mRNA_E-siliculosus-1a_M_contig84.16562.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16562.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16562.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: D7FWZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ5_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.990e-116
Identity = 194/212 (91.51%), Postives = 197/212 (92.92%), Query Frame = 2 
Query:   56 MGVWYVFRLGVLAAAAAASAVASPAEAFITSFGGGGSKMLRVGQRHQPSFRSSSSCSRQRRADLGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKKWSATDKAYATKPTTAXXXXXXXXXXXXXXXXXXXXQQKLNPDDVGKKKGMFGL 691
            MGVWY FR GVL AAAAA AVASPAEAFITSFGGGGSKMLRVGQRHQPSF+SS SCSRQRRADL MKYVPDGLSPEQW+KMQ EEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKKWSATDKAYA KP   XXXXXXXXXXXXXXXXX    QKLNPDDVGKKKG+FGL
Sbjct:    1 MGVWYAFRSGVLVAAAAA-AVASPAEAFITSFGGGGSKMLRVGQRHQPSFKSSGSCSRQRRADLDMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKKWSATDKAYAAKPXXXXXXXXXXXXXXXXXXXXAQKAQKLNPDDVGKKKGIFGL 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: D7G4S4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S4_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.810e-35
Identity = 77/140 (55.00%), Postives = 88/140 (62.86%), Query Frame = 2 
Query:  206 RSSSSCSRQRRADLGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKN----------------------LQKKWSATDKAYA 559
            RSSSS      A L M Y+PDGLSP +W+K++  +   KKK  +LG++G   FKSRS QAWQE GAGHLFPVDPKKVKSGEIP +K PYMQR GAWDNSDL  K                        QK WS+TDKAYA
Sbjct:   34 RSSSS------AALKMVYIPDGLSPAEWKKIKDAD---KKKQENLGKLGPSRFKSRSFQAWQESGAGHLFPVDPKKVKSGEIPMDKVPYMQRGGAWDNSDLTSKKGQAAMRARKDKVVLNNKVSKGVKQKAWSSTDKAYA 164
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A836CGF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.560e-32
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 2 
Query:  197 PSFRSSSSCSRQRRADLGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNL---QKKWSATDKAYAT 562
            PS    ++ +R   + L M Y+PDGL+PEQW+ ++ +E EK  K  +LG+VG  SFKSRS QAWQE       GHLFPVDP KVK GEIP  K PYMQR G+WD+ DL KK     +K+WS  DKAYAT
Sbjct:   22 PSAALPAALARPATSSLSMAYIPDGLTPEQWKVIKEKEQEKASK--NLGRVGATSFKSRSFQAWQEAMERGEGGHLFPVDPVKVKRGEIPLSKVPYMQRGGSWDDEDLVKKEKGIKKKEWSPLDKAYAT 148
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A7S2US33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US33_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.440e-31
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 2 
Query:  245 LGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQK---KWSATDKAYA 559
            L M YVP+GL+PEQW+K+Q    EK K  G+LG++G K FKSRS  AWQ  G  HLFPVDPKKVK+GEI  +  PYMQR GAWDNSDL KK  +    +WS  DK YA
