+GELYRIVLQTKRLFVGRV+AAIK
Sbjct:    1 MSWAAVWTPLWIADSIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDHHISWSWEEVLAPLMAWVWLRIIGELYRIVLQTKRLFVGRVVAAIK 117
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.690e-38
Identity = 75/142 (52.82%), Postives = 100/142 (70.42%), Query Frame = 2 
Query:   95 SLLNGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAWVWLRIVGELY 520
            +++  FL+   RD   +V+ V+L V A LLWPILF  +VDG TS SW A+WTPLWI D +GL +F++L+S G IKAP   +  W DP+P+ +RVLALVKW LL LFQV L ++LD  I WS+  V +PL+AW+ L IVG +Y
Sbjct:  107 NMIKNFLRMGTRDRLRLVVFVLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALGLWYFMYLISLGQIKAPEGMEEGWTDPFPLPLRVLALVKWTLLFLFQVFLTMQLDGDIDWSYAVVGSPLLAWMGLLIVGHVY 248
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A7S2U8A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8A7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.790e-16
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 
Query:  188 PILFSLRVDGTTSM--SWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEW-QGEWRDPYPMSMRVLALVKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAW 490
            PIL  L+VD       SW AV TPLW+ D + L++   ++  GPI  P    Q EW DP PMS R+ +L ++ L+V+F+V+  +RLD+HI W W E+  P+  W
Sbjct:  107 PILVCLQVDNVFGKHSSWLAVLTPLWVWDAVILLYHSRVIMLGPIPKPDHIPQEEWVDPLPMSKRIFSLFRFLLVVIFEVLGALRLDKHIDWKWSEIFIPVYIW 210
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A7S1UVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVB4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.130e-14
Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 2 
Query:  176 WLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGE-WRDPYPMSMRVLALVKWGLLVLFQVILVIRLDRHIS-WSWEEVLAPLMAW 490
            WL  PI+  L VD     +WA    PLWI D     +   ++  GPI  P     E W DP PMS R+ +L ++GLLVLFQV++V+RLD  +S W W  V  PL  W
Sbjct:  142 WL--PIMVCLHVDDVLKATWAGTLLPLWIWDAFIFFYHSRVIMMGPIPRPDHISPEDWVDPLPMSKRIFSLARFGLLVLFQVLMVLRLDGVVSSWPWAVVFGPLYIW 246
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A2R5H1F3_9STRA (DnaJ protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H1F3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.090e-6
Identity = 45/145 (31.03%), Postives = 73/145 (50.34%), Query Frame = 2 
Query:  122 RKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTSMS------WAAVWTPLWIADGIGLMFFVFLVSWGPI-KAPAEWQGEWRDPYPMSMRVLAL------VKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAWVWLRIVGEL 517
            RKRD  ++V  +  +    LL+PIL S+R D     S      WA  + PLW+ + +  + F   V   P+ K+  E   + R  +  + RV         +K GL+++F++ LV++LD  + WSW  VL P+M +  + IV  L
Sbjct:   94 RKRDRFMLVFAISFVSFILLLFPILLSIRWDALEGGSDSKPYAWAVAFIPLWVLEVLVTVIFAEQVRQEPLDKSDPEVDDDVRAMWNENERVFNRLRIEFGIKMGLVLIFEIFLVLQLDEVVDWSWYVVLLPMMLYNAINIVLRL 238
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Match: A0A139AY67_GONPJ (DnaJ-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AY67_GONPJ)

HSP 1 Score: 60.5 bits (145), Expect = 1.890e-6
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2 
Query:  134 IALVVLTVILLVSAWLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMR--------------VLALVKWGLLVLFQVILVIRLDRHISWSWEEVLAP 478
