mRNA_E-siliculosus-1a_M_contig83.16485.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16485.1
Unique NamemRNA_E-siliculosus-1a_M_contig83.16485.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Match: D7G8E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E0_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 7.270e-105
Identity = 154/170 (90.59%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    1 MNATSGRGPHDLKELLDSLVEHTEVDGRPVLYLNGDREELQLQDEWDHREMLQTQQARHRDADARTRAELEAWGCETDATGAVIRTVGRSQDSTMGVGGIIACETRVAPFDPVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLVEVGVEGLAWRHSGHSSVGAWLW 510
            MN TSGR PHDLKELLDSLVEHTE DGRPVLYL  D EELQ+QDEWD RE LQTQQARHRDADARTRAELEAWGCETD TGAVIR+ GRSQDS MGVGGIIACETRVAPFD VSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTL EVGVEGLAWR SGHSSVGAWLW
Sbjct:    1 MNTTSGRVPHDLKELLDSLVEHTEDDGRPVLYLKDDGEELQVQDEWDQREELQTQQARHRDADARTRAELEAWGCETDVTGAVIRSGGRSQDSAMGVGGIIACETRVAPFDLVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLAEVGVEGLAWRRSGHSSVGAWLW 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Match: A0A6H5KUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK3_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.740e-53
Identity = 98/163 (60.12%), Postives = 103/163 (63.19%), Query Frame = 1 
Query:  169 ARHRDADARTRAELEAWGCETDATGAVIRTVGRSQDSTMGVGGIIACETRVAPFDPVSDEDWQV-------------------------------------------------VSDLQADQRVVRQLVCVNGIEADELTLVEVGVEGLAWRHSGHSSVGAWLW 510
            ARH+DADARTRAE+EAWGCE +ATGAV R+ GRSQDS MGVGGI+A ETR APFD VS EDWQV                                                 VSDLQADQRVVRQLVC NGIEADELTL EVGVEGLAWR SGHSSVGAWLW
Sbjct:    3 ARHQDADARTRAEVEAWGCEPNATGAVFRSGGRSQDSAMGVGGILARETRAAPFDRVSHEDWQVRFDITRSGRHIYTFTHVVEGARSTVKARELYFHEKVILLSCARNRNTGVVSDLQADQRVVRQLVCANGIEADELTLAEVGVEGLAWRRSGHSSVGAWLW 165
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.720e-30
Identity = 77/177 (43.50%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:   25 PHDLKELLDSLVEHTEVDGRPVLYLN----------GDRE----ELQLQDEWDHREMLQTQQARHRDADARTRAELEAWGCETDATGAVIRT-------VGRSQDSTMG------------VGGIIACETRVAPFDPVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLVEVGV 456
            P  L ELLDSLVE+ + DGRP+LY N          G RE    +++LQDEWD REM   +QA  R A+A+  AE+  WGCETDA GA           VGR+  +T G              G+ A   R  PF+P  DE WQ+   + A +++VRQL+ VNG+EADELTL E  V
Sbjct:  882 PRCLDELLDSLVEYRDDDGRPILYFNDNIASFKAAVGGREAGGGDIRLQDEWDEREMANLRQAGSRQAEAQAAAEIRLWGCETDAAGAPTGASPSSAGHVGRAATATGGGAXXXXXXXXXXXXGVDADNARFVPFEPACDEKWQLAMPMPAGRKMVRQLMFVNGVEADELTLAEASV 1058
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.130e-28
Identity = 74/175 (42.29%), Postives = 98/175 (56.00%), Query Frame = 1 
Query:   25 PHDLKELLDSLVEHTEVDGRPVLYLN----------GDRE----ELQLQDEWDHREMLQTQQARHRDADARTRAELEAWGCETDATGAVIRT-------VGRSQDSTMG------------VGGIIACETRVAPFDPVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLVEV 450