Sbjct:   38 LRMGYVPEGLTPEQWKKIQ----EKDKAKGNLGEMGPKRFKSRSFAAWQAAGGKHLFPVDPKKVKTGEIAMKDVPYMQRGGAWDNSDLIKKGEKAPKVEWSDRDKQYA 141
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A835ZE56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE56_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.750e-27
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:  251 MKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQ---EDG-AGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKN--LQKK-WSATDKAYA 559
            M+Y+PDGL+  QW  ++ +E  K  K  +LG+VG  SFKSRS QAWQ   E+G  GHLFPVDP+KVK+GEI   + PYMQR+G+WD+ DL KK   +QKK W+ TDKAYA
Sbjct:   42 MRYIPDGLTQAQWDAIKEKEQAKASK--NLGRVGATSFKSRSFQAWQQAMENGEGGHLFPVDPRKVKTGEIKLSEVPYMQRRGSWDDEDLLKKEKGIQKKAWTPTDKAYA 149
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A6S9GSP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GSP2_HETAK)

HSP 1 Score: 108 bits (271), Expect = 1.540e-25
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 2 
Query:  257 YVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDL-AKKNLQKK 532
            YVPDGLS EQ+ K++ EEAEK K   +LG+VG   FKSRS   W   G  HLFPVDP+KVKSGEI  E  PYMQRKGAWDNSDL   KN++ K
Sbjct:   42 YVPDGLSAEQYAKIKKEEAEKLK---NLGKVGPNRFKSRSFADWHAAGGKHLFPVDPRKVKSGEIAIEDVPYMQRKGAWDNSDLKGNKNVRDK 131
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A7R9UCL3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.310e-21
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 2 
Query:  224 SRQRRADLGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKG-AWDNSDLAKKNL 523
            SR  R  L M YVPDG+SPEQW+KMQ +E  K K   +LG  G+  F+SRSLQAWQE GA HLFP DP   K  E+P     YM R+G +WD +D+  K +
Sbjct:   58 SRGTRFQLSMGYVPDGMSPEQWKKMQAKEKSKSKGK-NLGATGITKFQSRSLQAWQEAGAKHLFPTDPTNKKKEELP-----YMMRRGGSWDGADIKGKGV 152
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A7S2GQL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQL4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.340e-20
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2 
Query:  236 RADLGMKYVPDGLSPEQWRKMQT-EEAEKKKKMGDLGQVGVKSFKSRSLQAWQ---EDG-AGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKKW 535
            R  + M YVPDG+S +QW  M+  EEA K KK  + G  G K F+SRS+ ++Q   E G A HL PVDP KV+ GEIP +  PYMQR G+WDN+D+A K  +K W
Sbjct:   39 RTQVSMGYVPDGMSQKQWDAMKKKEEALKAKK--NFGATGAKGFRSRSMASFQAALERGEAAHLMPVDPAKVRRGEIPLKDVPYMQRGGSWDNTDIAGKQSKKGW 141
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: B7GDH0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDH0_PHATC)

HSP 1 Score: 92.0 bits (227), Expect = 1.330e-19
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:  251 MKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQED----GAGHLFPV--DPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKK-WSATDKAY 556