            I ++V+   L +   LL+PI  SL++DG  S SWA +  P+WI D +      FL++  P K     +G+  +   +S R                 L+++GL+++ QV LV+RL   +SW W  + +P
Sbjct:  114 INVLVVVATLFILTLLLFPIFLSLQIDGHISWSWAVIGIPIWIFDVLAF----FLIAGAPTKGEHLDEGDDPNHSGLSQREREQARQRAARTAKYFNLLEFGLVLVAQVFLVLRLSGTVSWVWAAIFSP 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LBY5_ECTSI1.730e-11895.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW2_9PHAE6.370e-7394.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K446_9PHAE2.690e-3852.82J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S2U8A7_9STRA4.790e-1642.31Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1UVB4_9STRA3.130e-1442.99Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A2R5H1F3_9STRA1.090e-631.03DnaJ protein-like n=1 Tax=Hondaea fermentalgiana T... [more]
A0A139AY67_GONPJ1.890e-630.23DnaJ-domain-containing protein n=1 Tax=Gonapodya p... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig85contigE-siliculosus-1a_M_contig85:3019..6339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size378
Model size1043
Exons5
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0484@1,KOG0714@2759
EggNOG free text desc.protein folding
KEGG Pathwayko04218,map04218
KEGG koko:K10752
Seed eggNOG ortholog2880.D7G6F0
Seed ortholog evalue6.4e-26
Seed ortholog score123.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936296.5892467-UTR-E-siliculosus-1a_M_contig85:3018..34571622936296.5892467-UTR-E-siliculosus-1a_M_contig85:3018..3457Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 3019..3457 -
1696251013.4033878-UTR-E-siliculosus-1a_M_contig85:3018..34571696251013.4033878-UTR-E-siliculosus-1a_M_contig85:3018..3457Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 3019..3457 -
1622936296.6784186-UTR-E-siliculosus-1a_M_contig85:5681..58131622936296.6784186-UTR-E-siliculosus-1a_M_contig85:5681..5813Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 5682..5813 -
1696251013.4608936-UTR-E-siliculosus-1a_M_contig85:5681..58131696251013.4608936-UTR-E-siliculosus-1a_M_contig85:5681..5813Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 5682..5813 -
1622936296.695829-UTR-E-siliculosus-1a_M_contig85:6245..63391622936296.695829-UTR-E-siliculosus-1a_M_contig85:6245..6339Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 6246..6339 -
1696251013.4694705-UTR-E-siliculosus-1a_M_contig85:6245..63391696251013.4694705-UTR-E-siliculosus-1a_M_contig85:6245..6339Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 6246..6339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936296.6028888-CDS-E-siliculosus-1a_M_contig85:3457..35381622936296.6028888-CDS-E-siliculosus-1a_M_contig85:3457..3538Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 3458..3538 -
1696251013.4161677-CDS-E-siliculosus-1a_M_contig85:3457..35381696251013.4161677-CDS-E-siliculosus-1a_M_contig85:3457..3538Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 3458..3538 -
1622936296.623616-CDS-E-siliculosus-1a_M_contig85:4046..41541622936296.623616-CDS-E-siliculosus-1a_M_contig85:4046..4154Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 4047..4154 -
