mRNA_E-siliculosus-1a_M_contig83.16473.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16473.1
Unique NamemRNA_E-siliculosus-1a_M_contig83.16473.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: D7FT57_ECTSI (ARL8, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT57_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.220e-120
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSRG 923
            MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQ+IRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSRG
Sbjct:    1 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQIIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSRG 178          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: F0WPJ3_9STRA (AlNc14C187G8338 protein n=34 Tax=Oomycota TaxID=4762 RepID=F0WPJ3_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.170e-95
Identity = 136/177 (76.84%), Postives = 163/177 (92.09%), Query Frame = 3
Query:  387 IMGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQS 917
            IMGA  Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDA+A ++ +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+ E ++IRELNLDYV  NPW++IP SAL+++NIDQV+QWL+KQS
Sbjct:   33 IMGAILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDANAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHICEPELIRELNLDYVVDNPWLMIPCSALRLVNIDQVIQWLMKQS 209          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: F0YA37_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA37_AURAN)

HSP 1 Score: 286 bits (731), Expect = 2.590e-94
Identity = 134/175 (76.57%), Postives = 159/175 (90.86%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQ 914
            MGA F ++L AFY ++LEVVLVGLENSGKTTL+NVLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDA+A +   LAR+ELHRLLED ELA+TPLLV+ANK+DL+PH+SE  +IRELNLDY+T NPWI+IP+SALKVINIDQVL WL+KQ
Sbjct:    1 MGAIFTKLLDAFYNKKLEVVLVGLENSGKTTLLNVLAAGRPVETCPTIGLNVKLVRKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDANALDSIPLARKELHRLLEDRELATTPLLVIANKIDLDPHISEPDLIRELNLDYITENPWIVIPVSALKVINIDQVLSWLIKQ 175          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A7S2C4S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4S7_9STRA)

HSP 1 Score: 284 bits (727), Expect = 9.780e-94
Identity = 135/177 (76.27%), Postives = 158/177 (89.27%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSR 920
            MG   QRM  AFYT++LEVVLVG+ENSGKTTL++VLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDAHA +   LAR+ELHRLLED ELA+TPLLVLANKVDLEPH+SE ++I ELNLDY+  NPWI+IPISALKV NIDQV+QWL+KQ +
Sbjct:    1 MGQLLQRMFDAFYTKKLEVVLVGIENSGKTTLLSVLANGAPVETCPTIGLNVKLVRKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDAHAFDTIPLARKELHRLLEDRELATTPLLVLANKVDLEPHISEPELITELNLDYIVDNPWIVIPISALKVTNIDQVIQWLIKQGK 177          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A8J2SSV8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV8_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.840e-92
Identity = 130/178 (73.03%), Postives = 158/178 (88.76%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSRG 923
            MGA   ++L  FY ++LEVVLVGLENSGKTTL+NVLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQAQYR EWGRYTRGCDVI++VVD+HA E   LAR+ELHRLLED ELA+TP+LV++NK+DLEPH++E  +IR+LNLDYVT NPWI+IPISALKV+N+DQVLQWL+KQ   
Sbjct:    1 MGAFLTKLLDTFYAKKLEVVLVGLENSGKTTLLNVLAAGRPVETCPTIGLNVKLVRKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIFVVDSHAIESIPLARKELHRLLEDRELATTPVLVVSNKIDLEPHVTEGDLIRDLNLDYVTENPWIVIPISALKVVNVDQVLQWLIKQGNS 178          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A485LCR6_9STRA (Aste57867_19416 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCR6_9STRA)

HSP 1 Score: 282 bits (722), Expect = 3.550e-92
Identity = 137/204 (67.16%), Postives = 168/204 (82.35%), Query Frame = 3
Query:  360 TRRERLHQSIMGAAFQRMLSAFYTRQLEVVLVGLEN------------------SGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQS 917
            +R +   + IMG   QRML AFYT++LEVVLVGLEN                  +GKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDA+A ++ +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL+++NIDQV+QWL+KQS
Sbjct:   26 SREKASQRRIMGGILQRMLQAFYTKKLEVVLVGLENRYGVLADYAPVEERHLDDAGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDANAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRLVNIDQVIQWLMKQS 229          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A0P1AND5_PLAHL (Adp-ribosylation factor family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AND5_PLAHL)

HSP 1 Score: 290 bits (743), Expect = 7.780e-92
Identity = 135/176 (76.70%), Postives = 163/176 (92.61%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQS 917
            MG   Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDA+A ++ +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL+++NIDQV+QWL+KQS
Sbjct:    1 MGGILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDANAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRLVNIDQVIQWLMKQS 176          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A7S2RSV3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSV3_9STRA)

