mRNA_E-siliculosus-1a_M_contig84.16556.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16556.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16556.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 573 bits (1476), Expect = 6.760e-200
Identity = 325/407 (79.85%), Postives = 329/407 (80.84%), Query Frame = 1 
Query:    1 ANVTRTLLPLAPFVVEVPALAAHARAAWPWARSAMTAAVAAAFSRRPFAFVNPPTQPRPYRRWHQQQXXXXPRAIARIRGEREEQQACCGPSPQGRRGFFSLSSGGSGSGSDXXXXXXNDRSALDPNSRSPSCCRDVDVATSSLTRRGAIGETLVSAARWWAVAAAGSSGAFADADVGSTGVGGRLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKVKGGGGG 1221
            ANVTR LLPLAPFVVEVPALAAHARAA PWARSAMTAAVAAAFSRRPFA                                               RGF  LS GG      XX    NDRSALDPNSRSPSCCRDVDVAT SLTRRGAI ETLVSAARWWAVAAAGSSGAFADADVG+TGVG +LSSKALTKESYDGFAEGYDDLDGGWAASAIGLE       A ATGRVLEVGVGTGLNLRHYRRDLVS IEAVDLSPGMLSQASSRSESLGMKRLV LSVMD EHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKS+FGPLAAYQD TASFLV+KGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKV GGGGG
Sbjct:  137 ANVTRNLLPLAPFVVEVPALAAHARAARPWARSAMTAAVAAAFSRRPFA-----------------------------------------------RGFICLSGGGXXXXX-XXGSSTNDRSALDPNSRSPSCCRDVDVATPSLTRRGAIEETLVSAARWWAVAAAGSSGAFADADVGATGVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLE-------ASATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQASSRSESLGMKRLVNLSVMDVEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSNFGPLAAYQDFTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKVMGGGGG 488
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 454 bits (1167), Expect = 8.980e-157
Identity = 233/243 (95.88%), Postives = 238/243 (97.94%), Query Frame = 1 
Query:  472 ARWWAVAAAGSSGAFADADVGSTGVGGRLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAK 1200
            ARWWAVAAA SSGAFAD DVG+TGVG +LSSKALTKESYDGFAEGYD+LDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVS IEAVDLSPGMLSQASSRSESLGM+RLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLV+KGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLEC PAK
Sbjct:    2 ARWWAVAAAASSGAFADTDVGATGVGDQLSSKALTKESYDGFAEGYDNLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQASSRSESLGMERLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECAPAK 244
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.330e-68
Identity = 125/215 (58.14%), Postives = 142/215 (66.05%), Query Frame = 1 
Query:  559 SSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKV 1203
            S KA  K+SYD FA  YD LDG   A  +G+++LR  + + A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+QA  R    G++ +     MD E L F    FDTVVDTF LCVF DP AALREM RVC   GRVLLLENSKS+   L AYQDLTA  L     +KGC WNQDVEAL R AGL VV S    AG LFR +EC P + 
