mRNA_E-siliculosus-1a_M_contig84.16570.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16570.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16570.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: D7FWY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWY8_ECTSI)

HSP 1 Score: 403 bits (1036), Expect = 1.290e-137
Identity = 224/228 (98.25%), Postives = 225/228 (98.68%), Query Frame = 1 
Query:    1 MLVLNKLCFVLSASSRLSGRRGVAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXAEWPNPAAFNALSHSSRSKIYCDYGDEGGMTWKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRLTT 684
            MLVLNKLCFVLSASSRLSG+R VAKTAXXXXXXXXXXXXXXXXXXXXXXXXXX AEWPNPAAFNALSHSSRSKIYCDYGDEG MTWKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRLTT
Sbjct:    1 MLVLNKLCFVLSASSRLSGKRAVAKTAXXXXXXXXXXXXXXXXXXXXXXXXXX-AEWPNPAAFNALSHSSRSKIYCDYGDEGSMTWKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRLTT 227
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A5J4YPW8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YPW8_PORPP)

HSP 1 Score: 201 bits (512), Expect = 5.100e-59
Identity = 103/172 (59.88%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:  166 EWPNPAAFNALSHSSRSKIYCDYGDEGGMTWKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYD-EKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRL 678
            +W N    N+ S+S RS        +        +E  + P+PPFT ETAL+K KAA+AAWN+RDPA VA AYS D+VWRNR EIF GR E++AFLTRKW KE  Y L+K+LW+F  NRI  RFEYEW D    QWYRTHGNE WEFD+ GYMRWRDMSAND PI E+ERRL
Sbjct:   29 DWTNEHELNSTSYSLRSSDSAP-SRQWHFLGPLLDEGARMPVPPFTRETALQKVKAADAAWNSRDPATVARAYSVDSVWRNRTEIFRGRTEIEAFLTRKWCKETEYVLEKNLWAFSENRIGVRFEYEWKDVAANQWYRTHGNELWEFDERGYMRWRDMSANDFPIHESERRL 199
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A835YWJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ5_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.460e-59
Identity = 105/182 (57.69%), Postives = 123/182 (67.58%), Query Frame = 1 
Query:  178 PAAFNALSHSSRSKIYCDYGDEGGMTWKPH--EEPPKHPLPPF-TAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKG------------QWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRL 678
            P  FN L    +SK Y D  + G + WKP   + P + PLPPF T   AL+K KAAE AWNTRDP +VAAAYS DTVWRNRDE   GR+ V+AFL RKW++E  YRL+KHLW+  G RI+ RFEYE+Y E+             QW R HG E WEFDD GYMRWRDMSAND+PI E+ERRL
Sbjct:    5 PKNFNDLEVGPKSKRYMDAAEAGKLKWKPPAADLPDRLPLPPFKTKAQALQKVKAAEDAWNTRDPERVAAAYSADTVWRNRDEFLHGRDAVRAFLERKWARESRYRLRKHLWAHSGRRIAVRFEYEYYCEEXXXXXXXXXXXXXQWRRAHGIELWEFDDKGYMRWRDMSANDVPIAESERRL 186
