mRNA_E-siliculosus-1a_M_contig83.16508.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16508.1
Unique NamemRNA_E-siliculosus-1a_M_contig83.16508.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:643465..643830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size309
Model size367
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936263.3542688-UTR-E-siliculosus-1a_M_contig83:643464..6435211622936263.3542688-UTR-E-siliculosus-1a_M_contig83:643464..643521Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 643465..643521 +
1696250997.9387796-UTR-E-siliculosus-1a_M_contig83:643464..6435211696250997.9387796-UTR-E-siliculosus-1a_M_contig83:643464..643521Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 643465..643521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936263.3677516-CDS-E-siliculosus-1a_M_contig83:643521..6438301622936263.3677516-CDS-E-siliculosus-1a_M_contig83:643521..643830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 643522..643830 +
1696250997.956895-CDS-E-siliculosus-1a_M_contig83:643521..6438301696250997.956895-CDS-E-siliculosus-1a_M_contig83:643521..643830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 643522..643830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16508.1prot_E-siliculosus-1a_M_contig83.16508.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig83 643522..643830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig83.16508.1

>prot_E-siliculosus-1a_M_contig83.16508.1 ID=prot_E-siliculosus-1a_M_contig83.16508.1|Name=mRNA_E-siliculosus-1a_M_contig83.16508.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp
MSQTRRIVRTCNQAYRNSTEDVLTMVLNFVPFRMRPNQGRVWGSSALSRH
VYWTAVKGRISHTNRFPFTAVQQVFTIRDYFQQEGERESGVLAAADVVVL
SFN
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mRNA from alignment at E-siliculosus-1a_M_contig83:643465..643830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig83.16508.1 ID=mRNA_E-siliculosus-1a_M_contig83.16508.1|Name=mRNA_E-siliculosus-1a_M_contig83.16508.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:643465..643830+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCTGCCCCACTCTCCTGCGAAAATATATGGTGTTTCGCAATACATAGAC
GGCAAACATGTCCCAAACCCGTAGAATAGTCAGGACATGCAACCAAGCAT
ATAGGAACAGCACCGAGGACGTACTTACCATGGTACTAAATTTCGTACCG
TTTCGTATGCGGCCGAATCAGGGGCGGGTTTGGGGTAGCTCGGCTCTCAG
CAGGCACGTGTATTGGACAGCAGTGAAAGGTAGAATATCGCACACAAACC
GCTTCCCTTTCACTGCCGTGCAGCAGGTTTTCACAATCAGGGACTACTTT
CAGCAAGAAGGCGAGCGAGAGAGCGGCGTATTAGCTGCTGCTGATGTTGT
CGTTTTGTCTTTCAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:643465..643830+

>mRNA_E-siliculosus-1a_M_contig83.16508.1 ID=mRNA_E-siliculosus-1a_M_contig83.16508.1|Name=mRNA_E-siliculosus-1a_M_contig83.16508.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:643465..643830+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCCAAACCCGTAGAATAGTCAGGACATGCAACCAAGCATATAGGAA
CAGCACCGAGGACGTACTTACCATGGTACTAAATTTCGTACCGTTTCGTA
TGCGGCCGAATCAGGGGCGGGTTTGGGGTAGCTCGGCTCTCAGCAGGCAC
GTGTATTGGACAGCAGTGAAAGGTAGAATATCGCACACAAACCGCTTCCC
TTTCACTGCCGTGCAGCAGGTTTTCACAATCAGGGACTACTTTCAGCAAG
AAGGCGAGCGAGAGAGCGGCGTATTAGCTGCTGCTGATGTTGTCGTTTTG
TCTTTCAACATGTCCCAAACCCGTAGAATAGTCAGGACATGCAACCAAGC
ATATAGGAACAGCACCGAGGACGTACTTACCATGGTACTAAATTTCGTAC
CGTTTCGTATGCGGCCGAATCAGGGGCGGGTTTGGGGTAGCTCGGCTCTC
AGCAGGCACGTGTATTGGACAGCAGTGAAAGGTAGAATATCGCACACAAA
CCGCTTCCCTTTCACTGCCGTGCAGCAGGTTTTCACAATCAGGGACTACT
TTCAGCAAGAAGGCGAGCGAGAGAGCGGCGTATTAGCTGCTGCTGATGTT
GTCGTTTTGTCTTTCAAC
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