            M YVPDG+SPE++RK++ +E +K K     G  G ++FKSRS+QA+Q+D      GHL PV    +K+KSG+I  E  PYMQR GAWDNSD+  +N +KK W  +DK Y
Sbjct:   31 MGYVPDGMSPEEYRKLRQKEQDKVKNKR-FGAFGPQTFKSRSMQAFQKDLEEGKGGHLMPVFNAKEKLKSGKIKKEDIPYMQRLGAWDNSDV--QNAKKKQWRGSDKKY 136
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Match: A0A6U3BRN0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BRN0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.230e-19
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 2 
Query:  257 YVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLFPV--DPKKVKSGEIPPEKTPYMQRKGAWDNSDLAKKNLQKKWSATDKAYA 559
            YVPDG +PE ++K +  EA+K +K  +LG++G K FKSRS Q++QE      A HL PV    ++VK GE+  E  PYMQR G+WDNSD+     +K+W ++DK YA
Sbjct:   37 YVPDGFTPESYKKFKEAEAKKLQKQ-NLGKLGPKGFKSRSFQSFQEALERGEADHLMPVFNAKERVKKGELRTEDIPYMQRGGSWDNSDVKNAKNKKRWLSSDKEYA 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ5_ECTSI1.990e-11691.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G4S4_ECTSI1.810e-3555.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGF0_9STRA1.560e-3254.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2US33_9STRA3.440e-3160.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZE56_9STRA1.750e-2757.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9GSP2_HETAK1.540e-2563.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCL3_9STRA2.310e-2152.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2GQL4_9STRA2.340e-2051.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B7GDH0_PHATC1.330e-1950.46Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6U3BRN0_9STRA2.230e-1947.66Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:628080..634660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size642
Model size697
Exons4
Ec32 orthologEc-15_001160.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D1KJ@1,2S4WB@2759
Seed eggNOG ortholog2880.D7FWZ5
Seed ortholog evalue1.1e-91
Seed ortholog score342.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16562.1prot_E-siliculosus-1a_M_contig84.16562.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 628135..634660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936293.2191703-UTR-E-siliculosus-1a_M_contig84:628079..6281341622936293.2191703-UTR-E-siliculosus-1a_M_contig84:628079..628134Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 628080..628134 +
1696251012.1013505-UTR-E-siliculosus-1a_M_contig84:628079..6281341696251012.1013505-UTR-E-siliculosus-1a_M_contig84:628079..628134Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 628080..628134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936293.231001-CDS-E-siliculosus-1a_M_contig84:628134..6284251622936293.231001-CDS-E-siliculosus-1a_M_contig84:628134..628425Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 628135..628425 +