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A7S1THY9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THY9_9RHOD)

HSP 1 Score: 196 bits (499), Expect = 5.900e-58
Identity = 92/135 (68.15%), Postives = 105/135 (77.78%), Query Frame = 1 
Query:  271 EPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERR 675
            +PP+ P+P FT ETA  K +AAE AWNTRDP +VAAAY+ D+ WRNRDE F GR  +  FL RKW+KE  YRL K LW ++GNRIS RFEYEW+D  GQWYRTHGNEHWEFDD GYMR RDMSANDIPI   +RR
Sbjct:    4 DPPRLPVPTFTEETARAKVQAAEDAWNTRDPERVAAAYTIDSEWRNRDEFFRGRPAIVEFLRRKWAKELDYRLMKELWCYQGNRISVRFEYEWHDHDGQWYRTHGNEHWEFDDAGYMRRRDMSANDIPILREDRR 138
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A5J4XW98_9CHLO (Hisitidine kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XW98_9CHLO)

HSP 1 Score: 196 bits (498), Expect = 8.050e-58
Identity = 92/135 (68.15%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:  271 EPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERR 675
            EP K P+PPFT ETA KK KAAE AWNT DPAKV+ AY+PD+ WRNRDE F GR+ ++AFLTRKW KE  Y+L K LW ++GNRIS RFEYE++D  GQW+R HGNEHWEF+D GYM  RDMSAND  I E+ERR
Sbjct:    3 EPNKPPVPPFTLETATKKVKAAEDAWNTCDPAKVSMAYTPDSKWRNRDEFFEGRDAIKAFLTRKWEKELQYKLMKELWCYQGNRISVRFEYEYHDHSGQWWRAHGNEHWEFNDQGYMLRRDMSANDFIIQESERR 137
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A6T6NQP1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NQP1_9RHOD)

HSP 1 Score: 195 bits (496), Expect = 5.300e-57
Identity = 97/166 (58.43%), Postives = 121/166 (72.89%), Query Frame = 1 
Query:  184 AFNALSHSSRSKIYCDYGDEGGMT-WKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKG--QWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENER 672
            + N+L  S +S +Y    ++G +  ++ H++P + PLPPF  ETAL+K KAAE AWNT+DP KV  AY+PDTVWRNRD IF GR+EV+ FL+ KW KEQ Y+L K+LW + GNRI ARF YE Y  +G  QWYR HGNE WEFD  GYM  RDMS NDIPIDE++R
Sbjct:    9 SLNSLDISKKSTLYTFIAEKGPIAGFQSHDDPARMPLPPFNEETALQKVKAAENAWNTKDPEKVCLAYTPDTVWRNRDHIFCGRDEVKRFLSNKWEKEQDYKLVKNLWCYSGNRIGARFTYE-YRLQGTDQWYRCHGNELWEFDGRGYMMHRDMSGNDIPIDESDR 173
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: UPI0019C80FCD (Nuclear transport factor 2 family protein n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019C80FCD)

HSP 1 Score: 193 bits (491), Expect = 8.570e-57
Identity = 92/128 (71.88%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:  292 PPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERR 675
            PPFT ETA  K KAAE AWNTRDP  VA AY+PD+ WRNR E F GR+E++AFL RKW++E  YRL K LW+F  NRIS RFEYEW+DE GQWYRTHGNEHWEFDD G MR RDMSAND  IDE ERR
Sbjct:    7 PPFTEETARAKVKAAENAWNTRDPEIVARAYTPDSEWRNRTEFFTGRDEIKAFLRRKWAQELDYRLMKELWAFTSNRISVRFEYEWHDETGQWYRTHGNEHWEFDDEGLMRRRDMSANDYKIDEAERR 134
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A7S0T4L7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4L7_9RHOD)

HSP 1 Score: 196 bits (497), Expect = 1.430e-56
Identity = 99/171 (57.89%), Postives = 118/171 (69.01%), Query Frame = 1 
Query:  187 FNALSHSSRSKIYCDYGDEGGMTWKPHEEPP---KHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQ----WYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRL 678
            F++  +S RS             W P   P    + P+PPFTA+TAL K KAAEAAWN+RDP KVA AYS D+VWRNRD+IF GRE +++FL  KW +E  YRL+K+LW F  NRI+ RFEYEW D   +    WYRTHGNE WEFD+LGYMRWRDMS NDI ID+ ERRL
Sbjct:   47 FSSTEYSHRSSASRSNAMFDPWEWDPAPLPELLKREPVPPFTADTALLKVKAAEAAWNSRDPEKVALAYSLDSVWRNRDQIFRGREAIKSFLRSKWQRELDYRLEKNLWCFSANRIAVRFEYEWRDALSEAQATWYRTHGNELWEFDELGYMRWRDMSGNDIRIDKAERRL 217
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A2R6W6S5_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W6S5_MARPO)

HSP 1 Score: 190 bits (483), Expect = 1.200e-55
Identity = 89/130 (68.46%), Postives = 103/130 (79.23%), Query Frame = 1 
Query:  289 LPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENERRL 678
            +PPFT ETA  K +AAE AWN+RDPA+V+ AY+ D+ WRNR EIF GRE+++ FL+RKW  E  YRL K LW + GNRIS RFEYEW+D  GQWYRTHGNEHWEFDD G MR RDMSANDIPI  +ERRL
Sbjct:    6 VPPFTEETARAKVQAAEDAWNSRDPARVSMAYTEDSEWRNRTEIFKGREKIREFLSRKWQTELEYRLMKELWCYTGNRISVRFEYEWHDSAGQWYRTHGNEHWEFDDEGLMRRRDMSANDIPIHAHERRL 135
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Match: A0A6G0XCZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCZ0_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.530e-55
Identity = 96/172 (55.81%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:  163 AEWPNPAAFNALSHSSRSKIYCDYGDEGGMT-WKPHEEPPKHPLPPFTAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAFLTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYD-EKGQWYRTHGNEHWEFDDLGYMRWRDMSANDIPIDENER 672
            A W + A  NALS S++S +Y     +G +  +  + E P+ P PPFT ETAL+K KAAE AWN+RD A+V+ AY+ DTVWRNRDEIF GR+ V  FLTRKW  E  Y+L K+LW ++GNRI+ RF YE+     GQW+R HGNE W+FD+ GYM+ RDMS NDIPIDE +R
Sbjct:    4 ASWKSLAHLNALSKSAKSTLYTAETAKGPLQDFAANVETPRAPFPPFTRETALQKVKAAEDAWNSRDAARVSLAYTQDTVWRNRDEIFVGRDAVVEFLTRKWVGETNYKLVKNLWCYDGNRIAVRFTYEYQRVSDGQWFRCHGNELWQFDEQGYMQHRDMSGNDIPIDEKDR 175
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWY8_ECTSI1.290e-13798.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5J4YPW8_PORPP5.100e-5959.88Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A835YWJ5_9STRA6.460e-5957.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1THY9_9RHOD5.900e-5868.15Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4XW98_9CHLO8.050e-5868.15Hisitidine kinase n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]
A0A6T6NQP1_9RHOD5.300e-5758.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI0019C80FCD8.570e-5771.88Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A7S0T4L7_9RHOD1.430e-5657.89Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A2R6W6S5_MARPO1.200e-5568.46Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A6G0XCZ0_9STRA3.530e-5555.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:699621..703811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size687
Model size1380
Exons4
Ec32 orthologEc-15_001040.1
Ec32 ortholog descriptionProtein of unknown function DUF1348
Hectar predicted targeting categorymitochondrion
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2S04W@2759,COG3558@1
EggNOG free text desc.Protein of unknown function (DUF1348)
KEGG koko:K09958
Seed eggNOG ortholog2880.D7FWY8
Seed ortholog evalue3.1e-111
Seed ortholog score407.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16570.1prot_E-siliculosus-1a_M_contig84.16570.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 699621..703118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936295.0289083-CDS-E-siliculosus-1a_M_contig84:699620..6999021622936295.0289083-CDS-E-siliculosus-1a_M_contig84:699620..699902Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 699621..699902 +
1696251012.743122-CDS-E-siliculosus-1a_M_contig84:699620..6999021696251012.743122-CDS-E-siliculosus-1a_M_contig84:699620..699902Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 699621..699902 +
1622936295.0479121-CDS-E-siliculosus-1a_M_contig84:700900..7010451622936295.0479121-CDS-E-siliculosus-1a_M_contig84:700900..701045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 700901..701045 +
1696251012.7570364-CDS-E-siliculosus-1a_M_contig84:700900..7010451696251012.7570364-CDS-E-siliculosus-1a_M_contig84:700900..701045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 700901..701045 +
1622936295.0667057-CDS-E-siliculosus-1a_M_contig84:702217..7023031622936295.0667057-CDS-E-siliculosus-1a_M_contig84:702217..702303Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 702218..702303 +
1696251012.766892-CDS-E-siliculosus-1a_M_contig84:702217..7023031696251012.766892-CDS-E-siliculosus-1a_M_contig84:702217..702303Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 702218..702303 +
1622936295.0800302-CDS-E-siliculosus-1a_M_contig84:702944..7031181622936295.0800302-CDS-E-siliculosus-1a_M_contig84:702944..703118Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 702945..703118 +
1696251012.785284-CDS-E-siliculosus-1a_M_contig84:702944..7031181696251012.785284-CDS-E-siliculosus-1a_M_contig84:702944..703118Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 702945..703118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936295.09802-UTR-E-siliculosus-1a_M_contig84:703118..7038111622936295.09802-UTR-E-siliculosus-1a_M_contig84:703118..703811Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 703119..703811 +
1696251012.8033555-UTR-E-siliculosus-1a_M_contig84:703118..7038111696251012.8033555-UTR-E-siliculosus-1a_M_contig84:703118..703811Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 703119..703811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16570.1

>prot_E-siliculosus-1a_M_contig84.16570.1 ID=prot_E-siliculosus-1a_M_contig84.16570.1|Name=mRNA_E-siliculosus-1a_M_contig84.16570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=229bp
MLVLNKLCFVLSASSRLSGRRGVAKTAAAAAAGSFSPTCCRMSSSDPASA
AAAAAEWPNPAAFNALSHSSRSKIYCDYGDEGGMTWKPHEEPPKHPLPPF
TAETALKKTKAAEAAWNTRDPAKVAAAYSPDTVWRNRDEIFAGREEVQAF
LTRKWSKEQGYRLKKHLWSFEGNRISARFEYEWYDEKGQWYRTHGNEHWE
FDDLGYMRWRDMSANDIPIDENERRLTT*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig84:699621..703811+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16570.1 ID=mRNA_E-siliculosus-1a_M_contig84.16570.1|Name=mRNA_E-siliculosus-1a_M_contig84.16570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4191bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:699621..703811+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTCGTGCTCAACAAGCTGTGCTTCGTGCTCTCCGCCTCCTCGCGGTT
GTCAGGGAGGCGAGGCGTCGCAAAGACCGCCGCAGCAGCAGCGGCGGGAT
CCTTCTCACCAACCTGCTGCAGGATGTCGTCGTCTGATCCAGCTTCAGCG
GCGGCAGCAGCAGCCGAGTGGCCGAACCCCGCCGCGTTCAATGCCCTGTC
CCACAGCAGCCGCAGCAAGATCTACTGCGACTACGGGGACGAGGGGGGCA
TGACCTGGAAGCCCCACGAGGAGCCCCCCAAGGTCTGTACGATGCTTCTT
GTTTCGCGTGTTGATCCTTCCTTGTGACACCCCCGGGTGGTGGGCGCACA
GCGGAAGTATTGTACCCAATGTGCATTTTACCCTCCGGCAACCCGCTCTA
TGCGAGGCGAACAGGATACGACGACCTTTTCACTCCCGCAGTCCAAAGTT
TATGTATGATCAGTTGGGGGGTTGAGGCGTGTGCTTATCTTCATGCTCCA
GCGTTGAGCACAGCACTGCATAACAACAGGCGCCCGGCATACAGTAGTCT
GCACGTAAATGGGGAGGAAGAAAAACTGAGACCAAACGTGAAGGTATTGC
GGTGGATCTGAGACGATGTTGGCACCCCCGGCACCACACTGACACGTCGT
GTGCTCATGCTGCTGAGCGTATTTTGCACGTGAGTGTCGGGTTGGTACTG
AGGTAGAGCTCCATTGGCGCACACACGAAATAGCGGCGGCAGAACCAGCA
GCACCAGTGCTGGCACTGCTGTTTAACTTGAAAGTTCGGGAGATAAACGT
ACTAACGCCCCGATTATCCGCTTGGGCCGAACAACTTGTTTAAAATACAT
ACCCACCACGTTGGGGTCGCTGCTGTACATAGCTCAGTTTCGGTAGGGGC
ACTGCACCGCATATTGCGCTTGTTCCTACGCACATCACCGTCTGCCGCGC
GGCAGCAATGTGCACCCCCACTTCTGGAAGCAGAGCGTCATCCCATGGCC
CATGCGCCTTTCGCTCACTTGAAGAAACAAATATTCATTGTCAACGCTCG
GCTACCCCTGCAGCCGAGCAAGCAAGCACCGTCCGTACCATTCGGACAAA
GCCCGTTAACATAGGATAGGCGTTCATGCTGCAAAAATCCAGAGGACCAA
CATTCTGATGTTGCCAAATAGATGTAGGAGTGCCCCCCCTGAATGTTACC
GGGCATCACATACGCCCCCCTCCCAACCCCTCACTGCTCTACGTTATCTG
CTTGCACATGCACATGCACGCGCCCCACAGCACCCCCTGCCGCCGTTCAC
TGCGGAGACCGCTCTGAAGAAGACCAAGGCAGCGGAGGCGGCGTGGAACA
CCCGGGACCCGGCGAAGGTCGCCGCTGCTTACAGCCCGGACACGGTCTGG
AGAAACAGGGACGAGATATTCGCAGGTGCGTAGGTACACACCAGAACATA
TAAGAGTACGTACCTCGGCGAACTGCGAAATGCTTGTGTTGTTTTTTTTC
TGTCTGTGAGCGTCGTCTGAGCGATGTGGATGTATGTTGCAGCATTTGTG
GGTGCTTATTAATGAGCCGGAACATGCTCGGATCGTGTTTCCTGGCGTAT
CGGTACCGCACGGACCTTTGTTTTGCTTTTTCAGGGCTTCGAGAGGAAGA
TGTGGGAACGACAAAACCTGTCTCGACTGACAACAGAAGCGTGGTTTCAT
TAGTCTACAGTCGTCTTGTTGTCCCGCTACTGCCCATCGCCTGCAGCATT
ATCGAGCCTACCGCTTGTTCTCCCCCGTTTCACAACATCGACCTACTGCC
GTGCCCTGGCTACGTCATTGTCAACCGCAACAAGCAGAGAGGGATTCTGT
CATGTGCTAGGATTTGTTTCTTGTGACAGCCGGCATCAGCAGTATGTATC
CCAACCGACGAGGTCAAGGTCCGGGGGGTGGTTCTGATTGGTCCAGCAGC
CCTCCCGCAGGGTTTTTCTATGAAGTAAGCATGTTGGATAAAACATGAAA
TTGGGCAAGTTGGGTTAGGGTTAGGGTTAGAGAATACGGTCTGCGTCCCC
CCCCCTGTTCTATTTCCTTATGCTTTATTTCTCGCGAAGGCGGTCCGATT
GGTCACCTACAGCTGTGGTGGTTGCATGCACGTTTTACCGTATACCTCTC
CGTTTGATTCCGGCTTAACGGGAAAATATTGAGACAAGGGAATTAATTGT
GGACTTTAGGTTGAATTTCGTGCCGGTGTGGTTTCACCCATGCCCTCGCC
TGCGAATCAAACAGGCTAGAGAGAGAAACAACCCAACTTCGAAGAACTAG
GTTATCGTGTGCTGAGGCCTTGGGTCGAATAGGTTAAGGCTTTAGTTCGA
GAAAGAAAAGGAAACGAAGGAGCAAACATGACGCAAATGCGTGTAAGGTT
CAAGAGCCCGTGAAAGTGACCTCTCAAGAACTCAAAAGGGGCTGATGTTT
TTTCTTGCGTGTGTTTGTGGAGGTGCCCTTGGTGGAGATGACCTTTGTAA
CCGGTTACACCTCTCCAACGACTATCGAGGACTATTCCTTTTACTGACTT
GATCTGATTTTGGTGCTCTGATTTTGGTGCTCTGTTTGTCTTCAAAGGGC
GGGAGGAAGTCCAGGCCTTCCTGACACGCAAGTGGAGCAAGGAGCAGGGG
TACCGCCTCAAGAAGCACCTCTGGTCGTTCGAGGTGTGTTGTTGTTGTTG
TTGTTGTCGTTGTTGTCGTTGTTGTTGCTGCTGTTGCTGCTGTTTTTTGT
GATGTTGCCGCCGTTGCGTGGGTTTTGCAAGGAGATTGTGAAGATTTCCC
GAACTAGTTTACCTCATGAAAATATCTTCTTGTTTAACATCGGAGTAAAA
GGAGGCTATGCGAGGGAACTTTCATGTTGCCACATGCATACGATAACTTT
GTAATACCGCCTCGCTGGGCAGGTCTGCTTACGATAGGCAAGGTAAAATC
AACCCACGTTGTCTGCGTACTCCACCAGTGTGTCTCGCTCTGCCCACCCT
GTCCCACGTTTGTGAACACCTCACTCACTTGAGGGTGGGTATCCTACGGT
AAGGAAGGTAGACAACAACCCAACATCCACGCCATCGATCGGGTAGTAGT
CGAATGAGAACAGCAATGATCTGCAGCACCCGGGTTAACGAGTAGCACAA
TATTTTCACCCGATCCAATCCAACACATACGGCGGCCGAAACAACCAGAA
CCACAACTGCCGGAGTACCCCTAGCTCCGCACACACGCAGCCATCCCTGA
TTACCCTCTGGCTTGGGGCCTACTGCCACCATACCAACTCCCCCGTTCCT
CTCCGACTTCTTGCTAAAACTCAGGGAAACCGCATCAGCGCTCGTTTCGA