1696251013.4263158-CDS-E-siliculosus-1a_M_contig85:4046..41541696251013.4263158-CDS-E-siliculosus-1a_M_contig85:4046..4154Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 4047..4154 -
1622936296.6432705-CDS-E-siliculosus-1a_M_contig85:4937..50771622936296.6432705-CDS-E-siliculosus-1a_M_contig85:4937..5077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 4938..5077 -
1696251013.4391124-CDS-E-siliculosus-1a_M_contig85:4937..50771696251013.4391124-CDS-E-siliculosus-1a_M_contig85:4937..5077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 4938..5077 -
1622936296.6629126-CDS-E-siliculosus-1a_M_contig85:5632..56811622936296.6629126-CDS-E-siliculosus-1a_M_contig85:5632..5681Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 5633..5681 -
1696251013.452409-CDS-E-siliculosus-1a_M_contig85:5632..56811696251013.452409-CDS-E-siliculosus-1a_M_contig85:5632..5681Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 5633..5681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig85.16575.1prot_E-siliculosus-1a_M_contig85.16575.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig85 3458..5681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig85.16575.1

>prot_E-siliculosus-1a_M_contig85.16575.1 ID=prot_E-siliculosus-1a_M_contig85.16575.1|Name=mRNA_E-siliculosus-1a_M_contig85.16575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=126bp
MSWAAVWTPLWIADGIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRV
LALVKWGLLVLFQVILVIRLDRHISWSWEEVLAPLMAWVWLRIVGELYRI
VLQTKRLFVGRVIAAIKVRKKETSS*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig85:3019..6339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig85.16575.1 ID=mRNA_E-siliculosus-1a_M_contig85.16575.1|Name=mRNA_E-siliculosus-1a_M_contig85.16575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3321bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:3019..6339- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTCCTCTCTTCTTTTCTCGCACAACAGGGACCTCAGCAGACGGCCATCG
CTTGCTACGATGACTTCGTTCCCATTCTGCTTGGCGGCACTCAGGTGAAA
GCATTTACAGTCGATTCGATTACCCCTTAGCACGCCTCCCAGCGAGTAAT
ACATAAACCAGACGTATGACGTTGTCTTTTGTCTGCTCCCATATGGGCCT
TCACAGGATGTACCCGTCCCTTGGAAGCGCGCGTTGTTGCTCGAACAATC
CTTGGTCTCCTTCCCGACCATCCACGCCCTCGACCGGTCCTCAACAACAG
CCATATCACACAACTGCGGCTGCCACCCACCGGCAAGCCTCACTTAGGTG
CCTTATCCCTACGCTTGGGGAAACACCTATGATGTATTTTGGTAGGGAAG
ACTGCTGTGTGTGCATGCGTGTGCACGTTACGCTGAGTCTTCAACGGCAA
ACATGCCGGCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TCGCTGCACACGTTGGGACCAAACAGTCTCTGCTGAACGGCTTCCTCAAG
AGACGCAAGCGAGACATCGCGTTGGTGGTGCTCACGGTCATTCTTCTGGT
GAGCGCGTGGCTGCTGTGGCCCATCTTGTTCTCCCTGAGGGTAGACGGGA
CGACCTCCATGTCCTGGGCGGCCGTGTGGACCCCTCTGTGGATTGCCGAT
GGCATCGGTAAGACACGCCAGTGCAGGACGAGAGCTTTGTTTTTTAGAAG
TATACAAAAAATAATGTTTCAACGCGAGATCCCCTCAGGAATGTCAGGAT
GGCATTCGTGCGTGGCTTCCAACCACGATGCCGTTTCCTAGTTCGTTCTC
TTTAGGGGTATATTTCTAGACAGTTCCAGATATTCCCCCACCATGGCGGT
TGATGTTGCTGTAGAGGAAGTTCATGTCACTCTAAGTTTCGGAATGGTTA
GACCTTGTGCACGGCAGCAGAGACGAGGAATCAGCAGACCATTGTTCTTA
TCACAAAGTTCGTTCCATCGCCTGCTGTAAATAGGTATGGTTGACGCCGC
CTCCTTCTGTCAGGTGTTGATTGTGTAACTTTTTTTATGTTTTCGTAGGT
TCAGTTGTTTTGGCGCTTTCAATGTCGTCGTTCTTCCCTTGCCGGTTTAT
CGCGGGCTTGGCACTTCTGCTAGAAATTGTTGGTGCTGCCCATGTGTGCA
TCGTTTTTTTTCTTCACCACTACTACAGGGTTGATCGATTTTTTGCTCCA
CCGCTACTACAGGGTTGATGTTCTTCGTATTTCTAGTGAGCTGGGGACCC
