mRNA_E-siliculosus-1a_M_contig84.16569.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16569.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16569.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A7K4FHF9_9ARCH (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K4FHF9_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 3.610e-6
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3
Query: 1290 RSGSSGVSCRTG----LVPGGGWDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCG 1466
            R G+ GV  R G    L P   +D+VD+DP+GS LPFL  A+GA+A GG+LAV ATD+ VL G
Sbjct:  107 RFGARGVLARAGDARELPPEAPFDYVDLDPYGSPLPFLATALGALAPGGILAVTATDMMVLAG 169          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A835Z9D7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.970e-6
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGK 1469
            +DFVDVDPFGS +PF  AA+ AV DGGV+A+AATD+ VLCG+
Sbjct:  226 FDFVDVDPFGSPMPFAAAALAAVTDGGVVALAATDMQVLCGR 267          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: T1CTA9_9ZZZZ (N(2),N(2)-dimethylguanosine tRNA methyltransferase (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1CTA9_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 4.040e-6
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKNKG 1478
            +++VD+DP+GS LPFLE AV A ADGGVLAV ATDL VL G   G
Sbjct:   86 FEYVDLDPYGSPLPFLETAVAATADGGVLAVTATDLMVLAGVQPG 130          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A098VNT6_9MICR (N2,N2-dimethylguanosine tRNA methyltransferase n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VNT6_9MICR)

HSP 1 Score: 59.7 bits (143), Expect = 6.270e-6
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKNKG 1478
            +D +DVDP+GS  PFL+AAV AV+ GG+LA+ +TD+AVLCG + G
Sbjct:  149 FDLIDVDPYGSASPFLDAAVQAVSSGGLLAITSTDMAVLCGVHPG 193          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A842MCS8_9ARCH (tRNA (Guanine(10)-N(2))-dimethyltransferase (Fragment) n=1 Tax=Candidatus Methanosuratincola sp. TaxID=2495426 RepID=A0A842MCS8_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 7.230e-6
Identity = 26/47 (55.32%), Postives = 39/47 (82.98%), Query Frame = 3
Query: 1332 PGGGWDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKN 1472
            PGG +DF+D+DPFG+ +PF++++V A+ +GG+LAV ATD A LCG +
Sbjct:  131 PGGRFDFIDIDPFGTPIPFIDSSVRALRNGGMLAVTATDTAPLCGVH 177          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: R7Q5C0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C0_CHOCR)

HSP 1 Score: 60.1 bits (144), Expect = 8.700e-6
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKN 1472
            +D VD+DP+GS  PFL+ AV AVADGG+LAV  TDLAVLCG +