            P  L ELLDSLVE+ + DGRP+LY N          G RE    +++LQDEWD REM   +QA  R A+ +  AE+  WGCETDA GA           +GR+  +T              V G+ A   R  PF+P  DE+WQ+   + A +++VRQL+ VNG+EADELTL E+
Sbjct:  850 PRCLDELLDSLVEYRDDDGRPILYFNDNIDSFKAAVGGREAVSDDIRLQDEWDEREMANLRQAGSRQAETQAAAEIRLWGCETDAAGAPTGAAPSSAGHLGRAATATGSXXXXXXXXXXERVAGVDADNARFVPFEPACDENWQLAMPMPAGRKMVRQLMFVNGVEADELTLAEL 1024
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Match: A0A6H5KTU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.430e-24
Identity = 53/72 (73.61%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   82 RPVLYLNGDREELQLQDEWDHREMLQTQQARHRDADARTRAELEAWGCETDATGAVIRTVGRSQDSTMGVGG 297
            RPVLYL    EELQLQDEWD REMLQTQQAR RDAD  TRAE+E WGCETDATGAV R+  RSQDS +   G
Sbjct:   22 RPVLYLKDGVEELQLQDEWDQREMLQTQQARRRDADPGTRAEVETWGCETDATGAVFRSGRRSQDSAILASG 93
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8E0_ECTSI7.270e-10590.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUK3_9PHAE1.740e-5360.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA82_9PHAE9.720e-3043.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC5_ECTSI1.130e-2842.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTU0_9PHAE1.430e-2473.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:390748..391711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size513
Model size513
Exons3
Ec32 orthologEc-00_010810.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16485.1prot_E-siliculosus-1a_M_contig83.16485.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig83 390748..391711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936273.6179898-CDS-E-siliculosus-1a_M_contig83:390747..3908301622936273.6179898-CDS-E-siliculosus-1a_M_contig83:390747..390830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 390748..390830 +
1696251002.7744298-CDS-E-siliculosus-1a_M_contig83:390747..3908301696251002.7744298-CDS-E-siliculosus-1a_M_contig83:390747..390830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 390748..390830 +
1622936273.6341858-CDS-E-siliculosus-1a_M_contig83:390994..3912681622936273.6341858-CDS-E-siliculosus-1a_M_contig83:390994..391268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 390995..391268 +
1696251002.785325-CDS-E-siliculosus-1a_M_contig83:390994..3912681696251002.785325-CDS-E-siliculosus-1a_M_contig83:390994..391268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 390995..391268 +
1622936273.6498122-CDS-E-siliculosus-1a_M_contig83:391555..3917111622936273.6498122-CDS-E-siliculosus-1a_M_contig83:391555..391711Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 391556..391711 +
1696251002.7968087-CDS-E-siliculosus-1a_M_contig83:391555..3917111696251002.7968087-CDS-E-siliculosus-1a_M_contig83:391555..391711Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 391556..391711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig83.16485.1

>prot_E-siliculosus-1a_M_contig83.16485.1 ID=prot_E-siliculosus-1a_M_contig83.16485.1|Name=mRNA_E-siliculosus-1a_M_contig83.16485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=171bp
