mRNA_E-siliculosus-1a_M_contig84.16532.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16532.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16532.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:302699..302874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size102
Model size157
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 orthologEc-15_001510.1
Ec32 ortholog descriptionexpressed unknown protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16532.1prot_E-siliculosus-1a_M_contig84.16532.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 302699..302819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936281.6365106-CDS-E-siliculosus-1a_M_contig84:302698..3027771622936281.6365106-CDS-E-siliculosus-1a_M_contig84:302698..302777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 302699..302777 +
1696251006.724202-CDS-E-siliculosus-1a_M_contig84:302698..3027771696251006.724202-CDS-E-siliculosus-1a_M_contig84:302698..302777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 302699..302777 +
1622936281.6550112-CDS-E-siliculosus-1a_M_contig84:302796..3028191622936281.6550112-CDS-E-siliculosus-1a_M_contig84:302796..302819Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 302797..302819 +
1696251006.73551-CDS-E-siliculosus-1a_M_contig84:302796..3028191696251006.73551-CDS-E-siliculosus-1a_M_contig84:302796..302819Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 302797..302819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936281.6725905-UTR-E-siliculosus-1a_M_contig84:302819..3028741622936281.6725905-UTR-E-siliculosus-1a_M_contig84:302819..302874Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 302820..302874 +
1696251006.7457802-UTR-E-siliculosus-1a_M_contig84:302819..3028741696251006.7457802-UTR-E-siliculosus-1a_M_contig84:302819..302874Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 302820..302874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16532.1

>prot_E-siliculosus-1a_M_contig84.16532.1 ID=prot_E-siliculosus-1a_M_contig84.16532.1|Name=mRNA_E-siliculosus-1a_M_contig84.16532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=34bp
MWSGWLTPVFGGRPYLEEARSFARDSYSCVRSS*
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mRNA from alignment at E-siliculosus-1a_M_contig84:302699..302874+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16532.1 ID=mRNA_E-siliculosus-1a_M_contig84.16532.1|Name=mRNA_E-siliculosus-1a_M_contig84.16532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=176bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:302699..302874+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGTCGGGTTGGTTGACACCGGTATTTGGGGGCAGACCATACTTGGA
AGAGGCGCGCTCGTTCGCGCGAGATTCTTGTGTTCGCGTTCCCGCGAGAT
TCTTGTGTTCGAAGTAGCTAGCCACCCGTGGCAGCAGGACTCGAGGAAAA
TGTATCGAAGTACTTACGATGATGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:302699..302874+

>mRNA_E-siliculosus-1a_M_contig84.16532.1 ID=mRNA_E-siliculosus-1a_M_contig84.16532.1|Name=mRNA_E-siliculosus-1a_M_contig84.16532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=204bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:302699..302874+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGTCGGGTTGGTTGACACCGGTATTTGGGGGCAGACCATACTTGGA
AGAGGCGCGCTCGTTCGCGCGAGATTCTTATGTGGTCGGGTTGGTTGACA
CCGGTATTTGGGGGCAGACCATACTTGGAAGAGGCGCGCTCGTTCGCGCG
AGATTCTTATTCTTGTGTTCGAAGTAGCTAGATTCTTGTGTTCGAAGTAG
CTAG
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