mRNA_E-siliculosus-1a_M_contig83.16488.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16488.1
Unique NamemRNA_E-siliculosus-1a_M_contig83.16488.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A6H5KUR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR9_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 1.020e-184
Identity = 340/515 (66.02%), Postives = 342/515 (66.41%), Query Frame = 1 
Query:    1 MRAAAVQWDLSSMGPEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDVSSAGSQAGR--------------------------------------------------------------------------------------------------------------------------------------------------------------DPTRELLEYSSASVEDEGSAAGAMLASAHMSQTPEKRVSTASSESCRAGAPEVVELFPADAPSSDSAVAAPSSPELTLYGNPKDAATTGQEVSPADAAVSKGHAVLVRGGGGDAACSKGDHHHDHHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAIGLAEGWAGIGH 1071
            MRAAAVQWDLSSMG EELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDVSSAGSQAGR                                                                                                                                                              D TRELLEYSSASVEDEGSAA AMLASA +SQTPEKRVSTASSESCR GAPEV ELFP  A SSDSAVAAPSSPELTLYGNPKDAAT GQE SPADAAVSKGHAVLVRGG GDAAC KGDHH  HHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQG+LEVAALAAGAAGVVAIGLAEGWAGIGH
Sbjct:    1 MRAAAVQWDLSSMGLEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDVSSAGSQAGRIQRLLLAFAGGGLMAEAALHLLPHLFLPKHDHDDHGHESLADACTLIAVGFLAAFAIDRFVGVRQQRQHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDSGEAVPAGETTDANSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSTRELLEYSSASVEDEGSAAEAMLASACISQTPEKRVSTASSESCRPGAPEVAELFPEVASSSDSAVAAPSSPELTLYGNPKDAAT-GQEESPADAAVSKGHAVLVRGGRGDAACIKGDHHQYHHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGVLEVAALAAGAAGVVAIGLAEGWAGIGH 514
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: D7G0G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G9_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 2.020e-158
Identity = 254/259 (98.07%), Postives = 254/259 (98.07%), Query Frame = 1 
Query:    1 MRAAAVQWDLSSMGPEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDVSSAGSQAGRDPTRELLEYSSASVEDEGSAAGAMLASAHMSQTPEKRVSTASSESCRAGAPEVVELFPADAPSSDSAVAAPSSPELTLYGNPKDAATTGQEVSPADAAVSKGHAVLVRGGGGDAACSKGDHHHDHHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGM 777
            MRAAAVQWDLSSMGPEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDV SAGSQAGRDPTRELLEYSSASVEDEGSAAGAMLASAHMSQTPEKRVSTASSESCRAGAPEVVELFPA APSSDSAVA PSSPELTLYGNPKDAATTGQE SPADAAVSKGHAVLVRGGGGDAACSKGDHH DHHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGM
Sbjct:    1 MRAAAVQWDLSSMGPEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPTSKVDVRDVCSAGSQAGRDPTRELLEYSSASVEDEGSAAGAMLASAHMSQTPEKRVSTASSESCRAGAPEVVELFPAVAPSSDSAVAVPSSPELTLYGNPKDAATTGQEGSPADAAVSKGHAVLVRGGGGDAACSKGDHHQDHHDHGPADAGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGM 259
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A7L2X3S5_PANHA (S39A7 protein (Fragment) n=7 Tax=Neognathae TaxID=8825 RepID=A0A7L2X3S5_PANHA)

HSP 1 Score: 88.2 bits (217), Expect = 9.800e-17
Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAI 1038
            Y+ LA D  HN  DG+ IGA++ + G  +G  TA   L+HE+ HE+GD A LVQ G SKH A+ +Q  TA G   G A SL A    E  +   L  +AG   ++ +  V+  +L       GP+Q LL+V  L AG A +VAI
Sbjct:    6 YLNLAADVAHNFTDGLAIGASF-LAGPGLGMVTAVTVLLHELPHEVGDFAILVQSGCSKHKAMRLQLVTALGAVAGAACSLLAEGAGEAAMLGVLPFTAGGFIYVGTVSVIPELL----RDAGPLQSLLQVLGLLAGVAMMVAI 144
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: UPI000EA997BA (zinc transporter SLC39A7-like n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=UPI000EA997BA)

HSP 1 Score: 86.7 bits (213), Expect = 3.470e-16
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAG 1017
            Y+ LA DF HN  DG+ +GA++ V G AVG  T    L+HEV HE+GD A LVQ G +K  A+ +Q  TA G   G   SL A    E   A  L  +AG   ++A+  V+  +L       GPVQ LL+V +L  G
Sbjct:    6 YLNLAADFAHNFTDGLALGASF-VAGSAVGAVTTLTVLLHEVPHEVGDFAILVQSGCTKRKAMKLQLVTALGALAGTVCSLLAEGVGEAATAWILPFTAGGFIYVATVSVIPELL----QEAGPVQSLLQVLSLLGG 137
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A401PSY5_SCYTO (Uncharacterized protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PSY5_SCYTO)

HSP 1 Score: 89.4 bits (220), Expect = 3.710e-16
Identity = 59/137 (43.07%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAG 1017
            Y+ LA DF HN  DG+ IGA++ V  + VG  T    L+HE+ HE+GD A LVQ G SKH A+ +Q  TA G   G A SL A    E   A  L  +AG   ++A+  V+  +L    D   P+Q LLE+AAL  G
Sbjct:   99 YLNLAADFTHNFTDGLAIGASFLVSTN-VGVVTTITILLHEIPHEVGDFAILVQSGCSKHKAMMLQLITALGALAGTACSLMAEGIGEAATAWILPFTAGGFIYIATVSVIPELL----DDSKPLQSLLEIAALLVG 230
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A401T4I6_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401T4I6_CHIPU)

HSP 1 Score: 87.8 bits (216), Expect = 1.040e-15
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAG 1017
            Y+ LA DF HN  DG+ IGA++ V  + VG  T    L+HE+ HEIGD A LVQ G SKH A+ +Q  TA G   G A SL A    E   A  L  +AG   ++A+  V+  +L    D   P+Q LLE+ AL  G
Sbjct:   90 YLNLAADFTHNFTDGLAIGASFLVSTN-VGIITTITILLHEIPHEIGDFAILVQSGCSKHKAMMLQLITAVGALAGTACSLMAEGIGEAATAWILPFTAGGFVYIATVSVIPELL----DDSKPLQSLLEIVALLVG 221
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A852IYF2_9PICI (S39A7 protein (Fragment) n=1 Tax=Tricholaema leucomelas TaxID=240729 RepID=A0A852IYF2_9PICI)

HSP 1 Score: 84.3 bits (207), Expect = 2.160e-15
Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1 
Query:  598 AGAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAI 1038
            A  Y+ LA D  HN  DG+ +GA++ +GG  +G  TA   L+HE+ HE+GD A L+Q G +K  A+ +Q  TA G   G + SL AG   E   +  L  +AG   +L +   L  +L  P+    P+Q LL++ AL  G A ++AI
Sbjct:    3 ASGYLNLAADLAHNFTDGLALGASF-LGGPGLGLVTAGTVLLHELPHEVGDFALLLQAGCTKRQAMRLQLLTALGAVAGASCSLLAGGAAEVAASWVLPFTAGGFIYLGTVAALPELLRDPS----PLQALLQLMALLGGVAMMLAI 144
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: UPI00129D9904 (zinc transporter SLC39A7-like n=1 Tax=Phasianus colchicus TaxID=9054 RepID=UPI00129D9904)

HSP 1 Score: 84.3 bits (207), Expect = 2.220e-15
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAAC----LALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAI 1038
            Y+ LA D  HN+ DG+ IGA++ V G AVG  TA   L+HEV HE+GD+A LVQ G SK  A+ +Q  TA G   G   SL      EG+ AA     L  +AG   ++ +  VL  +L    DV  P+Q LL++AAL AG A + AI
Sbjct:    6 YLNLAADVAHNVTDGLAIGASF-VAGPAVGTVTALTVLLHEVPHEVGDLAILVQSGCSKKQAMRLQLLTALGAVGGAGCSL----LAEGVGAAATRWILPFTAGGFIYVGTVAVLPQLLR--EDV--PMQSLLQLAALLAGVAMMAAI 144
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A6J1W4C1_9SAUR (zinc transporter SLC39A7 n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1W4C1_9SAUR)

HSP 1 Score: 86.3 bits (212), Expect = 2.840e-15
Identity = 57/137 (41.61%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAG 1017
            Y+ LA DF HN  DG+ +GA++ V G  VG  T    L+HEV HE+GD A LVQ G +K  A+ +Q  TA G   G   SL A    E   A  L  +AG   ++A+  V+  +L       GPVQ LLEV +L  G
Sbjct:   80 YLNLAADFAHNFTDGLALGASF-VAGSTVGAVTTLTVLLHEVPHEVGDFAILVQSGCTKRKAMKLQLVTALGALAGTVCSLLAEGVGEAATAWILPFTAGGFIYVATVSVIPELL----QESGPVQSLLEVLSLLGG 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Match: A0A670HR43_PODMU (Solute carrier family 39 member 7 n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670HR43_PODMU)

HSP 1 Score: 90.1 bits (222), Expect = 3.070e-15
Identity = 62/144 (43.06%), Postives = 78/144 (54.17%), Query Frame = 1 
Query:  607 YVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGDVATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAI 1038
            Y+ LA DF HN  DG+ +GA++  GG  VG  T    L+HEV HE+GD A LVQ G SK  A+ +Q  TA G   G   SL A    E   A  L  +AG   ++A+  V+  +L       GPVQ LLEV  L AG A +V I
Sbjct:  297 YLNLAADFAHNFTDGLALGASFLAGG-TVGAVTTLTVLLHEVPHEVGDFAILVQSGCSKKKAMKLQLVTALGALAGTVCSLLAEGVGEAATAWILPFTAGGFIYVATVSVIPELL----QDSGPVQSLLEVLGLVAGVAMMVFI 435
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUR9_9PHAE1.020e-18466.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G9_ECTSI2.020e-15898.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7L2X3S5_PANHA9.800e-1740.97S39A7 protein (Fragment) n=7 Tax=Neognathae TaxID=... [more]
UPI000EA997BA3.470e-1641.61zinc transporter SLC39A7-like n=1 Tax=Pseudonaja t... [more]
A0A401PSY5_SCYTO3.710e-1643.07Uncharacterized protein n=1 Tax=Scyliorhinus toraz... [more]
A0A401T4I6_CHIPU1.040e-1543.07Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
A0A852IYF2_9PICI2.160e-1538.10S39A7 protein (Fragment) n=1 Tax=Tricholaema leuco... [more]
UPI00129D99042.220e-1543.92zinc transporter SLC39A7-like n=1 Tax=Phasianus co... [more]
A0A6J1W4C1_9SAUR2.840e-1541.61zinc transporter SLC39A7 n=1 Tax=Notechis scutatus... [more]