Sbjct:   17 SDKAFAKQSYDTFASSYDGLDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQDLTAGALSRI--SKGCVWNQDVEALARSAGLTVVHSYKCAAG-LFRAVECTPGRA 228
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A7S0WEJ0_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WEJ0_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 1.720e-55
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1 
Query:  577 KESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSV-MDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVP 1194
            K +YDG+A  YDDLDGG AA A+GL+ +R   L GA+G VLE+ VGTGLNL  Y    ++   A+DLSPGML+QA  R++ L  +R     +  DA  L F   +FD VVDTFSLCV  +  AALRE+ RV +P+GR +L+E+SKSD GPL AYQDLT+  + S   +KGC WNQDVE L R +GL+VV    AL G L   +E  P
Sbjct:   52 KRAYDGYASTYDDLDGGSAAKALGLDAMRGDALRGASGDVLELAVGTGLNLASYDMSKINTFTAIDLSPGMLAQAKVRADELNFRRESSRFIEADATALPFEDASFDVVVDTFSLCVIENSVAALREVRRVLRPSGRAVLIEHSKSDVGPLGAYQDLTSKPVKSM--SKGCVWNQDVEGLLRESGLKVVSVQRALLG-LLVVVEAKP 255
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A836BNX8_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNX8_9CHLO)

HSP 1 Score: 187 bits (474), Expect = 4.180e-52
Identity = 114/237 (48.10%), Postives = 145/237 (61.18%), Query Frame = 1 
Query:  559 SSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDL-------------------VSDIEAVDLSPGMLSQASSRSESLGMK--RLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKVK 1206
            S+ A  +++YD +A  YD+LDGG AA A+G  +LR QLLA A GRVLEV VGTGLNL +Y  D                    VS +EAVDLSPGML QA  R+++      R +     D   L +  ++FD+VVDTFSLCVF DP  AL+EMARV +P+GRVLLLE+++SD   LAAYQD TA  + + G  KGC WNQDVE L   AGL V  +  + AG    T+E + A  +
Sbjct:   48 SAAAEVQQAYDRYAGSYDELDGGVAAEALGFPQLRQQLLAQARGRVLEVAVGTGLNLPYYSWDERSGAASGDEAAAAVAESRGVSSVEAVDLSPGMLDQARRRTQASPALSGRSISFRQADVTALPYGDDSFDSVVDTFSLCVFPDPGTALKEMARVVRPSGRVLLLEHTRSDNPLLAAYQDATAGPVAALG--KGCVWNQDVEGLAAAAGLRVEAAERSAAG----TVELLVATKR 278
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A8J9WTP0_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTP0_9CHLO)

HSP 1 Score: 183 bits (465), Expect = 1.990e-51
Identity = 104/212 (49.06%), Postives = 131/212 (61.79%), Query Frame = 1 
Query:  550 GRLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLE 1185
            GR       +E+YD +A  YD LD   A  A+G  ELR +L+A A G+VLE+ VGTGLNL  Y  D +  + A+D+S GML QA  R++ L  +  V     D   L F +  FD V+DTFSLCVF DP+AA+RE ARV +P G +LLLE+ +S F PLA YQDLTA  + + G  KGCFWNQDV  L   AGL V R   ++ GGL   LE
Sbjct:   15 GRSIPAVRIEEAYDQYAGSYDVLDSSAATDALGFPELRRELIAEAHGKVLELAVGTGLNLPLYHPDQLESLSALDISAGMLQQARMRAQGLSSQLPVTFLQGDVAALPFEAAYFDCVLDTFSLCVFPDPAAAVREAARVLRPGGTLLLLEHQRSPFAPLAWYQDLTADAVAAMG--KGCFWNQDVAGLLNAAGLRVQRKKESI-GGLIVLLE 223
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A061R1H8_9CHLO (Methyltransferase type 11 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1H8_9CHLO)

HSP 1 Score: 185 bits (470), Expect = 2.090e-51
Identity = 107/205 (52.20%), Postives = 126/205 (61.46%), Query Frame = 1 
Query:  583 SYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPA 1197
            +YD +A  YD+LD G AA  + L ELR  LL  A+G VLEVGVGTG+NL  Y +  VS +  VDLS GML +A  R   +G   LV L   D E L F   +FD VVDTFSLCV+ DP  ALREMARV +P G VLLL +++S F PLA YQD TA  +   G  +GC WNQDV  L   AGLEVV     L GGL   +   PA
Sbjct:   85 AYDRYASEYDELDDGMAADFLRLPELRRSLLRRASGNVLEVGVGTGINLPLYDKRKVSSVTGVDLSVGMLHEAEQRVRRIGSDGLVTLQQADVESLPFADSSFDAVVDTFSLCVYPDPLQALREMARVLRPGGSVLLLAHTRSTFTPLAVYQDATAQVVRRMG--RGCEWNQDVGGLAASAGLEVVEQERHL-GGLISLVVAHPA 286
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: E1Z8H8_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8H8_CHLVA)

HSP 1 Score: 181 bits (458), Expect = 1.480e-50
Identity = 101/209 (48.33%), Postives = 132/209 (63.16%), Query Frame = 1 
Query:  577 KESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHL--GFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPA 1197
            +++YD +A  YD LDGG AA  +G   LR QLL  A G VLE  +GTGLNL  Y    ++ + A+DLS GML++A  R+E LGM   V+L   D EHL       AFDTVVDTFSLCVF DP AA+REMA   +P G +LLLE+S+S+FGPL  YQD+TA  +++ G  KGC WN +V      AGL++ R    +AG +   +   P+
Sbjct:    4 EKAYDRYAATYDLLDGGDAAEQLGFPALRQQLLRRAQGAVLETAIGTGLNLPFYDTAALASLTAIDLSSGMLARARQRAEQLGMADSVQLVQADVEHLQEALGGRAFDTVVDTFSLCVFPDPGAAIREMAACLRPGGVLLLLEHSRSEFGPLGWYQDVTAPAVMAAG--KGCRWNDNVSQHVEAAGLKIKRVERHVAGLIVSVVAVKPS 210
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A4D9D970_9STRA (THUMP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D970_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.070e-48
Identity = 109/210 (51.90%), Postives = 137/210 (65.24%), Query Frame = 1 
Query:  577 KESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVS----DIEAVDLSPGMLSQASSRSESLGM-KRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKP-AGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLEC 1188
            K +YD +A  YD LDGG AA  +GL+  R  L+  A G +LE GVGTGLNL  Y     S     ++A+DLSPGML +A S++  L +    V+   MD   + F  E+FD V DTFSLCV+ DP+ AL+EMARVCK  +GRVLLLENS+S+  P+AAYQD+TA F+   GG KGC +NQDV +L R AGL V+   P L GGL   LEC
Sbjct:  546 KGAYDEYASSYDGLDGGDAARFLGLDAARKDLIGLARGHILECGVGTGLNLPFYEFGSGSAPAVSLDAIDLSPGMLREARSKAAFLNLGPDAVRFHEMDVAKMNFADESFDCVCDTFSLCVYLDPAKALKEMARVCKAVSGRVLLLENSRSNLLPVAAYQDVTAGFVARYGG-KGCVYNQDVASLARQAGLRVMSQKPLL-GGLITMLEC 753