Sbjct:  399 FDAVDLDPYGSAAPFLDVAVQAVADGGLLAVTCTDLAVLCGNS 441          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A7S3DYY6_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S3DYY6_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-5
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 1308 VSCRTGLVP-GGGWDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKN 1472
              CR  ++     +D VD+DP+GS  PFL++AV AV+D G+L V ATD+AVLCG N
Sbjct:  226 ADCRLAMLAHNAAFDVVDLDPYGSPAPFLDSAVQAVSDNGLLCVTATDMAVLCGNN 281          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A533W7B3_9ARCH (Methyltransferase (Fragment) n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533W7B3_9ARCH)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-5
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCG 1466
            +DFVD+DPFG+ +P+++ A GA ADGGV+++ +TD AVLCG
Sbjct:  126 FDFVDIDPFGTPVPYIQGAFGAAADGGVVSLTSTDTAVLCG 166          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A2X0P9J5_9BASI (BQ5605_C009g05805 protein n=3 Tax=Microbotryum TaxID=34416 RepID=A0A2X0P9J5_9BASI)

HSP 1 Score: 59.3 bits (142), Expect = 1.460e-5
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKN 1472
            +D VD+DP+GS +PFL+AAVGAVADGG+L +  TD+ VL G N
Sbjct:  367 FDCVDLDPYGSAVPFLDAAVGAVADGGLLCITCTDMGVLAGHN 409          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Match: A0A238FL88_9BASI (BQ2448_7569 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FL88_9BASI)

HSP 1 Score: 59.3 bits (142), Expect = 1.520e-5
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 3
Query: 1344 WDFVDVDPFGSCLPFLEAAVGAVADGGVLAVAATDLAVLCGKN 1472
            +D VD+DP+GS +PFL+AAVGAVADGG+L +  TD+ VL G N
Sbjct:  398 FDCVDLDPYGSAVPFLDAAVGAVADGGLLCITCTDMGVLAGHN 440          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K4FHF9_9ARCH3.610e-653.97Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A835Z9D7_9STRA3.970e-669.05S-adenosyl-L-methionine-dependent methyltransferas... [more]
T1CTA9_9ZZZZ4.040e-666.67N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
A0A098VNT6_9MICR6.270e-660.00N2,N2-dimethylguanosine tRNA methyltransferase n=1... [more]
A0A842MCS8_9ARCH7.230e-655.32tRNA (Guanine(10)-N(2))-dimethyltransferase (Fragm... [more]
R7Q5C0_CHOCR8.700e-667.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3DYY6_9CHLO1.290e-551.79Hypothetical protein (Fragment) n=2 Tax=Pycnococcu... [more]
A0A533W7B3_9ARCH1.310e-558.54Methyltransferase (Fragment) n=1 Tax=Thaumarchaeot... [more]
A0A2X0P9J5_9BASI1.460e-562.79BQ5605_C009g05805 protein n=3 Tax=Microbotryum Tax... [more]
A0A238FL88_9BASI1.520e-562.79BQ2448_7569 protein n=1 Tax=Microbotryum intermedi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:695644..699457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1308
Model size1614
Exons5
Ec32 orthologEc-15_001050.1
Ec32 ortholog descriptiontRNA methyltransferase, Trm1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936294.8912523-UTR-E-siliculosus-1a_M_contig84:695643..6957611622936294.8912523-UTR-E-siliculosus-1a_M_contig84:695643..695761Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 695644..695761 -
1696251012.652507-UTR-E-siliculosus-1a_M_contig84:695643..6957611696251012.652507-UTR-E-siliculosus-1a_M_contig84:695643..695761Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 695644..695761 -
1622936294.9877954-UTR-E-siliculosus-1a_M_contig84:699269..6994571622936294.9877954-UTR-E-siliculosus-1a_M_contig84:699269..699457Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 699270..699457 -
1696251012.728335-UTR-E-siliculosus-1a_M_contig84:699269..6994571696251012.728335-UTR-E-siliculosus-1a_M_contig84:699269..699457Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 699270..699457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936294.9090998-CDS-E-siliculosus-1a_M_contig84:695761..6964921622936294.9090998-CDS-E-siliculosus-1a_M_contig84:695761..696492Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 695762..696492 -
1696251012.6621635-CDS-E-siliculosus-1a_M_contig84:695761..6964921696251012.6621635-CDS-E-siliculosus-1a_M_contig84:695761..696492Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 695762..696492 -
1622936294.9296312-CDS-E-siliculosus-1a_M_contig84:697330..6974311622936294.9296312-CDS-E-siliculosus-1a_M_contig84:697330..697431Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 697331..697431 -
1696251012.6724162-CDS-E-siliculosus-1a_M_contig84:697330..6974311696251012.6724162-CDS-E-siliculosus-1a_M_contig84:697330..697431Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 697331..697431 -
1622936294.9452615-CDS-E-siliculosus-1a_M_contig84:697963..6983521622936294.9452615-CDS-E-siliculosus-1a_M_contig84:697963..698352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 697964..698352 -
1696251012.6910121-CDS-E-siliculosus-1a_M_contig84:697963..6983521696251012.6910121-CDS-E-siliculosus-1a_M_contig84:697963..698352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 697964..698352 -
1622936294.9599771-CDS-E-siliculosus-1a_M_contig84:698807..6988571622936294.9599771-CDS-E-siliculosus-1a_M_contig84:698807..698857Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 698808..698857 -
1696251012.705346-CDS-E-siliculosus-1a_M_contig84:698807..6988571696251012.705346-CDS-E-siliculosus-1a_M_contig84:698807..698857Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 698808..698857 -
1622936294.97178-CDS-E-siliculosus-1a_M_contig84:699232..6992691622936294.97178-CDS-E-siliculosus-1a_M_contig84:699232..699269Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 699233..699269 -
1696251012.71715-CDS-E-siliculosus-1a_M_contig84:699232..6992691696251012.71715-CDS-E-siliculosus-1a_M_contig84:699232..699269Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 699233..699269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16569.1prot_E-siliculosus-1a_M_contig84.16569.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 695762..699269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16569.1

>prot_E-siliculosus-1a_M_contig84.16569.1 ID=prot_E-siliculosus-1a_M_contig84.16569.1|Name=mRNA_E-siliculosus-1a_M_contig84.16569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=436bp
MANGKEEKVIAEGRALLSVTPGVFYSDHQVLQRDLSVAVLRAYRQFALEG
SLRPAPKRRHPSSAATAANNNSTNHSNNNDDHYDHNDNNNNNNKDDENGG
VARIGGLHVGRHGYRDEAPRGGGGGKEEVNGGEAEAEDFGGGGASPPERG
AATRVLRLCDLLAGGGVRAIRYSLEAGPVEVLANDHSEEACEAIRRSALL
SGISTVDVVTHGATPPGVSPLSSDEKKLFDTATPVTVAAAAAEEGEQQKS
STDKDLEASADDELGTPEKRRRQRRLASIGARSEAASVVPPTLAPSSFAV
RMGDANDLLLSGVTAPASGAPAFPTEPTQAGTVAAAAATAVAAGDERDSG
SGGSGGGGGGGDSGSRSRSGSSGVSCRTGLVPGGGWDFVDVDPFGSCLPF
LEAAVGAVADGGVLAVAATDLAVLCGKNKGGGRKV*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig84:695644..699457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16569.1 ID=mRNA_E-siliculosus-1a_M_contig84.16569.1|Name=mRNA_E-siliculosus-1a_M_contig84.16569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3814bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:695644..699457- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCTCAAAACAGCCGGGACTATTGTCCTCCTGTTGGGTGTTGCAACAGGC GTGGCTGGCGGGCTGGCAGACCGCCGGGCTGTGAGTTGATTATACACCGA GAGGAGCCTTGCTCCGTCACGAATCACGAAGTCAAAACCCGACTGGTTGC ACCGCATTTTCATCAGTTCAGCGCTCACGCCGCGTATCATGGCCAACGGC AAGGAGGAGAAGGTCATTGCAGAAGGTACGTCGAGAGAAGATGAACTCTC ACGCTCACTGCCAATAAATTGAACGAGTAATGGCGTTGGGGTGCTACAGG TACATACTGGTAAATTTACAACGAGTTTGCTTAGTTAGGTGGCGTGTATA CTGCGGTAGTCAAGATTGCAGCTCTACCTTTTCGTGTTCTAACACGATGT TGCTAGGATTGCAGTCCACGCTGTCTGAAGAAAGGCCCGCGTGCTCCAGT CGACGAGCTGTGCACTTTCAGCGACACCTTTGCGACTCCACGTCTCTCGT CGTCGTGTGTTGGTGTTAAATCGCCGTTCGTATGGGGATGAGTGCTCCGT TCGATGGCGACTACACCTCTCCCTGCATGTCGCCATCCGTGTGCATGCAG GTCGAGCTCTGCTCTCCGTCACTCCGGGGGTGTTTTACAGCGACCATCAG GTGCGGCAACCTCGGCAACTGCTGTTTTTTGTCACATGCGTATGGCACCT TGATCGTCATGAGGCTCGATGTGTCGCGTGCGCCCCATTTGCCGGTACCT CAAGAGCTTCCGTCGTACCGTGCGCCCGTGAGCCATGTTGCACCAGTCTA CTTTAGCATGGCAGAACTTATCCTGCTTGAGAAAACAAACCAAATCCATT TCGTATGTTCAGTGTGATTTCGACGATGAAGGGACTGCTGCCGGCGTATC GAGGAAGCAGCGTTTGGCACAACAACCGATAGCGACATGCGTACTGTTTG CGGTAGGACTACAATGTAGGGGAACGTGCCGTGGTCACCACGCCGATCGG TTCAAACTTTCAAACGACGGACACACGTAGACCGCAGTCAGTCGAGCCCA TGGACCGCCTCCCCGAACCGCCTCCGAATTGCTCCGAATTGTTCCGGGAG AGAAGGTTCTCCAGCGAGATCTATCGGTGGCGGTCCTCCGAGCCTACCGC CAGTTTGCGCTCGAGGGCTCCCTCCGCCCCGCCCCCAAGCGGCGGCATCC GTCATCCGCCGCCACTGCCGCCAACAACAACAGCACCAACCATAGCAATA ACAACGACGACCACTACGACCACAACGATAACAACAACAACAACAACAAG GACGACGAAAATGGAGGAGTTGCGCGGATCGGGGGGTTGCATGTTGGTCG ACATGGGTACCGGGATGAGGCCCCGCGGGGGGGTGGGGGGGGCAAGGAAG AAGTGAACGGCGGCGAGGCCGAGGCCGAAGACTTCGGAGGGGGGGGAGCG AGCCCGCCAGAGCGCGGAGCAGCAACGCGCGTCCTTCGATTGTGGTGCGT CGAGCTTTCGTGTTGCGCTTGTGCTCTGGCAAACGATGGGGTGTGTTCTG AATCTCCATGTCCTGTCCCCTGCACACGTTCTTTCATTGGCGAGCTTTCG CGCTGCTTCGGTGAACGAAGGATTTGTGTGCATTCACAACGTCGGTAGCG AGCTTTCGTGTTCCTCTCCGTTGGTAGACAATGAATATTCACCGGACACG CCATAGGTTGGTGATTGCCGTATCACCGCACCCGACGTAGAGAGCAGCTC TTAGTCGTGACTGGTACGTACGCTCTGCACACTTTGGGATATACAATTCG GCCTCCTGCTGCTGCGTTGCAGCCTGAGAAAAAGCAGTGCGATGCCGCTT TTCCCCGAAGGATTATCGTGCCATCAACACCCTCTTGCCGCGCTGGGACC GCTCACTCGTGTCTGGCAAGAAGACGCTTCGGACAAGTCTCCTAACCCTC AGCCTTACCCCTACAGGAACTGACACTAACACTTTGCCCAAACCCCTGCT GGTCGTGCCCCCGTTTTGGTCGACAGCGATTTGCTGGCGGGAGGAGGTGT CCGCGCCATCCGGTACTCTCTAGAAGCCGGCCCCGTTGAAGTGTTGGCCA ACGACCATTCCGAGGAGGCTTGTGAAGGTACAACCAGTCGCTTCGTGGCC CGGAGAGTTCGGGAATCTCGCTGGCTGTTTTTGTCTCTCTCTCTCTCTCT GTCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCCCCCTACCTCTCTCTTGTTGATAGTTTTT GTTGATCGACATTTTAGAAGGGTGTCCCGGAGCAGCGGGCTGATTGCACA TTTTTTTTTGTCGGGGAGAGGAGCGGCTCCTGTTGATTTTGTTTGCCTCG TAGGCTGGGGCTACAGTAGCTCGCTGTGCTGGTCGTCAGACCGGGCTTCG CGTTAATTTCAACACCCGAAACGGTCACGTAGTAGGTAGCACCGTAGGTG TGTGCGGACGGCAGTGGATTGCCGTGATTGGACACGTGGGTAGATCTGAT GTCGGAGAAGTTATCGGGGTATCGGGGTCGCCCATTCAAGCATGCTTCTG TCCAACCAGAGCTTGACTCTTTTTGTTGTTTTTTGTTTGCTGCGCCTTTT GGAGCTTGTTGCTTTTTGGCGGAGGAGGAAGACCAAGAACACACGCGCTC GACGACAACTACCAACACCTGACGACGACGCTGTTCCCTATGTACACTCT CGCTCACGCACATGTCAACTGGGGTGGGAAGCTGTTCGACGCTGTTACCT ATGTACATTCTTACTAAACTCGCCTTATATCGATCGTCAACTATCAACTT TGAGCTTATTCTCAATTCAACCGAACACAGCTAACTTGTTCTCAAACCGC GCACTTCTGCCGCCGCTGCCACTGCCGCTGCTGCTGGCGCCGGTGCGCGC CGGTGTGCGTTGCAGCCATACGTCGCAGCGCCCTCCTGAGCGGCATAAGC ACTGTCGACGTGGTCACGCACGGGGCAACCCCGCCAGGAGTGTCCCCTCT CTCATCCGACGAAAAAAAACTTTTTGACACAGCAACGCCCGTCACAGTAG CGGCGGCGGCGGCGGAGGAGGGTGAGCAGCAGAAGTCGTCTACTGACAAG GATCTTGAAGCGTCTGCTGACGACGAGCTTGGAACACCGGAGAAACGGCG ACGGCAGCGGCGGCTTGCTTCGATCGGGGCACGGTCGGAAGCAGCGTCGG TTGTACCGCCGACCCTTGCCCCCTCTTCTTTCGCCGTGCGCATGGGGGAC GCGAACGATCTCCTGCTGTCCGGTGTCACCGCTCCGGCTTCCGGCGCACC CGCGTTTCCGACGGAACCGACGCAGGCTGGAACGGTGGCCGCGGCGGCGG CGACGGCGGTGGCTGCAGGAGACGAGAGGGACAGCGGCAGCGGTGGCAGC GGCGGCGGCGGCGGGGGCGGCGATAGCGGCAGCCGCAGCCGCAGCGGTAG CAGCGGCGTCAGCTGTCGCACGGGGCTAGTCCCCGGCGGTGGTTGGGACT TCGTCGACGTGGACCCCTTCGGCAGCTGCTTACCGTTTCTCGAGGCGGCC GTGGGGGCCGTGGCTGACGGGGGCGTGTTGGCGGTTGCGGCGACCGACTT AGCGGTGCTCTGCGGGAAGAACAAGGGCGGAGGACGCAAGGTTTGACCTG GATGGATATTTGATTTTTTTGCTTTGTACAATTGACCCCCGATTAAAGTC GCTTGGGACACGTCGACTCCCCGCTTTAAAGAAGACGAAATGTTTTAGAG AACCATGGGGCCCA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:695644..699457-

>mRNA_E-siliculosus-1a_M_contig84.16569.1 ID=mRNA_E-siliculosus-1a_M_contig84.16569.1|Name=mRNA_E-siliculosus-1a_M_contig84.16569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2616bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:695644..699457- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCAACGGCAAGGAGGAGAAGGTCATTGCAGAAGATGGCCAACGGCA