A0A670HR43_PODMU3.070e-1543.06Solute carrier family 39 member 7 n=1 Tax=Podarcis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:428298..435416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1074
Model size2593
Exons6
Ec32 orthologEc-19_003270.1
Ec32 ortholog descriptionZinc/iron permease
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.P
EggNOG OGsCOG0428@1,KOG2693@2759
EggNOG free text desc.cellular zinc ion homeostasis
Seed eggNOG ortholog2880.D7G0G9
Seed ortholog evalue3.8e-132
Seed ortholog score478.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936274.202484-UTR-E-siliculosus-1a_M_contig83:428297..4298161622936274.202484-UTR-E-siliculosus-1a_M_contig83:428297..429816Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 428298..429816 -
1696251003.0254858-UTR-E-siliculosus-1a_M_contig83:428297..4298161696251003.0254858-UTR-E-siliculosus-1a_M_contig83:428297..429816Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 428298..429816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936274.2455873-CDS-E-siliculosus-1a_M_contig83:429816..4301111622936274.2455873-CDS-E-siliculosus-1a_M_contig83:429816..430111Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 429817..430111 -
1696251003.045887-CDS-E-siliculosus-1a_M_contig83:429816..4301111696251003.045887-CDS-E-siliculosus-1a_M_contig83:429816..430111Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 429817..430111 -
1622936274.2586203-CDS-E-siliculosus-1a_M_contig83:431163..4312861622936274.2586203-CDS-E-siliculosus-1a_M_contig83:431163..431286Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431164..431286 -
1696251003.0581517-CDS-E-siliculosus-1a_M_contig83:431163..4312861696251003.0581517-CDS-E-siliculosus-1a_M_contig83:431163..431286Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431164..431286 -
1622936274.2753296-CDS-E-siliculosus-1a_M_contig83:431588..4317571622936274.2753296-CDS-E-siliculosus-1a_M_contig83:431588..431757Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431589..431757 -
1696251003.073015-CDS-E-siliculosus-1a_M_contig83:431588..4317571696251003.073015-CDS-E-siliculosus-1a_M_contig83:431588..431757Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431589..431757 -
1622936274.2936258-CDS-E-siliculosus-1a_M_contig83:431936..4322221622936274.2936258-CDS-E-siliculosus-1a_M_contig83:431936..432222Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431937..432222 -
1696251003.0863755-CDS-E-siliculosus-1a_M_contig83:431936..4322221696251003.0863755-CDS-E-siliculosus-1a_M_contig83:431936..432222Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 431937..432222 -
1622936274.308581-CDS-E-siliculosus-1a_M_contig83:433269..4333831622936274.308581-CDS-E-siliculosus-1a_M_contig83:433269..433383Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 433270..433383 -