HSP 1 Score: 279 bits (714), Expect = 8.880e-92
Identity = 129/177 (72.88%), Postives = 161/177 (90.96%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSR 920
            MGA  QRML +FYT++LEVVL+GLENSGKTTL+NVLA G P++TVPTIGLNVK++K+GG+QM CWD+GGQ QYR EWGRYTRGCDVI++VVDAHA +K   A++ELHRLLED++LA+TP+LVLANK+DL+PH+SE ++IRELNLDY+  NPW++IPISAL+V NIDQV+QWLVKQS+
Sbjct:    1 MGALLQRMLDSFYTKKLEVVLIGLENSGKTTLLNVLAHGAPMETVPTIGLNVKLVKQGGIQMHCWDLGGQEQYRTEWGRYTRGCDVILFVVDAHAMDKLPSAKKELHRLLEDQQLATTPILVLANKIDLDPHVSEAELIRELNLDYIVDNPWVVIPISALQVTNIDQVVQWLVKQSK 177          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A2D4CIT1_PYTIN (Arf/Sar family, other n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIT1_PYTIN)

HSP 1 Score: 275 bits (702), Expect = 6.670e-86
Identity = 128/167 (76.65%), Postives = 154/167 (92.22%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQ 890
            MG   Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQAQYR EWGRYTRGCDVI+YVVDA+A ++ +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL+++NIDQ
Sbjct:    1 MGGILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDANAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRLVNIDQ 167          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Match: A0A812THX3_SYMMI (Arl8 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812THX3_SYMMI)

HSP 1 Score: 258 bits (659), Expect = 2.320e-83
Identity = 121/178 (67.98%), Postives = 151/178 (84.83%), Query Frame = 3
Query:  390 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVINIDQVLQWLVKQSRG 923
            MG  FQR+L+  +T++LEVVLVGLENSGKTTL+ VL+ G P +T PTIGLNVKM+KRGGVQMKCWD+GGQ+ YR EWGRYTRGC+VI++VVDAHA +     + ELHRLLED EL++TPLLV+ANK+DLEPH +E Q+I+ELNLDY+  NPWI+IP SALK  NID+V+QWL++Q+ G
Sbjct:    1 MGNVFQRLLNMLFTKKLEVVLVGLENSGKTTLLQVLSDGSPTETAPTIGLNVKMVKRGGVQMKCWDLGGQSIYRAEWGRYTRGCNVIIFVVDAHAMDILPDVKIELHRLLEDRELSTTPLLVVANKIDLEPHATEPQLIKELNLDYIVDNPWIIIPCSALKNTNIDEVVQWLLRQADG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT57_ECTSI1.220e-12099.44ARL8, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
F0WPJ3_9STRA1.170e-9576.84AlNc14C187G8338 protein n=34 Tax=Oomycota TaxID=47... [more]
F0YA37_AURAN2.590e-9476.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C4S7_9STRA9.780e-9476.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SSV8_9STRA1.840e-9273.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485LCR6_9STRA3.550e-9267.16Aste57867_19416 protein n=1 Tax=Aphanomyces stella... [more]
A0A0P1AND5_PLAHL7.780e-9276.70Adp-ribosylation factor family n=1 Tax=Plasmopara ... [more]
A0A7S2RSV3_9STRA8.880e-9272.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4CIT1_PYTIN6.670e-8676.65Arf/Sar family, other n=2 Tax=Pythium insidiosum T... [more]
A0A812THX3_SYMMI2.320e-8367.98Arl8 protein n=1 Tax=Symbiodinium microadriaticum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:289391..292653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size537
Model size939
Exons5
Ec32 orthologEc-19_003510.1
Ec32 ortholog descriptionARL8, ARF-like Ras superfamily GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko00536,ko00537,ko01000,ko02042,ko04031,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC3.2.1.35
EggNOG OGsCOG1100@1,KOG0075@2759
EggNOG free text desc.Belongs to the small GTPase superfamily. Arf family
GOsGO:0000166,GO:0000306,GO:0000323,GO:0000819,GO:0001666,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005819,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0008088,GO:0008092,GO:0008150,GO:0008333,GO:0009628,GO:0009987,GO:0010008,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019898,GO:0022402,GO:0030141,GO:0030496,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031312,GO:0031410,GO:0031902,GO:0031982,GO:0032418,GO:0032419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0035577,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042582,GO:0043014,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0046903,GO:0046907,GO:0048487,GO:0048786,GO:0050896,GO:0051179,GO:0051233,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0070482,GO:0070820,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098813,GO:0098852,GO:0099111,GO:0099503,GO:0101002,GO:0101003,GO:1901265,GO:1901363
KEGG ModuleM00076,M00077
KEGG Pathwayko00531,ko01100,map00531,map01100
KEGG ReactionR07824,R07825,R10905
KEGG koko:K01197,ko:K07955,ko:K07977
Preferred nameARL8B
Seed eggNOG ortholog2880.D7FT57
Seed ortholog evalue7.1e-95
Seed ortholog score353.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936271.2660913-UTR-E-siliculosus-1a_M_contig83:289390..2894031622936271.2660913-UTR-E-siliculosus-1a_M_contig83:289390..289403Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 289391..289403 -
1696251001.5884025-UTR-E-siliculosus-1a_M_contig83:289390..2894031696251001.5884025-UTR-E-siliculosus-1a_M_contig83:289390..289403Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 289391..289403 -
1622936271.405735-UTR-E-siliculosus-1a_M_contig83:292264..2926531622936271.405735-UTR-E-siliculosus-1a_M_contig83:292264..292653Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 292265..292653 -
1696251001.675908-UTR-E-siliculosus-1a_M_contig83:292264..2926531696251001.675908-UTR-E-siliculosus-1a_M_contig83:292264..292653Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig83 292265..292653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936271.283752-CDS-E-siliculosus-1a_M_contig83:289403..2894571622936271.283752-CDS-E-siliculosus-1a_M_contig83:289403..289457Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 289404..289457 -
1696251001.6080585-CDS-E-siliculosus-1a_M_contig83:289403..2894571696251001.6080585-CDS-E-siliculosus-1a_M_contig83:289403..289457Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 289404..289457 -
1622936271.3001103-CDS-E-siliculosus-1a_M_contig83:289738..2899271622936271.3001103-CDS-E-siliculosus-1a_M_contig83:289738..289927Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 289739..289927 -
1696251001.6178396-CDS-E-siliculosus-1a_M_contig83:289738..2899271696251001.6178396-CDS-E-siliculosus-1a_M_contig83:289738..289927Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 289739..289927 -
1622936271.323374-CDS-E-siliculosus-1a_M_contig83:290564..2906991622936271.323374-CDS-E-siliculosus-1a_M_contig83:290564..290699Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 290565..290699 -
1696251001.6333997-CDS-E-siliculosus-1a_M_contig83:290564..2906991696251001.6333997-CDS-E-siliculosus-1a_M_contig83:290564..290699Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 290565..290699 -
1622936271.3429449-CDS-E-siliculosus-1a_M_contig83:291172..2912281622936271.3429449-CDS-E-siliculosus-1a_M_contig83:291172..291228Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 291173..291228 -
1696251001.64429-CDS-E-siliculosus-1a_M_contig83:291172..2912281696251001.64429-CDS-E-siliculosus-1a_M_contig83:291172..291228Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 291173..291228 -
1622936271.363793-CDS-E-siliculosus-1a_M_contig83:292161..2922641622936271.363793-CDS-E-siliculosus-1a_M_contig83:292161..292264Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 292162..292264 -
1696251001.6617265-CDS-E-siliculosus-1a_M_contig83:292161..2922641696251001.6617265-CDS-E-siliculosus-1a_M_contig83:292161..292264Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig83 292162..292264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16473.1prot_E-siliculosus-1a_M_contig83.16473.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig83 289404..292264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig83.16473.1