1696251012.1131067-CDS-E-siliculosus-1a_M_contig84:628134..6284251696251012.1131067-CDS-E-siliculosus-1a_M_contig84:628134..628425Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 628135..628425 +
1622936293.2456934-CDS-E-siliculosus-1a_M_contig84:629575..6296621622936293.2456934-CDS-E-siliculosus-1a_M_contig84:629575..629662Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 629576..629662 +
1696251012.1252291-CDS-E-siliculosus-1a_M_contig84:629575..6296621696251012.1252291-CDS-E-siliculosus-1a_M_contig84:629575..629662Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 629576..629662 +
1622936293.2579548-CDS-E-siliculosus-1a_M_contig84:633688..6338171622936293.2579548-CDS-E-siliculosus-1a_M_contig84:633688..633817Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 633689..633817 +
1696251012.138619-CDS-E-siliculosus-1a_M_contig84:633688..6338171696251012.138619-CDS-E-siliculosus-1a_M_contig84:633688..633817Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 633689..633817 +
1622936293.2685158-CDS-E-siliculosus-1a_M_contig84:634525..6346601622936293.2685158-CDS-E-siliculosus-1a_M_contig84:634525..634660Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 634526..634660 +
1696251012.149876-CDS-E-siliculosus-1a_M_contig84:634525..6346601696251012.149876-CDS-E-siliculosus-1a_M_contig84:634525..634660Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 634526..634660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16562.1

>prot_E-siliculosus-1a_M_contig84.16562.1 ID=prot_E-siliculosus-1a_M_contig84.16562.1|Name=mRNA_E-siliculosus-1a_M_contig84.16562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=214bp
MGVWYVFRLGVLAAAAAASAVASPAEAFITSFGGGGSKMLRVGQRHQPSF
RSSSSCSRQRRADLGMKYVPDGLSPEQWRKMQTEEAEKKKKMGDLGQVGV
KSFKSRSLQAWQEDGAGHLFPVDPKKVKSGEIPPEKTPYMQRKGAWDNSD
LAKKNLQKKWSATDKAYATKPTTAAEKKAAAAKKAADDKKKAQKQQKLNP
DDVGKKKGMFGLW*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig84:628080..634660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16562.1 ID=mRNA_E-siliculosus-1a_M_contig84.16562.1|Name=mRNA_E-siliculosus-1a_M_contig84.16562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6581bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:628080..634660+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAATCAAACACTTGATATATTCATCAAAAGGTGTGCGGAGCGGCAACAA
CAGCGATGGGTGTCTGGTACGTGTTCCGGCTAGGGGTGCTGGCGGCAGCA
GCAGCTGCCTCTGCTGTTGCTTCTCCTGCCGAAGCCTTCATTACTTCGTT
CGGAGGAGGAGGATCGAAGATGCTGCGTGTCGGGCAACGACACCAGCCTT
CGTTTAGAAGCAGCAGCAGCTGCTCCAGGCAGCGTCGCGCCGACCTCGGC