1696251003.0998445-CDS-E-siliculosus-1a_M_contig83:433269..4333831696251003.0998445-CDS-E-siliculosus-1a_M_contig83:433269..433383Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 433270..433383 -
1622936274.3280547-CDS-E-siliculosus-1a_M_contig83:435329..4354161622936274.3280547-CDS-E-siliculosus-1a_M_contig83:435329..435416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 435330..435416 -
1696251003.1099365-CDS-E-siliculosus-1a_M_contig83:435329..4354161696251003.1099365-CDS-E-siliculosus-1a_M_contig83:435329..435416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 435330..435416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16488.1prot_E-siliculosus-1a_M_contig83.16488.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig83 429817..435416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig83.16488.1

>prot_E-siliculosus-1a_M_contig83.16488.1 ID=prot_E-siliculosus-1a_M_contig83.16488.1|Name=mRNA_E-siliculosus-1a_M_contig83.16488.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=358bp
MRAAAVQWDLSSMGPEELLSEGTIFFLAKVLAAASVVAFGPALVLEYVPT
SKVDVRDVSSAGSQAGRDPTRELLEYSSASVEDEGSAAGAMLASAHMSQT
PEKRVSTASSESCRAGAPEVVELFPADAPSSDSAVAAPSSPELTLYGNPK
DAATTGQEVSPADAAVSKGHAVLVRGGGGDAACSKGDHHHDHHDHGPADA
GAYVTLAVDFLHNLIDGIGIGAAYAVGGDAVGHATAALKLVHEVQHEIGD
VATLVQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALS
AGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAIGLAE
GWAGIGH*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig83:428298..435416-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig83.16488.1 ID=mRNA_E-siliculosus-1a_M_contig83.16488.1|Name=mRNA_E-siliculosus-1a_M_contig83.16488.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7119bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:428298..435416- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTGCCGCAGCGGTGCAATGGGACCTATCTAGCATGGGACCGGAAGA
GCTGCTTTCTGAGGGCACGATCTTCTTTCTGGCGAAGGTGAGTTGAGGGA
AGTTTTGAAATTCGTCTCTTGCGTACACAGCAGCGTCTGCTGTAGATTTC
GTCATCATTGCTCATGTTTTGCCCTCCCTCTCGCTGCTGGACAACCCCCC
GCGACATACCGACGGGCCTTGGAAAGGCATGCATGCCCCTGACGAAAGAC
GGCTACGATTCTACAGCCTAGGCTGGACTCTTTGCAGCACACGGCGACAG
AAACCTCAGTGCGACAAGTGTGAGAAATCCGTGAGGTGCTGGACCTGGTA
CGGACCAAATTTTGAAACACGTCAACCCCCATGCGGACGGCGTCGTATGT
ACCTGTACCATGCTGCGACGCGCCTACGCTCTGTCTTTAGTTACACGGGC
CTACGACACCGCTCGCTTCGAACAGGCTCCTTGCTGGTGTTCGCGTTGGC
AAGGAGCATGCTCAATTGCCTAGGCTGGACTTCAGCGCGGCGCTACAGCA
GCTCGATGTCCATGACACGTTCGCATACGTCTGCTGCCCGAAATGCAACT
ATTATTACTTCGCCATTACTGGGGGGGGTGGCGGCATGTTGTTTTTCTTC
CGTTCTTGCACCTGCTGTCTGTGTTGTTGGTCCTGTCATCTGTTGCCGCA
CAGAGGAGCTGTTGGTGTATGTTTTTCGATGGAGTAGTACTGTAGACACA
CGACGGATAGTAGGTGTGTTCGTCCTCTATCTGGGCGCTGGAACGGTATG
TACCCCAGTACAAGATGTACTATTATAATAGTAGAAGTCAAGTACAGTAA
TATCTGGGCGCTGGAACGGTAATCTAAGCCAATGATACCTCTGTAACTAG
TGAAATACGTGCCAGCTGGGGCCATACATTGACACTTGGAGTTTTGTTTT
TCTCCGCTTTCCGTCTATTTAGCGGTGCTGTCTTGCCACCAAACTTTCAA
CCCGAGAAGGGTTCATTCAAGACTTCCTTCCTTCGCGCCTGCCTCTGGTT
TTGTCCACAACGCATACTCTTAGTCACTCTTAGACCCCACCGCTCCGCCC
TTCGTCCTCACCGTGCTTCTTGCCATTACTTTCAACGCGAGAAGGGTTCA