>prot_E-siliculosus-1a_M_contig83.16473.1 ID=prot_E-siliculosus-1a_M_contig83.16473.1|Name=mRNA_E-siliculosus-1a_M_contig83.16473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=179bp
MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGL
NVKMIKRGGVQMKCWDIGGQAQYRGEWGRYTRGCDVIVYVVDAHAEEKAA
LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTAN
PWILIPISALKVINIDQVLQWLVKQSRG*
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mRNA from alignment at E-siliculosus-1a_M_contig83:289391..292653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig83.16473.1 ID=mRNA_E-siliculosus-1a_M_contig83.16473.1|Name=mRNA_E-siliculosus-1a_M_contig83.16473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3263bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:289391..292653- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCACCCTTTGGTCTTCATTGGCTAACCCTTCAATCGACGCGACTGCAGT CGGTCTTCTCTGCCAAAGGATTTTCTACGGGCGTCTCTGCGACGGCTGCT GTGTTGGCTGTCGACCGCTACGACAAAAGCAGTACCTCGCGCGGGAGGAA GTGTTCCCGTCCCTCCTCTCCTCTCTCGTCTAGCTGTCTCTCCGTCTCTC TTGTTCCAGCGGGTACAACACCCTCTGCCCAGCCGCAGCTGTGAAGACAA ATCCTTGTGTGTGGGCAACCTGAGGATTGTGGGTAGGCGACATCAGGGTT GCTGTGATACCGAGCACGGCGAATAGCCGGCATACATAACATACACCCCG GCCGGCGCAACGAGGAGGGAGAGGCTACATCAATCGATCATGGGGGCCGC CTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACAACTGGAGGTGGTGC TGGTCGGTCTGGAGAACAGCGGGAAGACGACCTTGATGAATGGTGAGCGC GCAGCAAGTGCTTGGTATGCATCCTCCAAAAGAGAGACAGCAGTACAATT GTCGCCCTTGTTGCAGGGACAGGGCGATCAGCTGTTGCTGCGTAGAGCGG TACGTTCGTGGCCTGTGGTGTTATCTTACACCACCAGAACACCACCAGAG TACCCATGCAACCATGGCAGGTGTTAAGCTTCGATCAGTATTTACTTTAT TTGCCCGATGCTTGAAGCCAGCCCTCCGATAGATCGACAAAGCTACTGCC GTACCTTTCGGCATTTAGTGCGGCGAGACTTTTTAGCACTCAAGCCGTGC GGCGAGACTCCACACTGGCCGAGGTCGGCGGGAATTAACGATGGTAGGCC ATCCGAGAGGAACAAATCACGCGGTGCTCTCTCAGCGCTTGCACCGATAG CCAAGTCCATCAAATAGCATTGGACAGCACACGATCAAACGATGGCGGAG GGCTTAGAACAGCAGTCACGGATTATTGAACTTACTTCCTTTCGGCTTTC TGCAGACACGTCGGCCGTGTTCCCGGCAACGTGCAACACTGCAATTTGGG TGGATACAAAGGGTGCACTGATCGCAGTTGTATGTTGTTGTTTTTCTTGG GGGGGGGGTAGCGTGCAGTGACACCCTCAGGTCCGACAAGTAAAGGAAAG GACAAACATTGCGCAACTTAGCCCCGTACGGCGGTTGATACGAACTACTT CGGTTTTCTGTTGCTTGTGAAAGGGAGCAGTTACAGGGTTTCGTCGTGAA CAACCCTCTCAACTTTCTTTCTCGCGTACTGTATAGTCCGTTCTTCAACA GCTGTTGCTGTGTGTCTACGGCGACAATACGGTCAAACATACTATAGGTC CAATCACAACGCCTCATAGTACACCTCCGCGTGTTCGGTTGATGCTGCTC TTGTGTTTTGTTCGCTCCGCCGCAGTGCTCGCTAGCGGCCATCCGGTGGA CACGGTTCCGACCATCGGGCTCAACGTCAAGGTGCAGTTCTCTTGGCCCT TTCCCTCCATAGTGGCGGTTTCGGCGATTGTTTTGGTTGGTGGCCAGCGA ATCTGGTGGCATGGGGGTAGCGCAAATGGCGATGTAAATCTTTTTGGCGT TCAGTCTTGTGATTCGGCGCAATCACGCGCGCGAGAAAGAAGCTTGCATG CCCACCTCGGGCGCCTATGACGTCAACACACGCCGCATCTCATCCTTGCC CGACCTGGTTGTATCGCCCGGCTGTGTGCCTTTCCTGGTACCAATGTTGT TTCGAGTCGGGCATTTTCAGGCCAACCCAGCTAAATGTTTCACCCAGTTC CGCTTCAGAGGTGCATGTTGGTGCAAGTTTGACTGCGCCGCAAAAAAGCG GATGAATGGCTTCCCTCAACCAATTAAGGTTAGGCTTGCAACGGGTGGCG CACTCTCATCTTTCTAACGCGAGAAGTGACCCCCCCCGGACAAAAAAAAA TCAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTGCTGGGACATCGGGG GACAGGCCCAGTACAGGGGCGAGTGGGGCCGCTACACGAGAGGGTGCGAC GTGATCGTCTACGTTGTTGATGCTCACGCCGAAGAGAAGGTGAAAAGCCG CCAATATGAAAAGTGTGTCCGTTTTCCAGGAGCCGGTCTTTCTCCCATTC ACTTCGGCAAAGGACGGACGGGTGTTGTTATCTAGAACGGCCAGTATTTT CTGTGGCTGTGTATGTTTTCTGAAAACGTCGCTTGCAAGAGATGGGCACG TCCTTGTGCCGCTCCTTGTAGCAAGATTGGTTGGAGACGACTGGTTACAT GGCTCTGATTGGGCCAAGCAGGTGTCCTCCATGTTACTCGATCAAGCATA AGCATATGAAAAACAATCCCCCTTCCCTCACACCCAACACCCACACCCAC ACGCCTCTGCTCCGCCTCGAAAACGTCTCACCTCAGTCATCATTCGCACC CACCTCCAGCATGACCATGCACCAATACCGATGCTCCCTCCCAAATCAAA CGTAAGGATAATGACCAACCAGCTTCTGGTTGATCCTTGTGAAACGTAGC CTGGGCCGGAAAAAAACCCGGCACATCGCTCCGTCCCGGCGTTGTATCAT AGGGATGCTTGGTGAATGTGTATTTTCACGTCTACGGCCTGCGTTTACGG GAGCACACACCGCTGCAGCATGACCATGCGTTTGTACCGGTACGCCCCCC CGCCCATTGGAAATCCTTCTGCCCAGGCGGCGCTCGCCAGACGAGAACTG CATCGATTACTGGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGTT GGCGAACAAGGTTGATCTGGAGCCGCATATGAGCGAGGACCAGGTCATCC GGGAGTTGAATCTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCCG ATATCGGCGCTCAAGGTAAACGATGTTGCTTTTGATGGGTGGTGATGGAG AAGGTGCCGCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCTGCTGCT GCTGCTGCTGCTGCTGTGACTACTGGTCCATGGTTCCTTGTAGTTCAAGT TTGTTATTGTGTGCCACTGCTGTGAGGTAGTCCAACCATGTGGCACGCCG GAACCAATTGCAGTTGTGCCATTTTTTGAGCTGACCGCATAACTTCGCGA TCCTTCCTCTCTCGCTCTGCCGCTGTTGAACGGAACGTGACAAAAGGTGA TAAACATTGACCAGGTTTTGCAATGGCTCGTCAAGCAGTCCCGAGGCTAG GCCGATTCTCCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:289391..292653-