GTACGAGTGGTACGACGAGAAGGGTCAGTGGTACCGGACGCACGGCAACG
AGCACTGGGAGTTCGACGACCTCGGGTACATGCGCTGGAGGGACATGAGC
GCGAATGACATCCCTATCGACGAGAACGAGAGGAGGCTGACGACGTAAAC
TACAGCAGAATGCGCCCGCACTTGAGAACAGCTAGTAGTTTCGGCCGAGG
CTGGGGTTGTTACCGTATTCTGAAAGGAAGAGATAATCGCACCGATGCAG
GCTAAGCTGAGAAGTACGTCGTCATGCTTGAGCGTGTTACTCTGGCTATG
GATATCGCTTTCTGCACGGTTGCGTTCAGTACGACGAAGCGAGGCGCAGA
ACTGACGAACACCTTGGTGCAACGCATCTTGCGTTTACCAAATCATAGTG
GACTCATGTTCAACTTTCAATGGGGGAAGACGCAGCGGGATGGAGCGGAC
CATATTTTGACTATTCCTTATGATGAGGTGAACGTATCGATCTGTCCAGT
ACGAGCAGTGGAAGAGTTGGTCGCGATAGCAACGTGCGTAGGCTGGGACA
TGACGAAAGGATATTTGTTTCCTTCTATCGCAAAGGAAGTCCAGCAAGGA
CAGCCCGTAGTAGAATCGAAGGCGGTCACGACACAGTACATGTCAGCTGC
GCTGAAGAGGTATGCTCAACGAGCAGGGGAGCGGCAAGATTTTTCTTTGC
ATTCGTTTCGGTCGGGAGGAGCGATTTCACGGGCATTAGCAGGGGATTCT
CTCTCATCCATCATGCAGAAAGCGTGCTGGAAAAACCCGAAGACAGCACG
GCGATACATGCGGCTGATGGAGGTCGTGGCGCCAGGTTCCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:699621..703811+

>mRNA_E-siliculosus-1a_M_contig84.16570.1 ID=mRNA_E-siliculosus-1a_M_contig84.16570.1|Name=mRNA_E-siliculosus-1a_M_contig84.16570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:699621..703811+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTCGTGCTCAACAAGCTGTGCTTCGTGCTCTCCGCCTCCTCGCGGTT
GTCAGGGAGGCGAGGCGTCGCAAAGACCGCCGCAGCAGCAGCGGCGGGAT
CCTTCTCACCAACCTGCTGCAGGATGTCGTCGTCTGATCCAGCTTCAGCG
GCGGCAGCAGCAGCCGAGTGGCCGAACCCCGCCGCGTTCAATGCCCTGTC
CCACAGCAGCCGCAGCAAGATCTACTGCGACTACGGGGACGAGGGGGGCA
TGACCTGGAAGCCCCACGAGGAGCCCCCCAAGATGCTCGTGCTCAACAAG
CTGTGCTTCGTGCTCTCCGCCTCCTCGCGGTTGTCAGGGAGGCGAGGCGT
CGCAAAGACCGCCGCAGCAGCAGCGGCGGGATCCTTCTCACCAACCTGCT
GCAGGATGTCGTCGTCTGATCCAGCTTCAGCGGCGGCAGCAGCAGCCGAG
TGGCCGAACCCCGCCGCGTTCAATGCCCTGTCCCACAGCAGCCGCAGCAA
GATCTACTGCGACTACGGGGACGAGGGGGGCATGACCTGGAAGCCCCACG
AGGAGCCCCCCAAGCACCCCCTGCCGCCGTTCACTGCGGAGACCGCTCTG
AAGAAGACCAAGGCAGCGGAGGCGGCGTGGAACACCCGGGACCCGGCGAA
GGTCGCCGCTGCTTACAGCCCGGACACGGTCTGGAGAAACAGGGACGAGA
TATTCGCAGCACCCCCTGCCGCCGTTCACTGCGGAGACCGCTCTGAAGAA
GACCAAGGCAGCGGAGGCGGCGTGGAACACCCGGGACCCGGCGAAGGTCG
CCGCTGCTTACAGCCCGGACACGGTCTGGAGAAACAGGGACGAGATATTC
GCAGGGCGGGAGGAAGTCCAGGCCTTCCTGACACGCAAGTGGAGCAAGGA
GCAGGGGTACCGCCTCAAGAAGCACCTCTGGTCGTTCGAGGGCGGGAGGA
AGTCCAGGCCTTCCTGACACGCAAGTGGAGCAAGGAGCAGGGGTACCGCC
TCAAGAAGCACCTCTGGTCGTTCGAGGGAAACCGCATCAGCGCTCGTTTC
GAGTACGAGTGGTACGACGAGAAGGGTCAGTGGTACCGGACGCACGGCAA
CGAGCACTGGGAGTTCGACGACCTCGGGTACATGCGCTGGAGGGACATGA
GCGCGAATGACATCCCTATCGACGAGAACGAGAGGAGGCTGACGACGTAA
GGAAACCGCATCAGCGCTCGTTTCGAGTACGAGTGGTACGACGAGAAGGG
TCAGTGGTACCGGACGCACGGCAACGAGCACTGGGAGTTCGACGACCTCG
GGTACATGCGCTGGAGGGACATGAGCGCGAATGACATCCCTATCGACGAG
AACGAGAGGAGGCTGACGACGTAA
back to top