TTCAAGACGTCCTTCTTTCGCGTTCTATTTTTTTTGTAGTACTACAGTAC
TGTACGTGTGCTGCAGTAACACTCGCGACCAACCCCACCGGGGTCGTTGT
TCACTCCCGAGCTGGGCGCATACTCGGGGCTTGCTTGTTGTTCGCGATGT
CTTGTCGCCTTAGACGTGGCCCACCCCCTCTCGCAAGAAGAGTTCAACAC
AATCGTTCCGTGATTTGAAACCAAGCGATTCCTTCGCGTACAGGTTCACT
ATGACTATTTACTCCATGGTGCAGCATTCAAGTGACCGGTGTACGAGCAC
ACATTAGACGTTTCCTCTTGTGTTGACGCCATTCCAGTGATTAACCGTCG
CTGGCGGTTCAACCTCTCCTGCGTCCTTCAACTCTTAACTCAAGACCGGA
TCGCACGAAAGATCTTGGCCTTTGCACCTCATCCAACACTTAAGAGCAGT
AGTAACCAACACCCGAGCCCAAGGGAAATGTGATTGAGTCACCGAGCACC
AAGATACCGTATACGACACCAGATAACACACCCCCTTGACCGATTTTCAA
AGCTCGATTTCTCAACTGCAGGAAGAGTCACAGCGCCGAAAACGGCGGCG
TAGGAACCGTCTCATCGAGAGCTTTTCGACAATGTATCATTTCGTGCATG
CATCCTCTTCGTCGTGGAGTAATCGAGCTTTGAAAATCGGTCCAGGGTGT
GTGTTATCTTGTGTCGTATACGGTACAACAATACTTCCCCTTGAACTACT
GCTACTGCTGTGGTTGTATATCGAACGGCTAGCATTCCTGTGATTGCATG
CATATTTTCTGAGAAGAAAACTGTGGCTTGAAATATGTGCTACTGCTGTC
GCGTGCCGTGATTGAAACCGGCCTGGTGCCCAGGTGCTAGCGGCCGCCAG
CGTGGTGGCCTTCGGCCCCGCTTTGGTCCTGGAGTACGTGCCCACATCCA
AGGTCGACGTCCGGGATGTGTCCAGTGCAGGTTCCCAGGCGGGACGGGTG
AGAGAAAGGGATAGTATACACACGAGGGGATGGGTCTCAACCGGGGATCG
GTTGTGTTGCTTTGGTCTTCGCTTTTTGGTCGAGCTCTTCGATTTCTCTG
GGTGCCTCTATCATTCGCTCTGCGGCCCCACCACACTCGGATGAGAGAGG
GTTCGCTTCGTTTCCTTACATGTAGTAGGTCCCAAGAGAAGAACCGCTTC
CAACATTTTTCTTTCATTGTGTTTTTGACGAGGCGAGGCTTGCGCGGACT
GCGCGACTGGCGGGAGGGTGCCGTTCCGAGGTGTACCATTGCACGGGCAG
GGGCCACGCGGTTGGCTAAGGTGGTTTCGCCATGAGGATGTTTTTACGGG
TTGGGGGGGGGGCGTTGTGTCAGCATTTCGAAATGGAGCACGTGTTGCGC
TGTTTTTTAGCAACGGTATACTGCTGTTTATTGCCCAATGCAATACATGA
GTCATTTAACGCAGGAAAGGAACGCCAGAAAACAAAACATCCCAGCGAGG
AGGGCGGCGGTGGTGCACGTTTGCTTTGTGTCTCTACCCAAGGTTCACAT
GGGCGTAGTTCTTTGCCCTTCACAGCCGTACAGGGTTCGACCTTCTCTCC
TCACTCCTCCCCCCGTTGCCGGTGTAGATCCAGCGCCTCCTGCTCGCGTT
CGCGGGGGGCGGGCTCATGGCCGAGGCCGCCCTCCACCTCCTCCCCCACC
TCTTCCTGCCCAAGCACGACCACGACGATCATGGCCACGAGGGCCTGGCC
GACGCGTGCACTCTCATCGCAGTGGGCTTCCTGGCGGCGTTCGCGATCGA
CCGGTTTGTCGGGGTCCGCCAGCAACGCCAGCACGGTGCGGCGGAGGCGG
AGGCGTCGGCGGTGGCGGCGCCTGCGGAGGGGAAAGAGGAGGCCGCCGCG
GTTACCGCCGCCGCCGTCTTGAGCGACAGCGGGGAGGCCGTCACTGCCGG
CGAGACCACCGACGCTAACAGCGAGGGCCAACCACAAGGCGACGAACAGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAACCGGAGGACCCG
ACCCGCGAGCTGCTGGAGTACTCAAGCGCCAGCGTCGAGGACGAGGGGAG
CGCGGCCGGGGCCATGCTCGCCTCCGCGCACATGTCGCAGACCCCAGAGA
AGAGGGTGAGTACGGCCTCCTCGGAGTCCTGCCGAGCCGGAGCCCCCGAA
GTCGTGGAGCTCTTCCCGGCAGATGCTCCGTCGTCGGACTCGGCTGTGGC
GGCGCCGTCGTCTCCGGAGCTGACGCTGTACGGGAACCCGAAGGATGCTG
CCACCACCGGGCAAGAGGTGTCGCCGGCAGGTGTGGGAGTCGGCTGCGGG
GGGACGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTTGTGTTTCGGTGTCT
CCTTGTATGTCACCGAGCGCCCTGGTTATCTCGTTCGCTTGGCGCGAACC
GACGGCTTGGCAGCCCTGAACACGCCCGACCCGACGCGTGCTTGGCGGAC
GCGCAACAGATGCTGCGGTTTCGAAAGGACACGCCGTCCTGGTGAGGGGC
GGCGGGGGCGACGCAGCCTGCAGTAAGGGTGACCACCACCACGACCACCA
CGACCACGGCCCGGCAGATGCTGGGGCGTACGTGACGCTGGCGGTGGACT
TCTTGCACAACCTCATCGATGGCATCGGGTGCGTTGAAACCCAGGCCGCG
TCCTAAGTGCTGTTTCCTCGTGAATGAATCCGATCAGCTTTGCCTTGACC
CGCGTTGTAGTTGTGTTGTTTTCTCCTGCGCCTGCAGCAGAGGTCAATCT
