mRNA_E-siliculosus-1a_M_contig83.16506.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16506.1
Unique NamemRNA_E-siliculosus-1a_M_contig83.16506.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.750e-41
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAGATSA 219
            MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTA+AREAVGYNRNVFV G+PQGKLPVA+LKEAGATSA
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVASLKEAGATSA 73
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 6.790e-19
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAG 207
            TTFWR+AGM+YL+Y +KA   MR  LKEPA++ AMA+EA GYN  V+  GK   KLPVAN+++AG
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAGKQGPKLPVANIQQAG 71
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.890e-19
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAG 207
            ATTFWR+AG++YLEYA+  TT +R  LKEP RS AM R AV YNR VF DG    K PV +L +AG
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAKKPVKSLADAG 71
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 81.3 bits (199), Expect = 4.470e-18
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    4 SQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAGATS 216
            S  TTFWR+AGM+YL+Y +KA T MRGALKEPA+  AM +EA  Y  + + DGK   K+PV  L ++GATS
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDGKQSPKVPVDVLAQSGATS 130
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.450e-11
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAG 207
            AT FWR+AGM+YL+Y ++A   +R ALKEP +S   A+    Y  + +VDG    K  + +L +AG
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSKTEITSLSQAG 70
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.920e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVF---VDGKPQG--KLPVANLK 198
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP R+  MA+E + + R  +   + G+P G  K+ V +LK
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: I0YYI8_COCSC (Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YYI8_COCSC)

HSP 1 Score: 60.1 bits (144), Expect = 2.620e-10
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAGATSA 219
            A+++WR+AGM+YL+Y++    ++R +LKEP ++ A  REAV +   V+ DGKP+ K  + +L +AG   A
Sbjct:    7 ASSYWRVAGMSYLKYSNLCADMLRSSLKEPMKTKAKLREAVYFRAAVWKDGKPE-KQVITDLTDAGLEQA 75
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A444ENQ8_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444ENQ8_ENSVE)

HSP 1 Score: 58.5 bits (140), Expect = 8.330e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQ 171
            A  FWR AGMTY+ Y++   +++RG LKEP RS A+ARE V +  + + DGKP+
Sbjct:    7 AVPFWRAAGMTYITYSNICASLVRGCLKEPHRSEAVAREKVHFTVSKWADGKPE 60
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.800e-9
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAG 207
            +TT+WR+AGMTYL+Y ++A   +R  LKEP +S  +A+    YN + +  G    K  ++ L +AG
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAKKEISALGQAG 70
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BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Match: A0A2V0NKU9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKU9_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.890e-9
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   19 FWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNVFVDGKPQGKLPVANLKEAGATS 216
            FWR AGM+YL+YA+    +MRG +KEP +S A+AR+++ +  + F DGK     PV    EA  T+