ATGAAGTACGTCCCTGACGGCCTTTCCCCGGAGCAGTGGAGGAAGATGCA
GACGGAGGAGGCTGAGAAGAAGAAAAAGATGGGCGACCTTGGGCAGGTAA
AAGGACAGGATGGCCAGGTTCTGCCATCGTCTTGTACATGAAGCACAGCA
CTACTGCTGTAGTACTCTGCAGTGTTTCTCGATCTTCATCCTTTCATCAC
GACGGGAAACTATCAAACCAAATACCGTCTCGTGCTCTTTCGAGTTCTCT
TACAGAGTGCAGCAGTATCATCAGTGTTGAAAAATAGTAAAACGTAGTGC
TTCGCGGACCTGACTCAGAAGTACTGCACTTCTTCGGAAAAAAAATACGG
AGCAACAGACTACCCGTTGACATGTAGCCATATAGGTGTGTCTACTGTCT
CCGGGTACTGAAGAAGAGCTTCCAAAGAGGATGGTGGACCTCCCGCGCAC
GTTCCCCCGTTGCTATCATACACTTGTAGTTTGCAAAACACGCTTCCTTC
GACACTTCTGGGTGCCTAGCCTCATCCCTCTTTGCGGCTGTGGTCGGAGT
CGAGGGCTTCAATGGGCACACGGGCGACTCTGCCCGCCAAGCGCACGCCG
CACACGGAGAGAATTTCAGTCACGAGTGGCCAAATACGTTACCGACAACT
AGCCGTTTGATGTCAATAAACTTACTTTCTGCAATGGCACGTGACGATGT
CAACACACTGCGCACGGCACCTACCTGGAGACGTGGGATCCCAGTACTCT
TATGCCAGTACCTCGAAGTTCCTGGGTCATTTCTTTGCCGTCGGACCGCC
TACGTAGCATATTAAGAGTATCTAGAGACAGAATAGGGAGGGGGCACGCA
GACCCTATCCCTAACGTAACACTAACCAAGCACGGATTGAACACTTTATC
CCATATGTTTGCTTGATTAATTTTGCTGCGTACTGTTGCCGTCGGAAAAT
CCTTGGTGCTATGCACATCTTGCCTTGTTCCTGGTACGGCTTTTTCGTTC
TCTCTCTGCCCCTCTTGGCCATTTGTGAGTATATTTATTTGCTTGACGTC
AATCAAGGCGACCCTGAAAAGGCTACTGCTGTAGACCGCTTTCTTCGTTC
ATGAACACCGCATGACTTGGTCTTCCGCCAAGCTTAGTTGCCTCAAACGT
CCTGGTTTGCAAACTTATCTTGTGTTCAGGTAGGTGTGCTTGAACCGATC
GGTGATGATCGTGTATGTATCTCTTTTGGTGCTCCTGCCGCGGCAGGTGG
GAGTGAAGAGCTTCAAGAGCAGGAGCCTCCAGGCGTGGCAGGAGGACGGG
GCCGGCCACCTCTTCCCCGTAGACCCCAAGAAGGTGCGGAGATGCTGCAT
CATCGTATCCATGGTCCGTCGTCGTATAGACATCCCTCGTGCTTTGCGGG
TAAGCGGATCCCGGTCTGTATGGTTGGTTTCACACTTTCATGGTCGTCGC
ATTCACACCCCACGTGCTTTGCAGGGAAGTGGAATGCAGTATGTATGCAT
GGTCGGTTTCACACTCCACATGAACTGGGAACTGCTAGATTGATACCCAT
GTCTTAAAACACATTAGGCGAGAGCGTGGTGGGCCCTGTGTGACCCTGAG
AGTGGCGGCGATGATATCATGTGATTGACGTATCATAAATGCAATATGCT
TCGTGTATGTATGCTTTGCAGGAGTTAAGGATGACTCCTCTTCATGTCGT
AAAAACATTGTACTGTTGCCGGAGCCGACAAGCAACCAACTCTTGAAGCA
ACATCGGATGCAAAGTCTTCCCGATAGGCCCCCAGAAGCATTTGTTCAGT
TGGTACCACCGGCAACAGGCACAGCAAACGTAGAAGCTTGCGATGCACCC
CACAGAAAACTTCGAATGGAAAGGACGGCGGTGGTACGTAGAGGGTGTTT
TTTTTCCTGGCGTTTCATGCTGAAGCGTTCACCTTGCTTTCGTACTCTGG
ACGTCTCCAAATAAGTTAGGTGCCGCACGCCGCCCGGTATTCCACACTCC
CCCGGCTGAGCTTTCAAGCTGTGTGTTTCAACACGAGGAAACAGTGTGTG
TATTGTTAGTGGTCTGTCTTTGACAGTCCATACTTTCAAAATAGTGCCGT
CTAAGAAGATTTCGCCATATAGCTTTGTCTTCTCCAAAGAAAGACGCTTC
GCCGTGCCGTATACTTTGCTGGCAACGCCTGCGTTGCTGTGGAGATTCCG
AGCCATATTGGAAACCGACGCCGGTGTTGTACTGTATTCATGTATTTCGC
GTCTCGCGGTACGATGAAGAAATAGATGTGGCCTTCTCCGAGTTTGGGTT
TCCGACACATGGCGTGCTGGGTGATGTCGGGGCTTGCGACCCTACAGTAC
CCCATATCTTCCTTCAGGAGCCACACGCAATAGAGACGGAAATTTCGCCT
CTGGGACGAGTATCACCCTGAGTATATTATTATGTAGCGGGGAGGGCGTA
CTCCTGCAAATGCATGCCATACAGACCGGACCCCCAGTGAAGAAATGCTT
CATTAAGAAACAGAGACCAATTTTCCACAAAAATATGAACATGAGGTTTA
AAAAACACAGCTCGGCGGTGTATCCTATTCTAAACTCTACCGCACAACAA
CGTCTGCTCGATAGCAGCGCCAACGAAGTAAGACACTGAGGAGCCTCGAC
