mRNA_E-siliculosus-1a_M_contig84.16571.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI) HSP 1 Score: 849 bits (2193), Expect = 1.270e-289 Identity = 860/1069 (80.45%), Postives = 866/1069 (81.01%), Query Frame = 3
Query: 372 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEAGRREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNILNHQVVPTSYSLKLLTQRSRQVQEVGGWVEYFDPDTSAFWYLENSTKRSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRRVFTNMAEFQAHRLNAHPWQCASCGQRNSGMTFPRCELCDSKVGPDGQDLEKVVGEAVRAAFRKMRNPPLEPVTGRGNESVNTDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRAPQGGAHSTVQDILPTKSASKTTGVPRRKDVANGVLADREGVGGAVLRARTVSDDGRGGGGT---SITTTLGSGTTASPGMKLRVCHKFTQGRCTLSTCPRAHPGIRDDAKLQRLETKGSRGLFQVS--------------------------------VCPRALAAALGDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNGERTKVYPSGASLKGTVVNEVFQGYGVYSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSPGGRERYVXXXXXXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEIHGRGRLTICPDSILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSFXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 3473
MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEA RREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXX QVV TSYSLKLLTQRSRQVQEVGGWVEYFDPDTSAFWYLENSTK STWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCR+VFTNMAEFQAHRLNAHPWQCAS GQRNSGMTFPRCEL DSK DILPT+SASKTTGVPRRKDVANGVLADREGVGGAVLRA SITTT+GSG TASPGM LRVCH+FTQGRC LSTCP AHPGIRDDAKLQRLETKGSRGLFQVS VCP ALAAA GDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNG+RTKVYPSGASLKG VVNEVFQGYGVYSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSPGGRERYVXXXXXXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKG LRWENGSR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEIHGRGRLTICP SILEEVYDGDFVRGIKHG+GVYVYRKGDGLVXXXXXXXXXXXXXXLLRFAD SF XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY
Sbjct: 1 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEADRREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXXTEERWKQL-----------QVVRTSYSLKLLTQRSRQVQEVGGWVEYFDPDTSAFWYLENSTKHSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRKVFTNMAEFQAHRLNAHPWQCASWGQRNSGMTFPRCELWDSK---------------------------------------------------------------------------------------------------DILPTRSASKTTGVPRRKDVANGVLADREGVGGAVLRAAXXXXXXXXXXXXXXXSITTTIGSGATASPGMNLRVCHRFTQGRCNLSTCPHAHPGIRDDAKLQRLETKGSRGLFQVSQTYGSGVENDDDVESLLRRMGDGGVGTPPPPKVCPLALAAAFGDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNGDRTKVYPSGASLKGRVVNEVFQGYGVYSWPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSPGGRERYVXXXXXXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGRLRWENGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEIHGRGRLTICPGSILEEVYDGDFVRGIKHGNGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADDSFYKGQFHRERKHGTGCMVWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 959
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE) HSP 1 Score: 258 bits (659), Expect = 3.190e-73 Identity = 321/330 (97.27%), Postives = 321/330 (97.27%), Query Frame = 3
Query: 2484 FANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEIHGRGRLTICPDSILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSFXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 3473
FANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISG GEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RGRLTICP SILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSF XXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY
Sbjct: 30 FANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGLGEIKYEVAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRLTICPGSILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSFYKXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 359
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: A0A835ZHY7_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY7_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.960e-42 Identity = 66/127 (51.97%), Postives = 88/127 (69.29%), Query Frame = 3
Query: 708 QVVPTSYSLKLLTQRSRQVQEVGGWVEYFDPDTSAFWYLENSTKRSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRRVFTNMAEFQAHRLNAHPWQCASCGQRNSGMTFPRCELCDSKVGPDGQD 1088
QV PT YSL L+ QRSR+VQ + GW EYFD D + FWY++N+T+RSTW+AP+ F +++TC WDPWP PY ++PCR+ F EFQ HR AH WQC +C N+ ++FPRC LC S + +D
Sbjct: 102 QVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWDAPEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQCLACEAINAALSFPRCALCGSGSAMNARD 228
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: A0A6H5L5Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y0_9PHAE) HSP 1 Score: 138 bits (347), Expect = 6.960e-35 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 3
Query: 372 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEAGRREQAATAMQAAYRGWEGRQIAADRR 584
MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEA RREQAATAMQAAYRGWEGRQIAADR+
Sbjct: 1 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEADRREQAATAMQAAYRGWEGRQIAADRQ 71
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: A0A7S3MJB2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJB2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.620e-15 Identity = 54/134 (40.30%), Postives = 69/134 (51.49%), Query Frame = 3
Query: 1545 TTASPGMKLRVCHKFTQGRCTLSTCPRAHPGIRDDA----KLQRLETKGSRGLFQ-VSVCPRALAAALGDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNGERTKVYPSGASLKGTVVNEVFQGYGVYSW 1931
T A KL VC KF G CTL+TCP AHPG+RD + K R G + + V +CP C +G C+ YH Y+RPST EI+ IYP G + K + S A L G V +F GYGV ++
Sbjct: 53 TMAKAKQKLTVCSKFLAGTCTLTTCPLAHPGLRDSSRPKQKTLRDPVSGEKVVTHYVYLCPEVTPLCNN-----CHNGNACRNYHVYIRPSTQEIILAIYPILTGRKIKDFGS-ARLVGNVFRGLFDGYGVMTY 180
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Match: A0A7S1XUI8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUI8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 7.300e-10 Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query: 1752 CPSGQGCKMYHPYVRPSTDEIVARIYPRRNGERTKVYPSGASLKGTVVNEVFQGYGVYSW 1931
CP G CK YHPYVRP+T+EI+ +IYP NG +T SGA+L+G +N+ G+GV W
Sbjct: 234 CPFGVECKCYHPYVRPTTEEIIQKIYPISNGFKTITLASGATLQGNAINDEISGWGVMRW 293 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig84.16571.1 >prot_E-siliculosus-1a_M_contig84.16571.1 ID=prot_E-siliculosus-1a_M_contig84.16571.1|Name=mRNA_E-siliculosus-1a_M_contig84.16571.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1035bp MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEAGRREQAback to top mRNA from alignment at E-siliculosus-1a_M_contig84:709736..727781+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig84.16571.1 ID=mRNA_E-siliculosus-1a_M_contig84.16571.1|Name=mRNA_E-siliculosus-1a_M_contig84.16571.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=18046bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:709736..727781+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:709736..727781+ >mRNA_E-siliculosus-1a_M_contig84.16571.1 ID=mRNA_E-siliculosus-1a_M_contig84.16571.1|Name=mRNA_E-siliculosus-1a_M_contig84.16571.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6210bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:709736..727781+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |