mRNA_E-siliculosus-1a_M_contig84.16568.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16568.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16568.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:694944..695616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size486
Model size675
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936282.1647575-UTR-E-siliculosus-1a_M_contig84:694943..6951301622936282.1647575-UTR-E-siliculosus-1a_M_contig84:694943..695130Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 694944..695130 +
1696251006.8848026-UTR-E-siliculosus-1a_M_contig84:694943..6951301696251006.8848026-UTR-E-siliculosus-1a_M_contig84:694943..695130Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 694944..695130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936282.193202-CDS-E-siliculosus-1a_M_contig84:695130..6956161622936282.193202-CDS-E-siliculosus-1a_M_contig84:695130..695616Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 695131..695616 +
1696251006.8959744-CDS-E-siliculosus-1a_M_contig84:695130..6956161696251006.8959744-CDS-E-siliculosus-1a_M_contig84:695130..695616Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 695131..695616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16568.1prot_E-siliculosus-1a_M_contig84.16568.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 695131..695616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16568.1

>prot_E-siliculosus-1a_M_contig84.16568.1 ID=prot_E-siliculosus-1a_M_contig84.16568.1|Name=mRNA_E-siliculosus-1a_M_contig84.16568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=162bp
MWFESLEHAQGTCRCDITKTWCKKTYIVHSSRLDESVSPAEALRADQQTF
LQGRVLIALLALCSQTYTIVSVRMFSSLARHRRSHPHIVRCTLHILTTAP
PKQLSFRGPSGRKTRTHKVSKQQQSSAYITSQIWCAEKIVVLVVKTHMGS
KTTRGSVSHASP
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mRNA from alignment at E-siliculosus-1a_M_contig84:694944..695616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16568.1 ID=mRNA_E-siliculosus-1a_M_contig84.16568.1|Name=mRNA_E-siliculosus-1a_M_contig84.16568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=673bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:694944..695616+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAACCGTCTCGTGGAGAGCTTTCCAAAAGCGTACCAGTTGATTTCGGCAT
CCTCTTCGTAGTGGAGAAGTCGATCTTTGAAAATCGGTCCAGGGGGTGTG
ATATCTTATGCAATATGCAGTATCCATGAAGCTCGTAACATTCGTCGCTA
CTCTGATAAGAGTTTCCTACGAATCGGCAAACAAGAGATGTGGTTTGAAT
CGCTTGAACACGCCCAGGGTACATGTAGGTGTGACATCACGAAGACCTGG
TGCAAGAAGACATATATTGTACACTCTTCACGCCTAGACGAGTCGGTTTC
GCCGGCAGAAGCGTTGCGCGCTGACCAGCAGACCTTCTTGCAAGGTCGGG
TGTTGATAGCCTTGCTTGCACTGTGCTCGCAGACGTACACCATCGTTTCC
GTTCGGATGTTCTCATCATTAGCCCGGCACCGAAGATCTCATCCACACAT
CGTCCGTTGCACTCTTCATATTTTGACGACTGCACCACCAAAGCAACTAT
CCTTTCGCGGTCCGTCGGGAAGAAAAACGCGGACGCACAAAGTCTCCAAA
CAGCAGCAATCCAGCGCATACATCACCTCACAAATCTGGTGCGCGGAAAA
AATAGTCGTCCTCGTTGTAAAGACGCACATGGGGTCTAAAACGACGCGGG
GAAGCGTCTCTCATGCCTCCCCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:694944..695616+

>mRNA_E-siliculosus-1a_M_contig84.16568.1 ID=mRNA_E-siliculosus-1a_M_contig84.16568.1|Name=mRNA_E-siliculosus-1a_M_contig84.16568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:694944..695616+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGTTTGAATCGCTTGAACACGCCCAGGGTACATGTAGGTGTGACAT
CACGAAGACCTGGTGCAAGAAGACATATATTGTACACTCTTCACGCCTAG
ACGAGTCGGTTTCGCCGGCAGAAGCGTTGCGCGCTGACCAGCAGACCTTC
TTGCAAGGTCGGGTGTTGATAGCCTTGCTTGCACTGTGCTCGCAGACGTA
CACCATCGTTTCCGTTCGGATGTTCTCATCATTAGCCCGGCACCGAAGAT
CTCATCCACACATCGTCCGTTGCACTCTTCATATTTTGACGACTGCACCA
CCAAAGCAACTATCCTTTCGCGGTCCGTCGGGAAGAAAAACGCGGACGCA
CAAAGTCTCCAAACAGCAGCAATCCAGCGCATACATCACCTCACAAATCT
GGTGCGCGGAAAAAATAGTCGTCCTCGTTGTAAAGACGCACATGGGGTCT
AAAACGACGCGGGGAAGCGTCTCTCATGCCTCCCCAATGTGGTTTGAATC
GCTTGAACACGCCCAGGGTACATGTAGGTGTGACATCACGAAGACCTGGT
GCAAGAAGACATATATTGTACACTCTTCACGCCTAGACGAGTCGGTTTCG
CCGGCAGAAGCGTTGCGCGCTGACCAGCAGACCTTCTTGCAAGGTCGGGT
GTTGATAGCCTTGCTTGCACTGTGCTCGCAGACGTACACCATCGTTTCCG
TTCGGATGTTCTCATCATTAGCCCGGCACCGAAGATCTCATCCACACATC
GTCCGTTGCACTCTTCATATTTTGACGACTGCACCACCAAAGCAACTATC
CTTTCGCGGTCCGTCGGGAAGAAAAACGCGGACGCACAAAGTCTCCAAAC
AGCAGCAATCCAGCGCATACATCACCTCACAAATCTGGTGCGCGGAAAAA
ATAGTCGTCCTCGTTGTAAAGACGCACATGGGGTCTAAAACGACGCGGGG
AAGCGTCTCTCATGCCTCCCCA
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