mRNA_E-siliculosus-1a_M_contig825.16446.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig825.16446.1
Unique NamemRNA_E-siliculosus-1a_M_contig825.16446.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig825.16446.1 vs. uniprot
Match: D7G941_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G941_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.290e-84
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:   10 FTKKQEKNSRMRNRWSSVWIKCCQG-KPRACQRVADPSARRNTKSQKVCLPEVRTDVELPMLSSRHRCVSAPLFSASGDESSDKSTEESRWEMDIGRALLLNFISFLAPIEHDRCIHGLFGTSSAVERSELLRCSP 414
            FTKKQEKNSRMRNRWSSVWIKCCQG KPRACQRVADPSARRNTKSQKVCLPEVRTDV+LPMLSSRHRCVSAPLFSASGDESSDKSTEESRWEMDIGRALLLNFISF   ++HDRCIHGLFGTSSAVERSELLRCSP
Sbjct:  121 FTKKQEKNSRMRNRWSSVWIKCCQGGKPRACQRVADPSARRNTKSQKVCLPEVRTDVDLPMLSSRHRCVSAPLFSASGDESSDKSTEESRWEMDIGRALLLNFISFWRRLKHDRCIHGLFGTSSAVERSELLRCSP 256
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BLAST of mRNA_E-siliculosus-1a_M_contig825.16446.1 vs. uniprot
Match: D7FRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW3_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 6.470e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   13 TKKQEKNSRMRNRWSSVWIKCCQG-KPRACQRVADPSARRNTKSQK 147
            +K +EK SRMR  WSSVW+KCCQG KPRACQRVADPSARRNTKSQK
Sbjct:  115 SKTKEKTSRMR--WSSVWVKCCQGGKPRACQRVADPSARRNTKSQK 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig825.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G941_ECTSI1.290e-8494.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRW3_ECTSI6.470e-1482.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig825contigE-siliculosus-1a_M_contig825:89..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size414
Model size414
Exons1
Ec32 orthologEc-00_011150.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936263.1843774-CDS-E-siliculosus-1a_M_contig825:88..5021622936263.1843774-CDS-E-siliculosus-1a_M_contig825:88..502Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig825 89..502 +
1696250997.8761272-CDS-E-siliculosus-1a_M_contig825:88..5021696250997.8761272-CDS-E-siliculosus-1a_M_contig825:88..502Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig825 89..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig825.16446.1prot_E-siliculosus-1a_M_contig825.16446.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig825 89..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig825.16446.1

>prot_E-siliculosus-1a_M_contig825.16446.1 ID=prot_E-siliculosus-1a_M_contig825.16446.1|Name=mRNA_E-siliculosus-1a_M_contig825.16446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=138bp
SSFFTKKQEKNSRMRNRWSSVWIKCCQGKPRACQRVADPSARRNTKSQKV
CLPEVRTDVELPMLSSRHRCVSAPLFSASGDESSDKSTEESRWEMDIGRA
LLLNFISFLAPIEHDRCIHGLFGTSSAVERSELLRCSP
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mRNA from alignment at E-siliculosus-1a_M_contig825:89..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig825.16446.1 ID=mRNA_E-siliculosus-1a_M_contig825.16446.1|Name=mRNA_E-siliculosus-1a_M_contig825.16446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig825:89..502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCAGCTTTTTCACGAAAAAGCAGGAAAAGAACTCCCGCATGCGAAACAG
ATGGAGCTCCGTATGGATCAAGTGCTGCCAGGGGAAGCCGAGAGCGTGTC
AACGTGTCGCGGATCCGAGCGCTCGCCGCAACACAAAGTCACAGAAGGTT
TGTCTGCCTGAAGTACGAACCGATGTGGAGCTCCCGATGTTGAGCTCTCG
CCACCGTTGTGTCTCGGCTCCTCTTTTTAGCGCGTCGGGTGACGAGTCAT
CTGACAAGTCAACGGAGGAGTCGCGATGGGAAATGGACATTGGGCGCGCT
TTGTTGTTGAACTTCATTTCTTTTTTGGCGCCGATTGAACATGATCGCTG
CATACATGGACTTTTCGGGACATCGTCCGCGGTTGAACGTTCTGAGCTGC
TGCGCTGTAGTCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig825:89..502+

>mRNA_E-siliculosus-1a_M_contig825.16446.1 ID=mRNA_E-siliculosus-1a_M_contig825.16446.1|Name=mRNA_E-siliculosus-1a_M_contig825.16446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=828bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig825:89..502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCAGCTTTTTCACGAAAAAGCAGGAAAAGAACTCCCGCATGCGAAACAG
ATGGAGCTCCGTATGGATCAAGTGCTGCCAGGGGAAGCCGAGAGCGTGTC
AACGTGTCGCGGATCCGAGCGCTCGCCGCAACACAAAGTCACAGAAGGTT
TGTCTGCCTGAAGTACGAACCGATGTGGAGCTCCCGATGTTGAGCTCTCG
CCACCGTTGTGTCTCGGCTCCTCTTTTTAGCGCGTCGGGTGACGAGTCAT
CTGACAAGTCAACGGAGGAGTCGCGATGGGAAATGGACATTGGGCGCGCT
TTGTTGTTGAACTTCATTTCTTTTTTGGCGCCGATTGAACATGATCGCTG
CATACATGGACTTTTCGGGACATCGTCCGCGGTTGAACGTTCTGAGCTGC
TGCGCTGTAGTCCCTCCAGCTTTTTCACGAAAAAGCAGGAAAAGAACTCC
CGCATGCGAAACAGATGGAGCTCCGTATGGATCAAGTGCTGCCAGGGGAA
GCCGAGAGCGTGTCAACGTGTCGCGGATCCGAGCGCTCGCCGCAACACAA
AGTCACAGAAGGTTTGTCTGCCTGAAGTACGAACCGATGTGGAGCTCCCG
ATGTTGAGCTCTCGCCACCGTTGTGTCTCGGCTCCTCTTTTTAGCGCGTC
GGGTGACGAGTCATCTGACAAGTCAACGGAGGAGTCGCGATGGGAAATGG
ACATTGGGCGCGCTTTGTTGTTGAACTTCATTTCTTTTTTGGCGCCGATT
GAACATGATCGCTGCATACATGGACTTTTCGGGACATCGTCCGCGGTTGA
ACGTTCTGAGCTGCTGCGCTGTAGTCCC
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