CCGATTTGGGCGCTTCTTATCTTCGGGCCCGTTCTGTAGTCGTTAGACCA
TAGACCCTGCAAGCCTACAATGCCGGGACGGAGCGATACGCCGCCGGGTT
TTGACCGGCCCAGGCAACGTTTCGCAAGGGTAAACCAGAAGCTGGTCATC
ATCCTTGCGTTTGCTGTGCCAAACCCGATATGCTGTGGGTTGATTGGGCC
CCCCGGCTGTTCAAGCGGGGGGGGGGCGCGCGCGGGGGCGTACTCTTCTG
TTTTGCATGCCTTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGAC
GGAGCGTTGTTTCCACAAGACGGATTACCGATGGCCAATCGCTCCTTCCT
ACTTGCCAAAGGCGGCTCAAAAATGTCTTCCCGAGTGTATCTATCCTACC
GATATCACTTCCCGCCTTTTCAACTCACTTCCTATGCCACAGTACAGCTA
ATGTCTTATCCTGGCTATCCCATGCCTCAAACATCTCCCTGTACTTTTCT
TCTACTTTTCCCAGCTCAGTCATGTACACGTCCCTCTCCTCCTTGTACAG
CCGACATTCCGCAACTACATGAACACGGTCTTCGCACTCGGAACCGCAAT
CACATTTGAACTTGGCGTCTTCGTCGTCTACCTTCTTATATCTTCGGCTA
CGTTCTCGAAGGTCAATGTCCCCGGTCCTGAATTTGACCTTCAGCTTTGT
CCCTGCATCCATTGGTCCATGTAGGTGCTCCTTGCACCCTATTCCTTCTT
TCAACATGCCGTACACTTCTATGCCCTCCTTATCCTTGGTTTCTTTTCTT
AGATTCCCTCCTTGTCTCTCGGCAAAAGCAACAGATATCTTCTCCGTGAA
CCCTTTTACCCCCTCCGTATCCAGCGTATCGTCTTCGTGGATTTCGAACC
CTTTCCATGCATCACCTATTACCTTGACCCACTCCGTGGGTTGTCCACCC
CTCTTCTTGTTTTCCCACTTTGCCTCCCAGGCTACTCTCGGCAACCTCTC
CTCCCCCATACCGCACATACGATACGCCATGTCAGCTTCCTTGCGCCTCG
TCCCGATCGTAGGGATTGGATCCCCAGTTCTGTCCTGACGGCTGCATTAC
TTGGGCGCTTGGAGCATCCTATGATGACTTTCGCTGCTTTCATCTGCACC
GCCTCGAGCTCTTTGACTAACTTCTTATTTCCTTCCAATACTTCTCCGGC
GTACTCTAGCGGCGGTACGCTTACACTCTTCCCTTCAATTTGATACATAC
GTGTATCGAGGTGCCGGTTTGCGAGTATTGGGTCCAGCTTCCCTGCTCAT
GTTTTGCCCTTTTCCGCTACCTTGGACATGTGTGCATTCCATGAGCAGTC
TTTTGCGATCTCTACTCCGAGGTATGTGTACTGGTCCACTACTGCAAGCT
CCTCGACCCCCCACCTCCATCTATATTCTACTGGTTCCTCCCTGTCCTCG
TTGCATACCATGGCGGCACTCTTCTTGACGTTGTTAGACAATCTCCGCTT
ATCGGCAAACTCCTTCGCCGCGTCAATTTGCATTTGCAGTCCCTCAGGGG
TGTCAGACACCCCAACAATGGCATCCGCAAACAGCATTCCCGACACCGTG
CTTTCCCCTACCTCTACTCCCTTCTCGACTGCTTCTACGACTTTCAACAG
ATCGTTGATGAACACGTGGAACAATGTTGGGAACAAAGTGAAACCCTGCG
GGGAGAGGGGGGAGGTTTGCCTGTGACGATTTACTGTAGCATGCTTGTCA
TACGTCATACATTCCTGCGGAAGTCGGTGGATAGAGGTTCTCTGCATTCC
GGTGCATGAGAAAAAAACTGGAAATAAACGTAGGAAGAAACGCAAGAAAA
AACGCAAGCGCCATCCGTTTTCTCTTGCGTTTCTTCCTACGTTTTTTCTG
ACCTGCCGGCAGCTGCAGAGAGCCCCCATCCGCCGCCTTCCGCAACGATA
TATGACGAATGCGGACCTCTTTCCCTCAAACATCCGCGATATTTAGCATT
CGTGTGTAATATGTGTGTGTCTCGTGTGTGCAGACCACCGAGGACGTTAA
AATGGCGACACTTTTGTCTTGTGGATGACGGGTGTACGCTTTGTCATCTG
GTTCGGACGGAAAGCTAAGAGCGTCATGGGGGGCAGGCAAGAGGGGGCGT
TCTCGTTCCGGCCCTTGGCGGGACGCTTCCGTCCCGTGCACGGTCTCCGG
TGGGTTGCCCGTCCCGCATTGCTTGCCCCACGGAACACACGGCATGCGCC
AAAACACAGCAGATCGAGACGCCTTTCGTGGTCATGAAGAGCGGAAGAAC
TACGGCAGCAACGAATGCTCGTCTGGCTTCGGGGTAGAAGTCACGCGCGC
ACTTCGATGAAAGCTGCCCGAACCGCAAAGAGAGCGCGACCAAACCAACT
CGACCGAGCACCTCTGGTGCTTGCAAGAGACTCGAGTTGTTGCTTCTTCC
GTGGGAGTTCCGGCAGCCACTGTACATACGACTTCATGACCGGGCATCGC
TATCGTGTGTTGGTTTTAACAAAGAAACCTCTGAGCACTGGTCCCTTTGT
CCTCCAAGTTCTCAAGTGGGTAGCGCCAAGCAAGCAACTTAAAATTATAC
GGCTCTGAGCATTGCAAACGGAATGCTGGCAAACAAGGAAGAGAGGGAGC