AGGAGGAGAAGGTCATTGCAGAAGGTCGAGCTCTGCTCTCCGTCACTCCG
GGGGTGTTTTACAGCGACCATCAGGTCGAGCTCTGCTCTCCGTCACTCCG
GGGGTGTTTTACAGCGACCATCAGGTTCTCCAGCGAGATCTATCGGTGGC
GGTCCTCCGAGCCTACCGCCAGTTTGCGCTCGAGGGCTCCCTCCGCCCCG
CCCCCAAGCGGCGGCATCCGTCATCCGCCGCCACTGCCGCCAACAACAAC
AGCACCAACCATAGCAATAACAACGACGACCACTACGACCACAACGATAA
CAACAACAACAACAACAAGGACGACGAAAATGGAGGAGTTGCGCGGATCG
GGGGGTTGCATGTTGGTCGACATGGGTACCGGGATGAGGCCCCGCGGGGG
GGTGGGGGGGGCAAGGAAGAAGTGAACGGCGGCGAGGCCGAGGCCGAAGA
CTTCGGAGGGGGGGGAGCGAGCCCGCCAGAGCGCGGAGCAGCAACGCGCG
TCCTTCGATTGTGGTTCTCCAGCGAGATCTATCGGTGGCGGTCCTCCGAG
CCTACCGCCAGTTTGCGCTCGAGGGCTCCCTCCGCCCCGCCCCCAAGCGG
CGGCATCCGTCATCCGCCGCCACTGCCGCCAACAACAACAGCACCAACCA
TAGCAATAACAACGACGACCACTACGACCACAACGATAACAACAACAACA
ACAACAAGGACGACGAAAATGGAGGAGTTGCGCGGATCGGGGGGTTGCAT
GTTGGTCGACATGGGTACCGGGATGAGGCCCCGCGGGGGGGTGGGGGGGG
CAAGGAAGAAGTGAACGGCGGCGAGGCCGAGGCCGAAGACTTCGGAGGGG
GGGGAGCGAGCCCGCCAGAGCGCGGAGCAGCAACGCGCGTCCTTCGATTG
TGCGATTTGCTGGCGGGAGGAGGTGTCCGCGCCATCCGGTACTCTCTAGA
AGCCGGCCCCGTTGAAGTGTTGGCCAACGACCATTCCGAGGAGGCTTGTG
AAGCGATTTGCTGGCGGGAGGAGGTGTCCGCGCCATCCGGTACTCTCTAG
AAGCCGGCCCCGTTGAAGTGTTGGCCAACGACCATTCCGAGGAGGCTTGT
GAAGCCATACGTCGCAGCGCCCTCCTGAGCGGCATAAGCACTGTCGACGT
GGTCACGCACGGGGCAACCCCGCCAGGAGTGTCCCCTCTCTCATCCGACG
AAAAAAAACTTTTTGACACAGCAACGCCCGTCACAGTAGCGGCGGCGGCG
GCGGAGGAGGGTGAGCAGCAGAAGTCGTCTACTGACAAGGATCTTGAAGC
GTCTGCTGACGACGAGCTTGGAACACCGGAGAAACGGCGACGGCAGCGGC
GGCTTGCTTCGATCGGGGCACGGTCGGAAGCAGCGTCGGTTGTACCGCCG
ACCCTTGCCCCCTCTTCTTTCGCCGTGCGCATGGGGGACGCGAACGATCT
CCTGCTGTCCGGTGTCACCGCTCCGGCTTCCGGCGCACCCGCGTTTCCGA
CGGAACCGACGCAGGCTGGAACGGTGGCCGCGGCGGCGGCGACGGCGGTG
GCTGCAGGAGACGAGAGGGACAGCGGCAGCGGTGGCAGCGGCGGCGGCGG
CGGGGGCGGCGATAGCGGCAGCCGCAGCCGCAGCGGTAGCAGCGGCGTCA
GCTGTCGCACGGGGCTAGTCCCCGGCGGTGGTTGGGACTTCGTCGACGTG
GACCCCTTCGGCAGCTGCTTACCGTTTCTCGAGGCGGCCGTGGGGGCCGT
GGCTGACGGGGGCGTGTTGGCGGTTGCGGCGACCGACTTAGCGGTGCTCT
GCGGGAAGAACAAGGGCGGAGGACGCAAGGTTTGACCATACGTCGCAGCG
CCCTCCTGAGCGGCATAAGCACTGTCGACGTGGTCACGCACGGGGCAACC
CCGCCAGGAGTGTCCCCTCTCTCATCCGACGAAAAAAAACTTTTTGACAC
AGCAACGCCCGTCACAGTAGCGGCGGCGGCGGCGGAGGAGGGTGAGCAGC
AGAAGTCGTCTACTGACAAGGATCTTGAAGCGTCTGCTGACGACGAGCTT
GGAACACCGGAGAAACGGCGACGGCAGCGGCGGCTTGCTTCGATCGGGGC
ACGGTCGGAAGCAGCGTCGGTTGTACCGCCGACCCTTGCCCCCTCTTCTT
TCGCCGTGCGCATGGGGGACGCGAACGATCTCCTGCTGTCCGGTGTCACC
GCTCCGGCTTCCGGCGCACCCGCGTTTCCGACGGAACCGACGCAGGCTGG
AACGGTGGCCGCGGCGGCGGCGACGGCGGTGGCTGCAGGAGACGAGAGGG
ACAGCGGCAGCGGTGGCAGCGGCGGCGGCGGCGGGGGCGGCGATAGCGGC
AGCCGCAGCCGCAGCGGTAGCAGCGGCGTCAGCTGTCGCACGGGGCTAGT
CCCCGGCGGTGGTTGGGACTTCGTCGACGTGGACCCCTTCGGCAGCTGCT
TACCGTTTCTCGAGGCGGCCGTGGGGGCCGTGGCTGACGGGGGCGTGTTG
GCGGTTGCGGCGACCGACTTAGCGGTGCTCTGCGGGAAGAACAAGGGCGG
AGGACGCAAGGTTTGA
back to top