>mRNA_E-siliculosus-1a_M_contig83.16473.1 ID=mRNA_E-siliculosus-1a_M_contig83.16473.1|Name=mRNA_E-siliculosus-1a_M_contig83.16473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:289391..292653- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACAACT
GGAGGTGGTGCTGGTCGGTCTGGAGAACAGCGGGAAGACGACCTTGATGA
ATGATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACA
ACTGGAGGTGGTGCTGGTCGGTCTGGAGAACAGCGGGAAGACGACCTTGA
TGAATGTGCTCGCTAGCGGCCATCCGGTGGACACGGTTCCGACCATCGGG
CTCAACGTCAAGTGCTCGCTAGCGGCCATCCGGTGGACACGGTTCCGACC
ATCGGGCTCAACGTCAAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTG
CTGGGACATCGGGGGACAGGCCCAGTACAGGGGCGAGTGGGGCCGCTACA
CGAGAGGGTGCGACGTGATCGTCTACGTTGTTGATGCTCACGCCGAAGAG
AAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTGCTGGGACATCGGGGG
ACAGGCCCAGTACAGGGGCGAGTGGGGCCGCTACACGAGAGGGTGCGACG
TGATCGTCTACGTTGTTGATGCTCACGCCGAAGAGAAGGCGGCGCTCGCC
AGACGAGAACTGCATCGATTACTGGAGGACGAGGAGCTGGCGTCTACGCC
GCTGCTGGTGTTGGCGAACAAGGTTGATCTGGAGCCGCATATGAGCGAGG
ACCAGGTCATCCGGGAGTTGAATCTCGACTACGTGACCGCAAACCCTTGG
ATTCTTATCCCGATATCGGCGCTCAAGGCGGCGCTCGCCAGACGAGAACT
GCATCGATTACTGGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGT
TGGCGAACAAGGTTGATCTGGAGCCGCATATGAGCGAGGACCAGGTCATC
CGGGAGTTGAATCTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCC
GATATCGGCGCTCAAGGTGATAAACATTGACCAGGTTTTGCAATGGCTCG
TCAAGCAGTCCCGAGGCTAGGTGATAAACATTGACCAGGTTTTGCAATGG
CTCGTCAAGCAGTCCCGAGGCTAG
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