Sbjct:    9 FWRAAGMSYLKYANICADMMRGVMKEPFKSKALARQSIYFRSSKFADGKQS--TPVITDLEAVPTT 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FZG1_ECTSI3.750e-4194.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5K8B7_FISSO6.790e-1960.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835YQS1_9STRA9.890e-1960.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G8W9_PHATC4.470e-1856.34Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A1E7ER17_9STRA5.450e-1142.42Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
W7U8A3_9STRA7.920e-1148.53Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
I0YYI8_COCSC2.620e-1041.43Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41... [more]
A0A444ENQ8_ENSVE8.330e-1050.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A448YV42_9STRA1.800e-939.39Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2V0NKU9_9CHLO2.890e-943.94Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:637805..640260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size222
Model size222
Exons3
Ec32 orthologEc-19_003180.1
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelChlorophyta
COG Functional cat.C
EggNOG OGs34IT3@3041,37W9H@33090,KOG3495@1,KOG3495@2759
EggNOG free text desc.Mitochondrial ATP synthase epsilon chain
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0098796,GO:0098798,GO:0098800
KEGG ModuleM00158
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG TC3.A.2.1
KEGG koko:K02135
Seed eggNOG ortholog248742.XP_005648001.1
Seed ortholog evalue2.3e-07
Seed ortholog score61.2
Taxonomic scopeViridiplantae
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16506.1prot_E-siliculosus-1a_M_contig83.16506.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig83 637805..640260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936279.1124642-CDS-E-siliculosus-1a_M_contig83:637804..6378551622936279.1124642-CDS-E-siliculosus-1a_M_contig83:637804..637855Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 637805..637855 +
1696251005.5707362-CDS-E-siliculosus-1a_M_contig83:637804..6378551696251005.5707362-CDS-E-siliculosus-1a_M_contig83:637804..637855Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 637805..637855 +
1622936279.1354578-CDS-E-siliculosus-1a_M_contig83:639120..6392471622936279.1354578-CDS-E-siliculosus-1a_M_contig83:639120..639247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 639121..639247 +
1696251005.5853848-CDS-E-siliculosus-1a_M_contig83:639120..6392471696251005.5853848-CDS-E-siliculosus-1a_M_contig83:639120..639247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 639121..639247 +
1622936279.1546574-CDS-E-siliculosus-1a_M_contig83:640216..6402601622936279.1546574-CDS-E-siliculosus-1a_M_contig83:640216..640260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 640217..640260 +
1696251005.5985844-CDS-E-siliculosus-1a_M_contig83:640216..6402601696251005.5985844-CDS-E-siliculosus-1a_M_contig83:640216..640260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 640217..640260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig83.16506.1

>prot_E-siliculosus-1a_M_contig83.16506.1 ID=prot_E-siliculosus-1a_M_contig83.16506.1|Name=mRNA_E-siliculosus-1a_M_contig83.16506.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=74bp
MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTAMAREAVGYNRNV
FVDGKPQGKLPVANLKEAGATSA*
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mRNA from alignment at E-siliculosus-1a_M_contig83:637805..640260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig83.16506.1 ID=mRNA_E-siliculosus-1a_M_contig83.16506.1|Name=mRNA_E-siliculosus-1a_M_contig83.16506.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2456bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:637805..640260+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTCAGGCGACGACTTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GGTGAGAAGACCAAAGCAAGCAGAGAAAGCTTGATCGAAACGCGCAAGAA