MNATSGRGPHDLKELLDSLVEHTEVDGRPVLYLNGDREELQLQDEWDHRE
MLQTQQARHRDADARTRAELEAWGCETDATGAVIRTVGRSQDSTMGVGGI
IACETRVAPFDPVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLVEV
GVEGLAWRHSGHSSVGAWLW*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig83:390748..391711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig83.16485.1 ID=mRNA_E-siliculosus-1a_M_contig83.16485.1|Name=mRNA_E-siliculosus-1a_M_contig83.16485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=964bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:390748..391711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAATGCGACGTCGGGTCGTGGCCCTCATGACTTGAAAGAGCTGCTCGA
CTCCTTGGTGGAGCACACCGAAGTTGACGGTCGGTGAGTGTGTCTTCTGG
TTTTTGTAGGATATCCAAGGACTGCTCTTTGGCGAGGGGTCGGAGGCCAA
CCACCGCGGGAACGGTCGGAATCCCCGCCGATGCGTGCTTCCTACAATCA
ATTTTTCGCCTTCTCTTGCCTGGCCCACGCCGCTGTCACGTCGAGAGGCC
TGTCCTGTACTTGAATGGCGATCGAGAGGAGCTCCAGCTTCAGGACGAGT
GGGACCATCGAGAAATGCTCCAGACGCAGCAAGCACGGCACCGGGACGCC
GATGCAAGAACTCGCGCGGAGCTTGAAGCGTGGGGATGCGAAACGGACGC
CACAGGGGCAGTTATTCGAACTGTTGGGAGATCACAAGACTCGACTATGG
GCGTCGGGGGCATAATTGCTTGTGAAACGCGTGTTGCGCCGTTCGACCCA
GTGTCCGATGAAGATTGGCAGGTGCGATTCGGCATTACTCGCTCTGATCG
TCATACCTAGAAACACGTTGTTGAGGGCGCCCGTGGTAAGGTAAAAGCCA
TTGTATTTTCATGAGAAGGCCACCCTCTTGTCATGCGCAGTCGGAATACA
GGCGTAACATGCATGCGTTGCAGCATTCGACCGTCTTCTGTGCCCTTGGT
CCCAAGCGGGAAGGGTGGATTGCTTATGTCTTCTTTCCCAGTCTTGTGGG
TTGGGTCGTGTGCTTCCTTCGTCTGACTTGGTGTTTCCGCCTCCAACGCG
TGTTATAGGTTGTTTCGGACTTGCAAGCCGACCAGAGGGTTGTGCGTCAG
CTGGTGTGCGTCAACGGCATCGAGGCGGACGAGTTGACGCTGGTGGAGGT
GGGTGTCGAGGGCTTGGCGTGGCGGCACTCTGGCCATTCGTCCGTTGGTG
CTTGGTTGTGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:390748..391711+

>mRNA_E-siliculosus-1a_M_contig83.16485.1 ID=mRNA_E-siliculosus-1a_M_contig83.16485.1|Name=mRNA_E-siliculosus-1a_M_contig83.16485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:390748..391711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAATGCGACGTCGGGTCGTGGCCCTCATGACTTGAAAGAGCTGCTCGA
CTCCTTGGTGGAGCACACCGAAGTTGACGGTCGATGAATGCGACGTCGGG
TCGTGGCCCTCATGACTTGAAAGAGCTGCTCGACTCCTTGGTGGAGCACA
CCGAAGTTGACGGTCGGCCTGTCCTGTACTTGAATGGCGATCGAGAGGAG
CTCCAGCTTCAGGACGAGTGGGACCATCGAGAAATGCTCCAGACGCAGCA
AGCACGGCACCGGGACGCCGATGCAAGAACTCGCGCGGAGCTTGAAGCGT
GGGGATGCGAAACGGACGCCACAGGGGCAGTTATTCGAACTGTTGGGAGA
TCACAAGACTCGACTATGGGCGTCGGGGGCATAATTGCTTGTGAAACGCG
TGTTGCGCCGTTCGACCCAGTGTCCGATGAAGATTGGCAGGCCTGTCCTG
TACTTGAATGGCGATCGAGAGGAGCTCCAGCTTCAGGACGAGTGGGACCA
TCGAGAAATGCTCCAGACGCAGCAAGCACGGCACCGGGACGCCGATGCAA
GAACTCGCGCGGAGCTTGAAGCGTGGGGATGCGAAACGGACGCCACAGGG
GCAGTTATTCGAACTGTTGGGAGATCACAAGACTCGACTATGGGCGTCGG
GGGCATAATTGCTTGTGAAACGCGTGTTGCGCCGTTCGACCCAGTGTCCG
ATGAAGATTGGCAGGTTGTTTCGGACTTGCAAGCCGACCAGAGGGTTGTG
CGTCAGCTGGTGTGCGTCAACGGCATCGAGGCGGACGAGTTGACGCTGGT
GGAGGTGGGTGTCGAGGGCTTGGCGTGGCGGCACTCTGGCCATTCGTCCG
TTGGTGCTTGGTTGTGGTGAGTTGTTTCGGACTTGCAAGCCGACCAGAGG
GTTGTGCGTCAGCTGGTGTGCGTCAACGGCATCGAGGCGGACGAGTTGAC
GCTGGTGGAGGTGGGTGTCGAGGGCTTGGCGTGGCGGCACTCTGGCCATT
CGTCCGTTGGTGCTTGGTTGTGGTGA
back to top