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Match: A0A7S2B2V6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2V6_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.120e-48
Identity = 94/183 (51.37%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:  658 LRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKVK 1206
            LR+ L+  A+GRVLEVGVGTGLNL  Y    V+ +E +DLS GMLS A ++ +++ +   V+LS MD   L FPS +FDTVVDTFSLCVF DP  AL+EM RVC P GR+LLLE+S ++   +A YQD+TA+ + S   +KGC WNQ +  L + AGLEV RS  ++ GG+ R +E  P   +
Sbjct:    1 LRAMLIGKASGRVLEVGVGTGLNLPFYDTTRVTSLEGIDLSDGMLSIAQTKRKAIPLNDKVRLSRMDVSALDFPSRSFDTVVDTFSLCVFPDPQKALQEMCRVCAPDGRLLLLEHSAAENPLVALYQDVTAAPITSM--SKGCVWNQRLGPLLQNAGLEV-RSQRSVLGGVLRVIEATPVASR 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H3_9PHAE6.760e-20079.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ21_ECTSI8.980e-15795.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CG23_9STRA1.330e-6858.14S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S0WEJ0_9CHLO1.720e-5552.17Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A836BNX8_9CHLO4.180e-5248.10Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A8J9WTP0_9CHLO1.990e-5149.06Probable ubiquinone/menaquinone biosynthesis C-met... [more]
A0A061R1H8_9CHLO2.090e-5152.20Methyltransferase type 11 n=1 Tax=Tetraselmis sp. ... [more]
E1Z8H8_CHLVA1.480e-5048.33Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A4D9D970_9STRA1.070e-4851.90THUMP domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2B2V6_9STRA1.120e-4851.37Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:555365..559591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1128
Model size1466
Exons5
Ec32 orthologEc-15_001250.1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko01000,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Q
EggNOG OGsCOG0500@1,KOG4300@2759
EggNOG free text desc.methyltransferase activity
KEGG koko:K17803
Seed eggNOG ortholog2880.D8LQ21
Seed ortholog evalue1.6e-125
Seed ortholog score456.1
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936291.622253-UTR-E-siliculosus-1a_M_contig84:555364..5554661622936291.622253-UTR-E-siliculosus-1a_M_contig84:555364..555466Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 555365..555466 +
1696251011.31767-UTR-E-siliculosus-1a_M_contig84:555364..5554661696251011.31767-UTR-E-siliculosus-1a_M_contig84:555364..555466Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 555365..555466 +
1622936291.8206515-UTR-E-siliculosus-1a_M_contig84:559355..5595911622936291.8206515-UTR-E-siliculosus-1a_M_contig84:559355..559591Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 559356..559591 +