CAAGAACGTTTCTGCACGCACGGAGCAGTGTCGCACAGAACTCGCCGCAC
CCACTAAATCACAGGGCAGCAGCATGGCGGGTGGGGGCCGAACAGGAGAG
GCGGCGACTCTCAAATGGCGCACCAAGAGAAAGAACTCGTGGTTGCATCG
GTGTTGCGCCTATCTCTCTCTAGTATGTACCCGCGAATACCCCCTTATCA
GCTTGGTAGTCGTGCATCACTGCGAACCTGATGTTGCAATTTCTGCCCTC
TCGATGTAGTAGGCATTTTCCCGATCTGTTGTCAATCCTTGATCATCGGT
GGTCTTGCAAGCTGTTCGTGGTATGGGTTACCCAAGAGAGCCTAGACCCG
TTCCGGATCGTGTCGGGCCAAAGGCAACACACTCCCAATCGCACCCGCCT
CCTGCTTCTAAACGCAACAAGCGTGCCTCTGCTTTGCATCTTGCACGAAG
CCTCTCTTTCCGTGTACATTCCGTGTGTTCTGCTCTGCCAGCGGCCAGCA
GCGGTCGACGAAACCTACAGCAGTCTGCCGTAGTAGCCGTCATGAAACTG
CGTGAGATGGATTTTTGCTGCTCATCGGGTGTGGCTATGACTGGACAGTG
TTGTGCCGTCCATGTCCAGAGGTGGATTCAAGAGGATTCCTACACACATG
CACACACTGAGTTATTTGCGACAGGAAATAGTATAGTGTTTCCACCCAAA
CCAGCGGGGCGTCAACTTCGGTATATAGGTATTAGGGGGGAGAGCGATCC
GAACCCTTCTTCCCCTTCTTCCCCTTCCTTGGCGTTTACACGCTCTCCCT
TCGTCCAAGGCCAGCCGTACGAACAGACTTGGCACCCGGAACAGAAACGA
CTCGAGACATGAAACCGTTTACTGCTGTACATGTGCATCTAGACGCCACC
CTCCTCCCCACCTCCTCGGACCTCTCAATTCGATTGAGTAAACATAAGTA
CTTCTGGATAAAGCATACAATTGGGGGAAGGTAGGGTTTAGGGAAAAGGG
TCTGCGTCTCCCCTCCCTGTTTGGTGTCCTCATAAACTTATTAATCTCGC
GAAGGGGGTCCACATCCCTCCGTGTGCCTCATCACACTAACGCCCAACTC
TACCCCCCCCAGACCTCAACCTCCCCTATCTCGATCAGAGCATCAACTAT
TATATACACCATGCCAAGTCTTCCTCTACGCGACACCGTTGCCTCGATTT
TTTTGTCCCGCCGCAGTACGCCAGCAAGGCAACCACGGTCATGCGCGGCG
CCCTCAAGGAGCCCGCCCGCAGCACGGCCATGGCGCGGGAAGCGGTGGGG
TACAACCGCAACGTCTTCGTCGACGGCAAGCCGCAGGGCAAACGTGAGTG
TTTCATTTCCTTTTTCTTTTTCTTAGAATATCACGACAAATTCAGCTCTG
CCCATACACAAGGGTCTAGGATAAAATGGTACTAAATTGTAGCGTTTACC
GGGTGCTACCTGTGCTGCTACGATTCCCAGTACAACGATATCTCCCCTGT
GGGTAGCAGGCTCCACAAGATAGCTCGGTGGCCATCTTGTGCATCGGACT
ATCTGTGTGTTATGCCGGGAAGGTATAGAATATATTTTTCGTGTGCGTCG
TGAAGCGCGCGCGGGGGGTGGTACTCATAGTCGTGCATGCCGTAGTCGTT
AGACCATTGACCTCGCATCCCTACAAGGCCGGGACGGAGCACGCCGGGTT
CTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATAT
TCGGCGAGTCGCATAGAGGGTGCGCTGCATCCTGCGAAGCGGGTGGGGCG
GGGCATACTCATGTTTTGCATCCCTTAGCGGTTAGACCATGAAGGCGACG
GCGGGGTGGAGAGAGGAGGGAGATCGACAAAGACTGGGAAGAGAAATCGG
GCATGAGTTGCAAGCACGATATTTCCTTGCAGATGTCGTACAGAACGAAT
GGCATGCCCGGCCCACGTATCTCAAACTCGAAACTCTTGTGCATATACTA
CCCCCATCATCGGGCTCACGGGAAAGTTGCTGTGAGACGACGGGGGGTGC
CTCGGTACGTACCTTTGCAATGCACTCGGTAGAACCCGACTGCTACCGTT
TTTTTCATTCGCAGAACGACCCGCCCAACTTGTTGCAACGGAATGAGCAG
GAGGAGGAGATTCTGACCGGCCCGCGAACCTCCCGCGAACGTTTTCTCTT
GAATGACTTTCGTTCGACCTCGATTGTTGTGTTGCTCTGATTCCACCATT
TACTTGTGTGTCTATTCTTCTGATTTTACGTTGGTTTGATTCGCTCGTCT
GTCTCTCCGCAGTGCCGGTGGCCAATTTGAAGGAGGCTGGGGCAACCTCG
GCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:637805..640260+

>mRNA_E-siliculosus-1a_M_contig83.16506.1 ID=mRNA_E-siliculosus-1a_M_contig83.16506.1|Name=mRNA_E-siliculosus-1a_M_contig83.16506.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:637805..640260+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTCAGGCGACGACTTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GATGTCTCAGGCGACGACTTTCTGGCGGTTGGCGGGCATGACGTACCTTG
AGTACGCCAGCAAGGCAACCACGGTCATGCGCGGCGCCCTCAAGGAGCCC
GCCCGCAGCACGGCCATGGCGCGGGAAGCGGTGGGGTACAACCGCAACGT
CTTCGTCGACGGCAAGCCGCAGGGCAAACTACGCCAGCAAGGCAACCACG
GTCATGCGCGGCGCCCTCAAGGAGCCCGCCCGCAGCACGGCCATGGCGCG
GGAAGCGGTGGGGTACAACCGCAACGTCTTCGTCGACGGCAAGCCGCAGG
GCAAACTGCCGGTGGCCAATTTGAAGGAGGCTGGGGCAACCTCGGCGTAG
TGCCGGTGGCCAATTTGAAGGAGGCTGGGGCAACCTCGGCGTAG
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