mRNA_E-siliculosus-1a_M_contig84.16539.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16539.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16539.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:375280..378480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size405
Model size405
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16539.1prot_E-siliculosus-1a_M_contig84.16539.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 375280..378480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936281.713182-CDS-E-siliculosus-1a_M_contig84:375279..3755311622936281.713182-CDS-E-siliculosus-1a_M_contig84:375279..375531Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 375280..375531 +
1696251006.7556467-CDS-E-siliculosus-1a_M_contig84:375279..3755311696251006.7556467-CDS-E-siliculosus-1a_M_contig84:375279..375531Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 375280..375531 +
1622936281.7657948-CDS-E-siliculosus-1a_M_contig84:378079..3781541622936281.7657948-CDS-E-siliculosus-1a_M_contig84:378079..378154Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 378080..378154 +
1696251006.7660475-CDS-E-siliculosus-1a_M_contig84:378079..3781541696251006.7660475-CDS-E-siliculosus-1a_M_contig84:378079..378154Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 378080..378154 +
1622936281.7860768-CDS-E-siliculosus-1a_M_contig84:378402..3784801622936281.7860768-CDS-E-siliculosus-1a_M_contig84:378402..378480Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 378403..378480 +
1696251006.7770689-CDS-E-siliculosus-1a_M_contig84:378402..3784801696251006.7770689-CDS-E-siliculosus-1a_M_contig84:378402..378480Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 378403..378480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16539.1

>prot_E-siliculosus-1a_M_contig84.16539.1 ID=prot_E-siliculosus-1a_M_contig84.16539.1|Name=mRNA_E-siliculosus-1a_M_contig84.16539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=135bp
GSAGKGAAAGNVGANQSEVQTAMSANFMQQQQQQQQQPPPPPPPPPPPLP
PGAMGGSTMSPVAAGGGGVFPGAPIQPPVGAVAEVVPLPDLPAITPEGAT
TGGFMSKFQVHFPHTGNDNPARRITSGDHTDSQG*
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mRNA from alignment at E-siliculosus-1a_M_contig84:375280..378480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16539.1 ID=mRNA_E-siliculosus-1a_M_contig84.16539.1|Name=mRNA_E-siliculosus-1a_M_contig84.16539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3201bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:375280..378480+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTCGGCGGGAAAAGGAGCCGCGGCAGGGAACGTCGGAGCAAACCAGAG
TGAGGTACAAACAGCGATGTCCGCCAACTTTATGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCACCGCCGCCACCACCACCACCGCCGCCGCCGCTACCG
CCAGGTGCTATGGGAGGATCCACCATGTCGCCTGTGGCAGCAGGAGGTGG
AGGAGTGTTTCCTGGAGCCCCGATCCAGCCACCAGTGGGAGCAGTAGCAG
AGGTGAGATATGCGATTTGTCCGTGTTGTTGTTGGGGTCAAAATCCTCTG
TGTCTCGCATGCGCGATGTCTTTTGTGCAACGGGTGCAACAAGCAGAGGA
GGTGAGATCCGAGATCTGATCTCATTCTACAACCCCAGATACGAGCGGAA
GCGTGGGAAGAGGTACAACAGACTCGGCAGAAAAGGCTGTGTGAAAAGGT
CGCGGGACAGAGAGCCTCGCCACAGACAGCAGGGTCACACATCCACGTTT
AGCAATCAACCTATTTTTTTTTACTGAGATTGGGGCATAGTCTAGCGGCG
ACTCATGGCTGTTATCCTGCGTATGTTTGTCGCCGAGGATATCGAGCCAC
GAACCAGAGGTGGTTGCTGAGCTGATGATGACTGGACATGGGCAGGGGCG
GGGCAGCAGCAACCGTGCGTGGTGTAGGTTCCATCATATCATGGTCAGAG
ACGGCGTAGACTAAAATCCGTACTCTGTAGACAGAAGCACACTTCGGGGT
GACACACAAGAACGACACAAGGAGCGGCGCACACGGGCAAAAATCGTGTT
GGGCAAGGATTTGCTCCCCGTTGGATCTACAGTATGTGCTGAAGATGTTG
CAGCAAGAGCGGGATGCAATACGTCCCACAGCAATAAGCCTACTATTACT
ATTGCTGTACCACGAACGGTCCCCATCTGTATGTAACATCAGGCAAAAGA