1696251011.3876042-UTR-E-siliculosus-1a_M_contig84:559355..5595911696251011.3876042-UTR-E-siliculosus-1a_M_contig84:559355..559591Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 559356..559591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936291.6396518-CDS-E-siliculosus-1a_M_contig84:555466..5560181622936291.6396518-CDS-E-siliculosus-1a_M_contig84:555466..556018Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 555467..556018 +
1696251011.3320289-CDS-E-siliculosus-1a_M_contig84:555466..5560181696251011.3320289-CDS-E-siliculosus-1a_M_contig84:555466..556018Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 555467..556018 +
1622936291.6616907-CDS-E-siliculosus-1a_M_contig84:556410..5565541622936291.6616907-CDS-E-siliculosus-1a_M_contig84:556410..556554Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 556411..556554 +
1696251011.3495517-CDS-E-siliculosus-1a_M_contig84:556410..5565541696251011.3495517-CDS-E-siliculosus-1a_M_contig84:556410..556554Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 556411..556554 +
1622936291.7183945-CDS-E-siliculosus-1a_M_contig84:557543..5576811622936291.7183945-CDS-E-siliculosus-1a_M_contig84:557543..557681Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 557544..557681 +
1696251011.3612297-CDS-E-siliculosus-1a_M_contig84:557543..5576811696251011.3612297-CDS-E-siliculosus-1a_M_contig84:557543..557681Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 557544..557681 +
1622936291.733155-CDS-E-siliculosus-1a_M_contig84:558659..5587271622936291.733155-CDS-E-siliculosus-1a_M_contig84:558659..558727Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 558660..558727 +
1696251011.3703544-CDS-E-siliculosus-1a_M_contig84:558659..5587271696251011.3703544-CDS-E-siliculosus-1a_M_contig84:558659..558727Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 558660..558727 +
1622936291.804362-CDS-E-siliculosus-1a_M_contig84:559129..5593551622936291.804362-CDS-E-siliculosus-1a_M_contig84:559129..559355Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 559130..559355 +
1696251011.3792515-CDS-E-siliculosus-1a_M_contig84:559129..5593551696251011.3792515-CDS-E-siliculosus-1a_M_contig84:559129..559355Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 559130..559355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16556.1prot_E-siliculosus-1a_M_contig84.16556.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 555467..559355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16556.1

>prot_E-siliculosus-1a_M_contig84.16556.1 ID=prot_E-siliculosus-1a_M_contig84.16556.1|Name=mRNA_E-siliculosus-1a_M_contig84.16556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=376bp