ATTCTAAACAACAATTTCGTTCACCCAACGACAACGAACACTACCACCTT
CGATGGCAGGTTAAATCGGGAGAGATCCCTCCCGAAAAGACCCCGTACAT
GCAGAGGAAGGGGGCGTGGGACAACTCCGACCTGGCCAAGAAGAACCTCC
AGAAGAAGTGGTCCGCCACAGACAAGGCTTACGCTACGGTGAGTTGGGGA
CAGAAGCCCTTTTTAGGTTTTTTGGTTTTGCGTGTGTTGTTTCGCCCAGC
TCTCATGTTCCTGTTCTCACTTCAGTGACGTTAGGCCTCTAGTTTTTTTT
TTTCACCTTTGACATTTAGATTTTGTCCCGCTTTCACCTTCTTGCTCTGA
TTGCAGTGGTGCATGTAGACGTTTTCGTCCAGCTTTGGTGTCCATATGTA
CTCTCGGCTCATATCTTACGAAGTACATACACCTGGTCCCACTTTTTAGT
ACCAGGGGAAGGAAAAGTAGCGCGAGCCGCTTTCCTTTCCTTGTGCTGAA
ATGATCAAGGTAGGGGTGCGAAAAGACAAGGGCAAAACTTGGTTCATGCG
TGTTTCTCTTTCGTGGTTGTTGAGCAGCAAGTCTGACTTCACGCCTACCT
CGTACCCCAAGGTCGTGTTCTACGTGGCGGACTGCAGGGTCCACTTTTCT
TCCGCTTGGCTATGCGATACCTTTGTTTTTGTCTGACTCTCTTTATCTCT
CCCTCTCTGGCCCCCTCTCGTGCAAATATCCCGTGCAAGTCAAACCCATA
CAGTAGAGAGGCGCAACAGCCAGTTGATTTTTTCATATGTTTGTCTGTAG
ATGAATTGATTCCAGAGAGCACGCCCCGTCGTTTTTGCTCGTCTTGGTTT
ACAATAACCACACCATCTCCCCCATCTCTCCCCCCCCCTCCGAAAGAAAC
CGACAACGGCGGCGGAGAAGAAGGCGGCGGCGGCCAAGAAGGCGGCAGAC
GACAAGAAGAAGGCACAGAAACAGCAGAAGCTCAACCCCGACGATGTCGG
AAAGAAGAAGGGGATGTTCGGTCTTTGGTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:628080..634660+

>mRNA_E-siliculosus-1a_M_contig84.16562.1 ID=mRNA_E-siliculosus-1a_M_contig84.16562.1|Name=mRNA_E-siliculosus-1a_M_contig84.16562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:628080..634660+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTGTCTGGTACGTGTTCCGGCTAGGGGTGCTGGCGGCAGCAGCAGC
TGCCTCTGCTGTTGCTTCTCCTGCCGAAGCCTTCATTACTTCGTTCGGAG
GAGGAGGATCGAAGATGCTGCGTGTCGGGCAACGACACCAGCCTTCGTTT
AGAAGCAGCAGCAGCTGCTCCAGGCAGCGTCGCGCCGACCTCGGCATGAA
GTACGTCCCTGACGGCCTTTCCCCGGAGCAGTGGAGGAAGATGCAGACGG
AGGAGGCTGAGAAGAAGAAAAAGATGGGCGACCTTGGGCAGATGGGTGTC
TGGTACGTGTTCCGGCTAGGGGTGCTGGCGGCAGCAGCAGCTGCCTCTGC
TGTTGCTTCTCCTGCCGAAGCCTTCATTACTTCGTTCGGAGGAGGAGGAT
CGAAGATGCTGCGTGTCGGGCAACGACACCAGCCTTCGTTTAGAAGCAGC
AGCAGCTGCTCCAGGCAGCGTCGCGCCGACCTCGGCATGAAGTACGTCCC
TGACGGCCTTTCCCCGGAGCAGTGGAGGAAGATGCAGACGGAGGAGGCTG
AGAAGAAGAAAAAGATGGGCGACCTTGGGCAGGTGGGAGTGAAGAGCTTC
AAGAGCAGGAGCCTCCAGGCGTGGCAGGAGGACGGGGCCGGCCACCTCTT
CCCCGTAGACCCCAAGAAGGTGGGAGTGAAGAGCTTCAAGAGCAGGAGCC
TCCAGGCGTGGCAGGAGGACGGGGCCGGCCACCTCTTCCCCGTAGACCCC
AAGAAGGTTAAATCGGGAGAGATCCCTCCCGAAAAGACCCCGTACATGCA
GAGGAAGGGGGCGTGGGACAACTCCGACCTGGCCAAGAAGAACCTCCAGA
AGAAGTGGTCCGCCACAGACAAGGCTTACGCTACGGTTAAATCGGGAGAG
ATCCCTCCCGAAAAGACCCCGTACATGCAGAGGAAGGGGGCGTGGGACAA
CTCCGACCTGGCCAAGAAGAACCTCCAGAAGAAGTGGTCCGCCACAGACA
AGGCTTACGCTACGAAACCGACAACGGCGGCGGAGAAGAAGGCGGCGGCG
GCCAAGAAGGCGGCAGACGACAAGAAGAAGGCACAGAAACAGCAGAAGCT
CAACCCCGACGATGTCGGAAAGAAGAAGGGGATGTTCGGTCTTTGGTAGA
AACCGACAACGGCGGCGGAGAAGAAGGCGGCGGCGGCCAAGAAGGCGGCA
GACGACAAGAAGAAGGCACAGAAACAGCAGAAGCTCAACCCCGACGATGT
CGGAAAGAAGAAGGGGATGTTCGGTCTTTGGTAG
back to top