TAGTACGCATTGCAAGTGACGACACTACAGCAGCGCTGCTGCTGTACTCG
CAATTCCAACAACCGAATGTATGTTGGCGGAAGACCACAACTTTCGCAAC
GACATAGACTGTATGTATGGATATACTTTATTAACGTATTTTACCTCGAC
TGCGGCCATAGCTCAGAGGAGAGTCATGAAGCCCTTAGCCACGGCTGGCC
GAAGAGAGTCAACGTTGCGTAGTGTAGGGTTTTTTGACGGTCGTTGCACA
ATCTCTAGACAACTGTAGACTTTTGTCACTTCTGTGCACCCCGACGTACG
CATATCAATTATTCTGTTGGACGAGCTGCCTTGTGACTTACTGAGTTTGT
GGTATCACTGGGCAGCTGGGCAGCGTCTTGTCCGTCAAATTGGAAGCAGA
CTGCTCGGCACGCGTTTACTTCATTATTACTCAGCGTGGCGTCGAACAGC
AGCAAAAAATACTGTGTTCATTACAGCACGTTTACGTTCCAGCATGCCTG
CACACAAGCTTGCGGCGCAGTTACCACCCCTTCCTTCCGACGGGTTGAAA
ATATGGTACGCTCAACCCGTTGTTGTAGCTGGTAAAAGTAGAGTTATGGT
ACTACGTAGTGGACAACTGCTGCTGAAAGCGCGGGAGAAATCTAACTAGC
GTGTTTCCAAATGACAGAGAAGCGCAGCAAGGTAATGATACATACAGCAG
TTCGAAAAGTAATTTATCTACCCTGTTATAGTATATTCTGGGGGGGGATT
GGAAGACGAGTGATGTTCCATTGCACCAGTGCTGTTGCTTCGTTATTTTA
GTCTCTTTTCTCTCGATTTTACGCTCTGCACAGACACTGTCAGTATTTTT
CCATCCCTTCCTGTGGGTGGGGCAATACCTCGAACGGGTATTTTTGTTTT
TCTGCGAACGTATGCATACGTATTTTTCAAAGAATTTTGGCGGTGTTGTA
CGCATCGGTTCTGACCCCGTACGAGAGTCTTGGAAAATTTGTCATTTGTC
ACGTATTTCAAACGTATTCCATCGGAAAAGGGGTCGGGGTTGTTGTTGTT
GTTATTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGGTCTCCACTCA
GTACCTTCTAATGTCCCTGGTCCACCTGACGCGGACGCCTTCCGTGGTCA
CAGGCCAACTGCCCCCCATTTAGGGGGGGGGGGTGCACCTTTCTAAAAAA
TATAGAAATAAAAATGGACACCAGAAAATTTCTCGAAGGCACGATTTGTT
TTCCAACCGAAAAGAGATCAACAGTAAGGCAAACTATAATCGGGATAAAG
AGACGATCGACGACCCCGGTCAAAGGGATGAAATAACGAAAGGCAAAGAA
AGAAAGAAAAGAAAGAGAGGAAGTAAAAAAGACAGAGAGAAAGAAAATCA
ACGAAAGAAATAACGTACAGATTGAAAATACTGTCGACACACCGACTCCC
TTCTGAAGGGCCAGGCAGATGGCTGAATATTCAACTTTTTAAGCGAAATA
CGCTCAACGGTTTTGTTCACGAGAACAGAACAAAATTTGAAGTTTTTTTT
TTGGGTTGGCATATCGTATCGTTGGGCAACCAACCGCCTGCCTGCCTTTG
ACTTTAATTTTTGCCGAAAATCAAGTTTTCGTCATGATCGTCATGATCGC
CATGCCTCGTTTGACTGACGACATCTCTTCTGCGCGCTGTCGTTGATATT
GTGGCGTGTGCCATCTGCAATCGCCCTCCTCTTCCACATGTCGACCCCGG
CAACAACGGCAACGCCACAACCACTGCCGCTGCCACCGTCACCACCAATA
ACAACAACGACAACGACAACTTCCATGGTATTCGGCCCGGCCACCAACAG
GTCGTGCCTCTCCCCGATTTGCCGGCGATCACTCCCGAGGGCGCGACCAC
GGGCGGTTTCATGTCCAAGTTCCAGGTAAAGATGCGACTAGAAAGAGGAG
GGGACTCATGGTTCAGTATTATGCGATGAAGAGAGAGAGACAGATTGAGA
TAGAGAGAGAGACAAAGAGAGAGACAGGGAGACATACAGACAGTGAGACC
AAGAGAGAGAGAGAGAGACAGGGAGGGAGAATAATCTCACCATCCGCGAC
AGTGTACTGCTATCATACCTGAGATGCCGCTGCTGCTGTACCCATTTTTC
TTGGCCGACACGCCCGACGACAGGTGCACTTCCCCCACACGGGCAACGAC
AATCCCGCCCGCCGCATCACCAGCGGAGACCACACGGACTCTCAAGGGTA
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:375280..378480+

>mRNA_E-siliculosus-1a_M_contig84.16539.1 ID=mRNA_E-siliculosus-1a_M_contig84.16539.1|Name=mRNA_E-siliculosus-1a_M_contig84.16539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:375280..378480+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTCGGCGGGAAAAGGAGCCGCGGCAGGGAACGTCGGAGCAAACCAGAG
TGAGGTACAAACAGCGATGTCCGCCAACTTTATGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCACCGCCGCCACCACCACCACCGCCGCCGCCGCTACCG
CCAGGTGCTATGGGAGGATCCACCATGTCGCCTGTGGCAGCAGGAGGTGG
AGGAGTGTTTCCTGGAGCCCCGATCCAGCCACCAGTGGGAGCAGTAGCAG
AGGGTTCGGCGGGAAAAGGAGCCGCGGCAGGGAACGTCGGAGCAAACCAG
AGTGAGGTACAAACAGCGATGTCCGCCAACTTTATGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCACCGCCGCCACCACCACCACCGCCGCCGCCGCTAC
CGCCAGGTGCTATGGGAGGATCCACCATGTCGCCTGTGGCAGCAGGAGGT
GGAGGAGTGTTTCCTGGAGCCCCGATCCAGCCACCAGTGGGAGCAGTAGC
AGAGGTCGTGCCTCTCCCCGATTTGCCGGCGATCACTCCCGAGGGCGCGA
CCACGGGCGGTTTCATGTCCAAGTTCCAGGTCGTGCCTCTCCCCGATTTG
CCGGCGATCACTCCCGAGGGCGCGACCACGGGCGGTTTCATGTCCAAGTT
CCAGGTGCACTTCCCCCACACGGGCAACGACAATCCCGCCCGCCGCATCA
CCAGCGGAGACCACACGGACTCTCAAGGGTAAGTGCACTTCCCCCACACG
GGCAACGACAATCCCGCCCGCCGCATCACCAGCGGAGACCACACGGACTC
TCAAGGGTAA
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