MTAAVAAAFSRRPFAFVNPPTQPRPYRRWHQQQQQQQPRAIARIRGEREE
QQACCGPSPQGRRGFFSLSSGGSGSGSDGGSNSTNDRSALDPNSRSPSCC
RDVDVATSSLTRRGAIGETLVSAARWWAVAAAGSSGAFADADVGSTGVGG
RLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEELRSQLLAGATGRVLE
VGVGTGLNLRHYRRDLVSDIEAVDLSPGMLSQASSRSESLGMKRLVKLSV
MDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLEN
SKSDFGPLAAYQDLTASFLVSKGGAKGCFWNQDVEALCRGAGLEVVRSSP
ALAGGLFRTLECVPAKVKGGGGGGS*
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mRNA from alignment at E-siliculosus-1a_M_contig84:555365..559591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16556.1 ID=mRNA_E-siliculosus-1a_M_contig84.16556.1|Name=mRNA_E-siliculosus-1a_M_contig84.16556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4227bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:555365..559591+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGAACGTCACCCGGACCCTGTTGCCGCTGGCGCCCTTCGTCGTCGAAGT
CCCGGCGCTTGCGGCGCACGCCCGCGCCGCGTGGCCATGGGCGCGCTCCG
CGATGACCGCCGCCGTCGCCGCCGCGTTCTCCCGCCGTCCTTTCGCGTTC
GTCAATCCCCCCACCCAACCCCGACCCTACCGGCGATGGCATCAGCAGCA
GCAACAGCAGCAGCCAAGAGCGATAGCGAGAATACGGGGGGAGCGAGAAG
AACAACAAGCCTGCTGTGGACCTTCTCCGCAGGGCAGGCGCGGTTTTTTT
AGCCTTAGCAGTGGTGGTAGTGGTTCCGGATCCGACGGCGGTAGTAATAG
CACGAACGACCGGAGCGCTCTTGATCCGAATAGTCGGTCTCCCTCTTGCT
GCCGCGACGTCGACGTCGCGACGTCATCCTTAACACGACGCGGGGCAATA
GGGGAAACGCTTGTCTCCGCGGCGCGGTGGTGGGCAGTGGCAGCGGCGGG
ATCGTCGGGGGCGTTCGCGGATGCTGACGTGGGGTCAACAGGGGTTGGGG
GTCGGCTGAGTTCGAAGGCACTCACGAAGGAATCCTACGACGGTTTCGCC
GAGGGGTACGATGACCTGGACGGCGGTTGGGCGGCATCGGCCATCGGACT
GGAGGCGAGTTAGACCGCGCTTGAACGTGTGCCCTTCTTGTTTTTATTTC
TCTCATTTTAGGCAGGCGCAACAATCTTGGATTCTTCTTCTCCGCGGCGA
ACGCACACTGGTGCACGCCACCTTTTTTTTTTGACATCGTGGACCTTCTA
TAACGGTGTGACCGGTATGTACCAATCGACACCAATCATGTGAGCTGTTG
GTTGGCGAAGTCCTGGATATCTGCGTTTGTTTCACCCGAACCGCTCATCG
GTGCCGCCCAAGTAACCGGTTACCCACCGTACCCGTTGATCGAGAGCAGC
ACGACAGTCGGAGGGCAACTCACGACATGCTCGTTGTTCGTGAGGGAAAC
CCTGTACGTTCCTCAACTTGCTGCCGTCTGGATGTACTTCCCGCAGGAGC
TACGATCACAGTTGCTAGCAGGCGCCACCGGGCGAGTTCTAGAGGTCGGG
GTGGGTACGGGACTCAACCTGCGGCATTACCGGCGTGATCTCGTGTCGGA
CATCGAGGCGGTGGACCTAAGTCCGGGCATGCTGAGCCAGGTTTGATTCC
GTCCTTGTTGACCTAGGTCCTGTGTTGATTTTCTCTCGGATGTCTCTGAT
TGCTTGTCCTTGTTGACCTAGGTACTCAAGACATGTGTTGGTTTTCTCTC
GAATGTCTCTGAGTCTGTCCTCGTTGAGCTAGGTCCGCAGACATGTGTTC
GTTTGCTCTCGATCATTTGTAACTGTCCGAGTTTGTGTACGCCGAGGGGG
TTCCGTCTCTCAAGTCCTTCTCGTTTTTGCTCCTAGACAAACACCTGACG
GCGGGCAAAGGCTTAACCGCATACAAGTACCATGCACGGAAGTGCGCATG
GTCACCACGCGATATGTGCACGGTTTGTGAGGCAGTCGATTGGCTGCCTC
GGTCCGCAAGAATGAATGCTCATCCAACAGTAGGCTGAATGATTCGACCA
TTGGCCACACGCGGTTCTGCTGCGGACCAAAATACTTTCCTGCTCAAGAT
TGACCAAAGATACTCCCGCATAAGACAGCAACCCCACAGCAGTACCTCGC