ATCAAGGCCCCGGCCGAGTGGCAGGGCGAGTGGCGAGACCCTTACCCGAT
GTCGATGAGGGTGCTTGCGCTCGTGAAGTGGGGGTTGCTCGTTTTGTTTC
AGGTGTGTTACCTTGACCACGTCCACCGCTTTCGGCGACGCGGCTATTAC
CTGAGCTAGATGCCACTGTTTTGGTTCCTTCGGCGTCCTTAGGCGCCCCC
TGCTGTAGGCTTTGCGTGATTTTCTCTTGCCAGATGCTAATATTCTGTAG
TGTTGTGTGCGTTTTTCAAGTAGGCGCATAATTCACTAACAGATTTCGTG
CGACGGCGAGGCGTGGCGTGACGCGGCGAATGATGTGTGCTGTTTCCGGC
CTATTGTCTTCGGAAATCAAGGCTGTCCGACTACTGTTGGGTCAATGTAC
ATGCACAGGTTTGGGTTCCCCCTACCTGCCTTGATACGGCGGGCCTGGCG
AAACACGGCACTTGGCACGCGCATAGACGGACTTGCCCTTCGCATCTAGC
ACGTTCCTATCCGCTGCCTTGGTGTCTTTACTGGGTGTCCTTTGCTCTGG
CGTTGAAACTACTGCTCTCTCCTCCGCGCATGTCGGCGATCAACGAACTA
CGTTGAGCACCTTGCACGTCCATGGAAAGACGCAATACTCCCACAGTGCT
TTCTGGCTCAATGCAGTCGTGACCTTAACCCATTCAAGTGCCAAGGCGGT
AATCGTTTCTCGTTCTGTACTGCTGATCATGTCTTTGTCACTCATTAGGG
TTGAGTGCAAACCGACGCGTACGTAGCTGCATAACTCTACGTTAGTTTTC
ACCGTAGCGGCACTCACCCCTTGATTCCAACCCTGTAAATGAGCCAATGT
TAAAGACAAACCGTCCCTGCACACGACAAGCGCAGGTAATCCTAGTTATT
AGGTTGGACCGCCACATCAGCTGGTCTTGGGAGGAAGTCTTGGCGCCGCT
CATGGCGTGGGTCTGGCTACGGATTGTTGGAGAGCTGTATAGGGTGCGTG
TGGTGAATGCAATACCGGTTAAACTTTGGTGGCGCTGCAAACTTCGGGGC
CGTTGGATGGAATAAGAAGCTAGAGAGATCACCTGGTTTCGGTGGTTGGT
ACTTGTTCAGCGTACACAGTGTAAACCGTCTGGCGTTTCAAAACAAGCCA
AGTTGCGTCTCTGTGGAAAAGTTGAAGACCGTCGTTATCCGACGGCTGCC
CCGACATATTTGAAATCCTAGTCACTGGATTGGGCGGCCTGCCTCCATGT
TTAGGGTCGCTTTTGGTAGGTCATGCTTAACATGCCAACTCCACAAGTTG
AATACCGCGATGCGTGATGAATCCAATCCCGCAGAATCGCCCATTCTCGA
TTGCTCCGGGGGCGACCAGGGACGGCCACGTGCCTATCTCCGACGTGATG
CTTTGTCATTGAGCTTCACCCTTTCCTACTCAAACCTAACCCCACACAAC
ATCCCGCTGGCATTGCTTCTCTGGCCGTCTCGTTGTTTCTCATGGGAGCA
GATTGTGCTTCAGACGAAGCGGCTGTTTGTGGGCAGAGTCATCGCCGCTA
TCAAGGTGAGGAAGAAAGAGACGTCGAGCTGAAAACACGTCGAGGGAAAC
AGCGATGTATACCGCTCACACGTGCAACGCTGTCGAACAGAGAACCGTCG
ACTCGGTAGATCCTTTGGCACCTCATGCTCTGTTCAGGACACAGTTCATC
ATCCCTGTTCAGGATACGGTTCCAGTATGAGGCATGTCTCGTCAATGGTA
TCGTAATCGTTTGGGAAGGCGCACAGTTTTGATGCCGTCGACAACTTTGG
CATTAACAACAATACACGTGTGTCGATGATACATATCATGTCGGTTGTCG
TTTGAACGACTTTCGGTTCTGCAACAATGATGGAAAGTGTTCGCCTCTAC
GGGAGCGCTCCGGTTTGTTCTCCTTGGTCCACGTACTCTTGGATTGCATC
GCCGACGAAACAACCTCGAACAATAGCACACCCCTGATGAAACATACCCG
CTTTTTCTTGACATGCTCCCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:3019..6339-

>mRNA_E-siliculosus-1a_M_contig85.16575.1 ID=mRNA_E-siliculosus-1a_M_contig85.16575.1|Name=mRNA_E-siliculosus-1a_M_contig85.16575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:3019..6339- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTGGGCGGCCGTGTGGACCCCTCTGTGGATTGCCGATGGCATCGA
TGTCCTGGGCGGCCGTGTGGACCCCTCTGTGGATTGCCGATGGCATCGGG
TTGATGTTCTTCGTATTTCTAGTGAGCTGGGGACCCATCAAGGCCCCGGC
CGAGTGGCAGGGCGAGTGGCGAGACCCTTACCCGATGTCGATGAGGGTGC
TTGCGCTCGTGAAGTGGGGGTTGCTCGTTTTGTTTCAGGGTTGATGTTCT
TCGTATTTCTAGTGAGCTGGGGACCCATCAAGGCCCCGGCCGAGTGGCAG
GGCGAGTGGCGAGACCCTTACCCGATGTCGATGAGGGTGCTTGCGCTCGT
GAAGTGGGGGTTGCTCGTTTTGTTTCAGGTAATCCTAGTTATTAGGTTGG
ACCGCCACATCAGCTGGTCTTGGGAGGAAGTCTTGGCGCCGCTCATGGCG
TGGGTCTGGCTACGGATTGTTGGAGAGCTGTATAGGGTAATCCTAGTTAT
TAGGTTGGACCGCCACATCAGCTGGTCTTGGGAGGAAGTCTTGGCGCCGC
TCATGGCGTGGGTCTGGCTACGGATTGTTGGAGAGCTGTATAGGATTGTG
CTTCAGACGAAGCGGCTGTTTGTGGGCAGAGTCATCGCCGCTATCAAGGT
GAGGAAGAAAGAGACGTCGAGCTGAATTGTGCTTCAGACGAAGCGGCTGT
TTGTGGGCAGAGTCATCGCCGCTATCAAGGTGAGGAAGAAAGAGACGTCG
AGCTGA
back to top