CACCACGTCGACTGTCCGCGCTATCCTCTCTCTGTTCCCTTCATTGCCCC
CCCCCCGTAGTTTCTCGCTATTGCGTGCCACGTCAAACTTCACCACTACA
TCGCGCATCCTGTCTCCATTCTCGTCCGTTTTTCTTCCCTTGCCCGTTGT
TTTGTTGCCGATGCTGCTTGCTTTGGGTAGGATTGGTGCGGCGTACGCAG
TGGGGGGCGACGCGGTGGGGCACGCAACAGCTGCCCTGAAGCTGGTGCAC
GAGGTGCAGCACGAGATCGGCGACGTAGCGACGCTAGTCCAGTGCGGCAT
GAGGTACGCAAAGACAAAAAAAAATGCTACATGCAGTCCAGTTCCGTGTT
CATTCGATTTTGAACATATTGAAGAGACGGACGGAATCAGGTGCACAAAG
TCTTCCGAAACCGGTGAATTTTAGTCCGTTTTTGGTTCGCTCCCAGAATT
ATTTGTTCGAGGCGGTGAAGCCAGACGAATTTAGTAGTTGCACGAGATTG
GAATCCCATGCTTTCTCCGTTCAACCAGCGCAAAATTCGTGGCCGTGGCC
GAGAAAATACAGGAACAGAGGGTGCATGCACACCACTACCGCTCGGCAGT
TTCATCAGTTACGTGCCTTGCCGCGAACGGGGGATTTGGATGAGTGTTTG
TTAAAGCTTCCAAAGCCGACCACTCACCCCACCTCCTGCCTATCTGTAAA
GTGATCCGCGGTCAATCGCCGAACGACCTTGAGGCAGCCAACAGACGAGT
TTTGCTCCCCCCCCAGTTTGCCATCGGGGTAGGGTTTTCGTCGCTTGGCA
ACGACGTTGTAAAGCAAGCCGATCGCTTCGTGAGCTCGGAAACCAGGTTA
CCGTTTTTTTTTTTGCGGTAACCATAGTGGTGGTCGAGTAGATTATGTTG
TGCGCGGTCGGGAATCCTCACTCCGCGCAAAGGGGATGATCGCAACACGT
GTTACATTGGTCACGCACCCTCAGGCAGTTACACAGTGCTCAGAACTGTC
TTTGGAAAGTGAAAGCACCAGAAAATAAATTCAGTCATTCGCAGCTGTCA
TTCGTATGCAAGGGAGTAAGCACAAGATGCCGAGCACCCTTAGCAAGACG
CAGCGCACCCTTCATGCGACTCGCCGAATACCTCACGGGGCTTCGCGCTT
GGTGATGTGAGAGCCTGGCCCGGTGAGAACCCGGCGTGCTCCGTCCCGGC
CTTGTAGGGATGCGAGGTCAATGGTCTATCGACTACGGCATGCACGACTA
TGAGTATGAGTACACCCCACCTTCCTCTGGTCAAATACCCACGGCACGCA
TGGTCTTCAGCGACCTCCCCCCCCCCTCCCCCCTGCGCCCCTTTCTTTAC
CACAGCAAGCACCACGCGATCCACATCCAGCACACCACCGCGGCTGGCGT
GTTTCTCGGGGTGGCCATCAGCCTGGGGGCCGGCGCCTTCCCCGAGGGCC
TCCTCGCCGCCTGCCTCGCCCTGTCCGCCGGAGCGACTTTCCACCTCGCT
TCCGGACCGGTCCTCGGACCGGTCCTCGCCATCCCGGCGGACGTGGGCGG
ACCCGTCCAGGGTCTCCTAGAGGTGGCGGCGTTGGCCGCCGGGGCGGCGG
GGGTGGTGGCGATCGGTCTGGCCGAAGGGTGGGCGGGGATAGGCCACTAG
AGTGGACGCTCTGCCGACAATAAAAAAGCTCTGTTTTTCTGGGATTTCTT
TCTCACTGGCGAGTTGGATTGTACCCCAAGGGTTTGTTCGCCTCTTCTAC
GGAACATTGGGGGTAGGGCTGTTTATTGAACGGAAGGGGGAGGGGTTCGA
CACTGCTTCCCTCGATGTGTTTGGTTGGATGGAGTGGTAGTACACTGTTT
TGTGCACGGAAGAAGGGGGTCGAGGGATGGGATGTTTTTGGTTGGAAGAG
GAACTTGGTGCAGCGACCACATGCACGGCTCGCGGCAGCGGCTGCTCAGC
GGGGTCGGGTTAAGCGAAGCGGGGGTGAATTCGGAGGCAAGTACGGAGAG
GGGGGCACGCGGATGGACAGGTCAAGGGGCCACGGTCACGAAAGGAGGAT
GTTATAGGGAAATCTCTTGTATGTAGATTAAATTTCGGAGTACAATATTT
TATGGGGCACAAAACAGCAGTGCGAGGGGACATGGGGGTGGGGTTGGGGT
TGGGGAGCCGGGACGAGCATAACAGGCGAGACAGAAGCAGGTAGAGATTG
GGGGGGGGGGGGAGAAGGTCGTCTGAAGATGGGATCGGACTGAACGGCTA
CTTTCGTGATGCGGTACTCGCTTACCCCTCAGGTACACGATGGACGAAGG
AAAGCTTAAGCTGATCTCCTAGTCTCTCTTAAAACAACAGAGATCATTTT
TGTTGTTTGTTGATTCCCCGATAACAGGAGAGTTCAGCAGAGAGCGTTCT
GCGTTAGCGCGGTATGAAAGGGGACAGGAGAGGACGGGAGAGCTCAGAGA
TGTGTCTCGGTGTGCATGTACCGAACTTCTCCTCTTTCCCGTGGTATCGT
CTCAAGGGCAGAGGAAGGTCGCACTACACCTGTACAGCAGTGTCGAGGAA
GGAATCGCCGCCACCTCAATGGAGGCCTCCTGCTCGCGGCGCGCCGCCCT
GCTTTGTTTTCAGTTTTCGAGACGTACGTATGTCTATCCGTGTTTTTTCC
TGGCGTCTCTCGCTCCTGTCTGTGTGAAGCCGCCGCACAACAGAGGTGCG
GGTGCGCCGGTAAATATTTGTGTTGCAGTAGTAGTGGAGGACCCTCTATA
ACGCCGGTATCTGCCCGGCGCATCGACTAGCGCCACTCAGAGGGATCGAC
GTTATTCAATGTACAGAATGACGTGGCGATTCAGTCTGCGCCCAGGAATT