CCGGTGGCACAGGTTAACATGAGGAGCCCACAACACAAAAACCTGCTCTC
AGATCCACGTACGCGGGTGCATTACGATACCATACACCCCACAGAAAACA
CACGCAGGGGGGAGGGGTGCTTTCTTGCGTCACGTACGTTATGTAGTGAC
ACAAGGATGCCTTTCGAGGATGGAGTTTGTGTCGATGAACACGATACGAA
GACGCAGCAGATGCTGTGGAATTGTTAGGACGCACAGTTCGACGATGAAC
ACAAGATTATTACCAGCGTCAACGTGTATTTTGGCATTTTGCGGGCACGA
GAGCTCGCTCTTGCTCTCACATCGGCCTAACACGACCGTCATCAACAATT
GGCGGTGCTACGCGATGACCCGCGCAGTTTTGACATTTTGCCGACATAAG
AGCTCGTGCTTGTTATCACAACACGAGCTAACACGACCGTTCGCAACAAT
CGGCGGTGTTTTCGCAATGACACGGGCAGGCATCGTCCAGGAGCGAGTCT
CTGGGCATGAAACGGCTCGTCAAGCTGTCGGTGATGGACGCCGAGCACCT
CGGTTTTCCATCAGAGGCGTTCGACACGGTCGTGGACACCTTTTCTCTCT
GCGTTTTTTCAGACCCGGTGCGTGCAGCAGTAGCTTATTTGTTTGTTTTT
TTCTTGACACCACAGACAGTATTATGCCACTCCCGTGAACAGGAGGGAAT
CGACAAACTCGTTTACGGACTGGAGAGAACGATGGTTGATTGTCGGGTCC
ATCGGACCACGGTTTGCTTCCTACACTAATCTCTCTCTCGAAAATATATT
TTGCTTCGCGTTGCGGTGTGGTAGGTTGTAGACGACCGTCCTCGTTGGGT
GTCCGCGAGAACGTAGTAGCATTCCATGCTCTGTCGTTGTGTCCGGGACC
TTCTTTTTCTTGGAGCGATTGTGTTCGAAACGATTCGGAGGAATGGATGA
GTACGATGTGCCACTGCCGTTTAAACGTTGTGCACTTGGAACTACGCCCG
TGGTTTGGAAGCAGATTGGTCGTGGCTCGTTTCTCCCAGTACACGTCCAC
TCTTTGGTAGAAACTGGGTGCCTTGCGTTATAAGGAGGTAATCTAATCGG
CGGTGTATGTACGCGGTCACAGGTCAGGTGTATGTAGAGACACTGCGTAG
ATTCCTCCCCGGCGAGCCGCTCTATCTCTCTCTGCACACCGCTGCAGTCA
GGGGTGTTGCCGCAAGATGTACCACGTGCTGCTCATTCTCGAACCAGCGT
CACATCGTGTTGGTACTCGCTTTTCGGACCAGCCTCGCATAGTGGTCGTT
CATCGTGCTGGTTGGCGCTACTAGTTTTTTGGAAGATCCTCGCATCGTGC
CGCTGTGTCGGTGCTTGTGTCGTTTCGGCTCTTCTTATCTTGGTCCCTAC
GTTTTATCCTCGGCAGAGCGTGTGTAAATGTGTAGCAGCAGGACCAACAC
CGTCGCCCAATTGATTGACCACCGCCGTTGCCGTACCCGCTTGCCGTCTG
GGTATATGTGCACGCACACACACACACCCTGCGGGTATTTGACATGTGTG
CACGCATACGCGCAACCCGTGGCGAAACCATGCGCGACGAAGTAGTCGGC
TGCTCTGCGAGAGATGGCGCGGGTTTGCAAGCCGGCGGGACGGGTTCTTC
TTCTGGAGAACAGGTGAGTTTTGTCGCATGGCTTGGTCTGACTGAGTCGG
GAAGCCCCTCGGGAAGAGTAGGGACGGCAGAAACATCCAGCACAATAGAC
CGCTGCGTGATATCATGCGCCATGTCCAAGCCAGGCTAATGCCGCGCACG
CCTGGCATCTCTACCTCATTTGCTGACGAGTGTGCTAAATACTGGATGTT
TCCCCGCGTGTGGCACGCACGCACACACATCTATGCGTTCTTGTTATACA
GCGTGATTGCGTTTACCCCGCTACTGTATACGGCTGTATCCGCTATAAGA
CTGACGCCTTTTCATCGGTAAGCCGATTGGCTCGGTCGATGCTCATTGAT
TAAATACACCTCCGTGAGTAACCAACCCCCCTCCCCGCTCTTAACCTCAC
GTTCACTCTCTGCAGCAAGAGTGACTTCGGCCCTCTGGCCGCGTACCAGG
ACCTCACGGCCTCGTTTTTGGTCAGCAAGGGCGGCGCTAAGGGGTGCTTC
TGGAACCAAGACGTGGAGGCGCTGTGCCGGGGGGCGGGGCTGGAGGTTGT
GCGCTCGTCGCCAGCTCTTGCCGGGGGGTTGTTTCGCACTCTGGAGTGCG
TGCCTGCGAAGGTCAAGGGCGGCGGCGGCGGCGGTAGCTGATGCATGTCC
CATGTCTATAGCAACCCGTGGTGCTTCCTTTGGGGGGGGGCTGCGTGCTT
CACACGACGAGATGTCATTGTAGATCGTCTTCGGGGCACGGCATGATGCT
GGTAGATTGACGAGATTGTATCGTGTGGTTTTGTAGTGTGCGTTAGGGTG
GACGCTTGCCAGTCTAAAACATGTCCAACAATCGTTGCGCATGCATGTGT
AGCAGAAATGTTGCGTTGGGTTCTGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:555365..559591+

>mRNA_E-siliculosus-1a_M_contig84.16556.1 ID=mRNA_E-siliculosus-1a_M_contig84.16556.1|Name=mRNA_E-siliculosus-1a_M_contig84.16556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2256bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:555365..559591+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACCGCCGCCGTCGCCGCCGCGTTCTCCCGCCGTCCTTTCGCGTTCGT
CAATCCCCCCACCCAACCCCGACCCTACCGGCGATGGCATCAGCAGCAGC
AACAGCAGCAGCCAAGAGCGATAGCGAGAATACGGGGGGAGCGAGAAGAA
CAACAAGCCTGCTGTGGACCTTCTCCGCAGGGCAGGCGCGGTTTTTTTAG
CCTTAGCAGTGGTGGTAGTGGTTCCGGATCCGACGGCGGTAGTAATAGCA
CGAACGACCGGAGCGCTCTTGATCCGAATAGTCGGTCTCCCTCTTGCTGC
CGCGACGTCGACGTCGCGACGTCATCCTTAACACGACGCGGGGCAATAGG
GGAAACGCTTGTCTCCGCGGCGCGGTGGTGGGCAGTGGCAGCGGCGGGAT
CGTCGGGGGCGTTCGCGGATGCTGACGTGGGGTCAACAGGGGTTGGGGGT
CGGCTGAGTTCGAAGGCACTCACGAAGGAATCCTACGACGGTTTCGCCGA
GGGGTACGATGACCTGGACGGCGGTTGGGCGGCATCGGCCATCGGACTGG
AGATGACCGCCGCCGTCGCCGCCGCGTTCTCCCGCCGTCCTTTCGCGTTC
GTCAATCCCCCCACCCAACCCCGACCCTACCGGCGATGGCATCAGCAGCA
GCAACAGCAGCAGCCAAGAGCGATAGCGAGAATACGGGGGGAGCGAGAAG
AACAACAAGCCTGCTGTGGACCTTCTCCGCAGGGCAGGCGCGGTTTTTTT
AGCCTTAGCAGTGGTGGTAGTGGTTCCGGATCCGACGGCGGTAGTAATAG
CACGAACGACCGGAGCGCTCTTGATCCGAATAGTCGGTCTCCCTCTTGCT
GCCGCGACGTCGACGTCGCGACGTCATCCTTAACACGACGCGGGGCAATA
GGGGAAACGCTTGTCTCCGCGGCGCGGTGGTGGGCAGTGGCAGCGGCGGG
ATCGTCGGGGGCGTTCGCGGATGCTGACGTGGGGTCAACAGGGGTTGGGG
GTCGGCTGAGTTCGAAGGCACTCACGAAGGAATCCTACGACGGTTTCGCC
GAGGGGTACGATGACCTGGACGGCGGTTGGGCGGCATCGGCCATCGGACT
GGAGGAGCTACGATCACAGTTGCTAGCAGGCGCCACCGGGCGAGTTCTAG
AGGTCGGGGTGGGTACGGGACTCAACCTGCGGCATTACCGGCGTGATCTC
GTGTCGGACATCGAGGCGGTGGACCTAAGTCCGGGCATGCTGAGCCAGGA
GCTACGATCACAGTTGCTAGCAGGCGCCACCGGGCGAGTTCTAGAGGTCG
GGGTGGGTACGGGACTCAACCTGCGGCATTACCGGCGTGATCTCGTGTCG
GACATCGAGGCGGTGGACCTAAGTCCGGGCATGCTGAGCCAGGCATCGTC
CAGGAGCGAGTCTCTGGGCATGAAACGGCTCGTCAAGCTGTCGGTGATGG
ACGCCGAGCACCTCGGTTTTCCATCAGAGGCGTTCGACACGGTCGTGGAC
ACCTTTTCTCTCTGCGTTTTTTCAGACCCGGCATCGTCCAGGAGCGAGTC
TCTGGGCATGAAACGGCTCGTCAAGCTGTCGGTGATGGACGCCGAGCACC
TCGGTTTTCCATCAGAGGCGTTCGACACGGTCGTGGACACCTTTTCTCTC
TGCGTTTTTTCAGACCCGTCGGCTGCTCTGCGAGAGATGGCGCGGGTTTG
CAAGCCGGCGGGACGGGTTCTTCTTCTGGAGAACAGTCGGCTGCTCTGCG
AGAGATGGCGCGGGTTTGCAAGCCGGCGGGACGGGTTCTTCTTCTGGAGA
ACAGCAAGAGTGACTTCGGCCCTCTGGCCGCGTACCAGGACCTCACGGCC
TCGTTTTTGGTCAGCAAGGGCGGCGCTAAGGGGTGCTTCTGGAACCAAGA
CGTGGAGGCGCTGTGCCGGGGGGCGGGGCTGGAGGTTGTGCGCTCGTCGC
CAGCTCTTGCCGGGGGGTTGTTTCGCACTCTGGAGTGCGTGCCTGCGAAG
GTCAAGGGCGGCGGCGGCGGCGGTAGCTGACAAGAGTGACTTCGGCCCTC
TGGCCGCGTACCAGGACCTCACGGCCTCGTTTTTGGTCAGCAAGGGCGGC
GCTAAGGGGTGCTTCTGGAACCAAGACGTGGAGGCGCTGTGCCGGGGGGC
GGGGCTGGAGGTTGTGCGCTCGTCGCCAGCTCTTGCCGGGGGGTTGTTTC
GCACTCTGGAGTGCGTGCCTGCGAAGGTCAAGGGCGGCGGCGGCGGCGGT
AGCTGA
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