TCACCGGCGTATAGGGCTACTGGCGCTAATCAACCGACGTTATTGACGCC
CGCCCAATGTATAGTTTCCCTTACATAACTGGTTACTTGTACCGCACGCC
CCGATTTCTTTCGGGTTTGCTGCTGGTGGAATGCACCTTACCCCCCGGAG
AGATACGTAGGCGTTGTGCCTGGTTTTGGGCTCGATCACATTGGCTGTGA
GCAAGACCACGTGTTGGGGGCGAAAATAGCAAAAGATTAGAGTATCAGGG
AGCGTGTTCGGGGATCTGATGGATGACAAGGAAGATGCTGGGGTTGGTTT
GGGACCTCTCTCTGGCTGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:428298..435416-

>mRNA_E-siliculosus-1a_M_contig83.16488.1 ID=mRNA_E-siliculosus-1a_M_contig83.16488.1|Name=mRNA_E-siliculosus-1a_M_contig83.16488.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2148bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:428298..435416- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTGCCGCAGCGGTGCAATGGGACCTATCTAGCATGGGACCGGAAGA
GCTGCTTTCTGAGGGCACGATCTTCTTTCTGGCGAAGATGCGTGCCGCAG
CGGTGCAATGGGACCTATCTAGCATGGGACCGGAAGAGCTGCTTTCTGAG
GGCACGATCTTCTTTCTGGCGAAGGTGCTAGCGGCCGCCAGCGTGGTGGC
CTTCGGCCCCGCTTTGGTCCTGGAGTACGTGCCCACATCCAAGGTCGACG
TCCGGGATGTGTCCAGTGCAGGTTCCCAGGCGGGACGGGTGCTAGCGGCC
GCCAGCGTGGTGGCCTTCGGCCCCGCTTTGGTCCTGGAGTACGTGCCCAC
ATCCAAGGTCGACGTCCGGGATGTGTCCAGTGCAGGTTCCCAGGCGGGAC
GGGACCCGACCCGCGAGCTGCTGGAGTACTCAAGCGCCAGCGTCGAGGAC
GAGGGGAGCGCGGCCGGGGCCATGCTCGCCTCCGCGCACATGTCGCAGAC
CCCAGAGAAGAGGGTGAGTACGGCCTCCTCGGAGTCCTGCCGAGCCGGAG
CCCCCGAAGTCGTGGAGCTCTTCCCGGCAGATGCTCCGTCGTCGGACTCG
GCTGTGGCGGCGCCGTCGTCTCCGGAGCTGACGCTGTACGGGAACCCGAA
GGATGCTGCCACCACCGGGCAAGAGGTGTCGCCGGCAGGACCCGACCCGC
GAGCTGCTGGAGTACTCAAGCGCCAGCGTCGAGGACGAGGGGAGCGCGGC
CGGGGCCATGCTCGCCTCCGCGCACATGTCGCAGACCCCAGAGAAGAGGG
TGAGTACGGCCTCCTCGGAGTCCTGCCGAGCCGGAGCCCCCGAAGTCGTG
GAGCTCTTCCCGGCAGATGCTCCGTCGTCGGACTCGGCTGTGGCGGCGCC
GTCGTCTCCGGAGCTGACGCTGTACGGGAACCCGAAGGATGCTGCCACCA
CCGGGCAAGAGGTGTCGCCGGCAGATGCTGCGGTTTCGAAAGGACACGCC
GTCCTGGTGAGGGGCGGCGGGGGCGACGCAGCCTGCAGTAAGGGTGACCA
CCACCACGACCACCACGACCACGGCCCGGCAGATGCTGGGGCGTACGTGA
CGCTGGCGGTGGACTTCTTGCACAACCTCATCGATGGCATCGGATGCTGC
GGTTTCGAAAGGACACGCCGTCCTGGTGAGGGGCGGCGGGGGCGACGCAG
CCTGCAGTAAGGGTGACCACCACCACGACCACCACGACCACGGCCCGGCA
GATGCTGGGGCGTACGTGACGCTGGCGGTGGACTTCTTGCACAACCTCAT
CGATGGCATCGGGATTGGTGCGGCGTACGCAGTGGGGGGCGACGCGGTGG
GGCACGCAACAGCTGCCCTGAAGCTGGTGCACGAGGTGCAGCACGAGATC
GGCGACGTAGCGACGCTAGTCCAGTGCGGCATGAGGATTGGTGCGGCGTA
CGCAGTGGGGGGCGACGCGGTGGGGCACGCAACAGCTGCCCTGAAGCTGG
TGCACGAGGTGCAGCACGAGATCGGCGACGTAGCGACGCTAGTCCAGTGC
GGCATGAGCAAGCACCACGCGATCCACATCCAGCACACCACCGCGGCTGG
CGTGTTTCTCGGGGTGGCCATCAGCCTGGGGGCCGGCGCCTTCCCCGAGG
GCCTCCTCGCCGCCTGCCTCGCCCTGTCCGCCGGAGCGACTTTCCACCTC
GCTTCCGGACCGGTCCTCGGACCGGTCCTCGCCATCCCGGCGGACGTGGG
CGGACCCGTCCAGGGTCTCCTAGAGGTGGCGGCGTTGGCCGCCGGGGCGG
CGGGGGTGGTGGCGATCGGTCTGGCCGAAGGGTGGGCGGGGATAGGCCAC
TAGCAAGCACCACGCGATCCACATCCAGCACACCACCGCGGCTGGCGTGT
TTCTCGGGGTGGCCATCAGCCTGGGGGCCGGCGCCTTCCCCGAGGGCCTC
CTCGCCGCCTGCCTCGCCCTGTCCGCCGGAGCGACTTTCCACCTCGCTTC
CGGACCGGTCCTCGGACCGGTCCTCGCCATCCCGGCGGACGTGGGCGGAC
CCGTCCAGGGTCTCCTAGAGGTGGCGGCGTTGGCCGCCGGGGCGGCGGGG
GTGGTGGCGATCGGTCTGGCCGAAGGGTGGGCGGGGATAGGCCACTAG
back to top